TCONS_00051477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051477
Unique NameTCONS_00051477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051477 ID=TCONS_00051477|Name=TCONS_00051477|organism=Clytia hemisphaerica|type=transcript|length=555bp
ATAATCACTACCttacctctgatgggactcgaacccacaatccccggctt
aggaggccgatgccttatccattaggctaCAGAGGCGGTGAGGCAGTGCA
AtggtttatttcaaattaataATTTCTTCATCAAAGAATCAATCAAACGA
TATAAGAAATGTATTAATGCCGTAGACCATTAGAATTtatggttctatgg
tgtaatggttagcactccagactctgaatctggcgatccgagttcaagtc
tcggtagAACCTGAACTCTTTAGGTGGAGGATGCACCAGCCTTTTCGATT
CTGTTCTTCTAATCCTGCGGGTTAACCCAGCTGCGACTAGCAGGAGTGGG
GTTTGATGCgagagagaaaagaaaaaatcttcaaaaagttGATTGGCATC
TTTGCTAGTCCATAATGGGAGATCAAGTTGCGATCAAAATCTAGAATTTT
TCAGGAATCTTTTTTTCTCTGCTACACGCGGTTTATTCACTATACGTTTA
TTTTGTGAAGAAGCAACTAAAGACTAGAGGGCAGACCAGTATAAAGAAGA
TAAGT
Run BLAST on NCBI

transcript from alignment at scaffold_201:722787..723341

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051477 ID=TCONS_00051477|Name=TCONS_00051477|organism=Clytia hemisphaerica|type=transcript|length=555bp|location=Sequence derived from alignment at scaffold_201:722787..723341 (Clytia hemisphaerica)
ACTTATCTTCTTTATACTGGTCTGCCCTCTAGTCTTTAGTTGCTTCTTCA
CAAAATAAACGTATAGTGAATAAACCGCGTGTAGCAGAGAAAAAAAGATT
CCTGAAAAATTCTAGATTTTGATCGCAACTTGATCTCCCATTATGGACTA
GCAAAGATGCCAATCaactttttgaagattttttcttttctctctcGCAT
CAAACCCCACTCCTGCTAGTCGCAGCTGGGTTAACCCGCAGGATTAGAAG
AACAGAATCGAAAAGGCTGGTGCATCCTCCACCTAAAGAGTTCAGGTTct
accgagacttgaactcggatcgccagattcagagtctggagtgctaacca
ttacaccatagaaccataAATTCTAATGGTCTACGGCATTAATACATTTC
TTATATCGTTTGATTGATTCTTTGATGAAGAAATtattaatttgaaataa
accaTTGCACTGCCTCACCGCCTCTGtagcctaatggataaggcatcggc
ctcctaagccggggattgtgggttcgagtcccatcagaggtaaGGTAGTG
ATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032631XLOC_032631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051477-exon-scaffold_201-1491911889:722787..723341TCONS_00051477-exon-scaffold_201-1491911889:722787..723341Clytia hemisphaericaexon
TCONS_00051477-exon-scaffold_201-1510915933:722787..723341TCONS_00051477-exon-scaffold_201-1510915933:722787..723341Clytia hemisphaericaexon
TCONS_00051477-exon-scaffold_201-1575043694:722787..723341TCONS_00051477-exon-scaffold_201-1575043694:722787..723341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:722787..723341 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.820295	0.399958	0.116097	0.567916	1.10621	0.109268	0.527309	0.24683	0.259217	0.535138	0.103884	0.887756	0.613746	0.21246	0.989805	1.37463	0.76974	1.26233	1.41699	0.456238	1.09052	1.16055	0.7054	0.748196	0.110089	0	0.421795	0.15005	0.569039	0.463809
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top