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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051475 ID=TCONS_00051475|Name=TCONS_00051475|organism=Clytia hemisphaerica|type=transcript|length=1019bp
CAACAATGGCTGGCTCAAAATGTTCAACGCTATTTAACAAAAGAGATTTC
AATGACTTTTATTTCCCtatatcttgtatattttagtcaTCCGTTTGTAT
TGTTTCTCTGTTGACAGCTCTTCATTTTCAGCCAGTTCACGAAGACTTTC
TAAATGAGCTTCGTACATCTTTCTAAACAGTTCAACAGGACCTGCTAATG
ATTCTTCATAACTACAAAGGAAAGATACATTGCATTCGGTACATTGAAAA
GTCTTGACAGCATCAAACTCTTCattcaaaagaatttctccTCGGTCCAT
TCCCAACTGAATGTCAGAACGTATTTCATCAAAGCGTATTGTCAACCAGT
TTTCACTCAATTTGTTCATCTTATCCTCATCTAATTTTAACGCAGTAATC
TTTTTCCAATCAACAGGATAATCCAAAGATAATCCTTTCATCGTCAGCCA
CTCTGTTTTGTTCATCGGTGTACGATACTCGTCAGGGAGGTTCTGTAAAG
CGTCAAAAGTGTCGATGAGACTTATGAAAGATCTGTAAATGATCCGATTT
TTTGTCTCTTTGAGATCAACCAAGCCAAAACATAGGGTTGCTAATTggta
aattgattttagtaaaccgacattttttttgatttgaagattttcatttt
cattttcgtaTTCGTGGAAAAGTAATGAAAGAACTGACGTTAGATGCCTC
ATAGATTCATTAAGAATTTCAACAGTAAACATCAGCTTTAAGTTGACATT
AGGGGGTATGTTGTCTCGAAAAAATTTATCTCTCATTTGTGTTGCTTTAA
AACTTTGGTGTTCTTGTTCACTTTGAAACCCATGTAACTGCGATTCAAGT
GGATGTATTTCTGATAAATTCATTAGATTATCAGTGATCTTGATCTTCTC
TAAAATTTCTTTGACCTTCTCAATTTTAAAAGGATCCAATTTTTGCGGAT
TGTTCAAGACGTTTTGACTGGGTATGAAATAGTTTGGAAGCTTCATCTCC
GAGAAAGCTCTTAACAAAC Run BLAST on NCBI protein sequence of TCONS_00051475-protein >TCONS_00051475-protein ID=TCONS_00051475-protein|Name=TCONS_00051475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
LLRAFSEMKLPNYFIPSQNVLNNPQKLDPFKIEKVKEILEKIKITDNLMN
LSEIHPLESQLHGFQSEQEHQSFKATQMRDKFFRDNIPPNVNLKLMFTVE
ILNESMRHLTSVLSLLFHEYENENENLQIKKNVGLLKSIYQLATLCFGLV
DLKETKNRIIYRSFISLIDTFDALQNLPDEYRTPMNKTEWLTMKGLSLDY
PVDWKKITALKLDEDKMNKLSENWLTIRFDEIRSDIQLGMDRGEILLNEE
FDAVKTFQCTECNVSFLCSYEESLAGPVELFRKMYEAHLESLRELAENEE
LSTEKQYKRMTKIYKI Run BLAST on NCBI transcript from alignment at scaffold_201:686884..687902 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051475 ID=TCONS_00051475|Name=TCONS_00051475|organism=Clytia hemisphaerica|type=transcript|length=1019bp|location=Sequence derived from alignment at scaffold_201:686884..687902 (Clytia hemisphaerica)
GTTTGTTAAGAGCTTTCTCGGAGATGAAGCTTCCAAACTATTTCATACCC
AGTCAAAACGTCTTGAACAATCCGCAAAAATTGGATCCTTTTAAAATTGA
GAAGGTCAAAGAAATTTTAGAGAAGATCAAGATCACTGATAATCTAATGA
ATTTATCAGAAATACATCCACTTGAATCGCAGTTACATGGGTTTCAAAGT
GAACAAGAACACCAAAGTTTTAAAGCAACACAAATGAGAGATAAATTTTT
TCGAGACAACATACCCCCTAATGTCAACTTAAAGCTGATGTTTACTGTTG
AAATTCTTAATGAATCTATGAGGCATCTAACGTCAGTTCTTTCATTACTT
TTCCACGAAtacgaaaatgaaaatgaaaatcttcaaatcaaaaaaaatgt
cggtttactaaaatcaatttaccAATTAGCAACCCTATGTTTTGGCTTGG
TTGATCTCAAAGAGACAAAAAATCGGATCATTTACAGATCTTTCATAAGT
CTCATCGACACTTTTGACGCTTTACAGAACCTCCCTGACGAGTATCGTAC
ACCGATGAACAAAACAGAGTGGCTGACGATGAAAGGATTATCTTTGGATT
ATCCTGTTGATTGGAAAAAGATTACTGCGTTAAAATTAGATGAGGATAAG
ATGAACAAATTGAGTGAAAACTGGTTGACAATACGCTTTGATGAAATACG
TTCTGACATTCAGTTGGGAATGGACCGAggagaaattcttttgaatGAAG
AGTTTGATGCTGTCAAGACTTTTCAATGTACCGAATGCAATGTATCTTTC
CTTTGTAGTTATGAAGAATCATTAGCAGGTCCTGTTGAACTGTTTAGAAA
GATGTACGAAGCTCATTTAGAAAGTCTTCGTGAACTGGCTGAAAATGAAG
AGCTGTCAACAGAGAAACAATACAAACGGAtgactaaaatatacaagata
taGGGAAATAAAAGTCATTGAAATCTCTTTTGTTAAATAGCGTTGAACAT
TTTGAGCCAGCCATTGTTG Coding sequence (CDS) from alignment at scaffold_201:686884..687902 >TCONS_00051475 ID=TCONS_00051475|Name=TCONS_00051475|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_201:686884..687902 (Clytia hemisphaerica)
TTGTTAAGAGCTTTCTCGGAGATGAAGCTTCCAAACTATTTCATACCCAG
TCAAAACGTCTTGAACAATCCGCAAAAATTGGATCCTTTTAAAATTGAGA
AGGTCAAAGAAATTTTAGAGAAGATCAAGATCACTGATAATCTAATGAAT
TTATCAGAAATACATCCACTTGAATCGCAGTTACATGGGTTTCAAAGTGA
ACAAGAACACCAAAGTTTTAAAGCAACACAAATGAGAGATAAATTTTTTC
GAGACAACATACCCCCTAATGTCAACTTAAAGCTGATGTTTACTGTTGAA
ATTCTTAATGAATCTATGAGGCATCTAACGTCAGTTCTTTCATTACTTTT
CCACGAAtacgaaaatgaaaatgaaaatcttcaaatcaaaaaaaatgtcg
gtttactaaaatcaatttaccAATTAGCAACCCTATGTTTTGGCTTGGTT
GATCTCAAAGAGACAAAAAATCGGATCATTTACAGATCTTTCATAAGTCT
CATCGACACTTTTGACGCTTTACAGAACCTCCCTGACGAGTATCGTACAC
CGATGAACAAAACAGAGTGGCTGACGATGAAAGGATTATCTTTGGATTAT
CCTGTTGATTGGAAAAAGATTACTGCGTTAAAATTAGATGAGGATAAGAT
GAACAAATTGAGTGAAAACTGGTTGACAATACGCTTTGATGAAATACGTT
CTGACATTCAGTTGGGAATGGACCGAggagaaattcttttgaatGAAGAG
TTTGATGCTGTCAAGACTTTTCAATGTACCGAATGCAATGTATCTTTCCT
TTGTAGTTATGAAGAATCATTAGCAGGTCCTGTTGAACTGTTTAGAAAGA
TGTACGAAGCTCATTTAGAAAGTCTTCGTGAACTGGCTGAAAATGAAGAG
CTGTCAACAGAGAAACAATACAAACGGAtgactaaaatatacaagatata
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051475-exon-scaffold_201-1491911889:686884..687902 | TCONS_00051475-exon-scaffold_201-1491911889:686884..687902 | Clytia hemisphaerica | exon |
| TCONS_00051475-exon-scaffold_201-1510915933:686884..687902 | TCONS_00051475-exon-scaffold_201-1510915933:686884..687902 | Clytia hemisphaerica | exon |
| TCONS_00051475-exon-scaffold_201-1575043694:686884..687902 | TCONS_00051475-exon-scaffold_201-1575043694:686884..687902 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:686884..687902 . |
Blast
The following BLAST results are available for this feature:
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