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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051474 ID=TCONS_00051474|Name=TCONS_00051474|organism=Clytia hemisphaerica|type=transcript|length=1968bp
AGCCGCACTTAATTACAATTTGTGAAGTTAAACCAAAACATGGTAAAGTA
TGGACAATGCACGAATACGAAATGAAAGAATATAAAGTCGTTAGCTCCAC
TAATATTGATAACAAAAAAGGTCGAGGAATCGTCATACTGGCACACTCAA
CCATTGACCATCTTGTTGCTGACATCAAGAGTCCAGTTGATTTTGAAGAA
ACTTGTATTATTGAGATTCGTCTggcaaaacaagaaaaacttgTGTTTGC
ATGTATATACTGAAGTCCTACGAAACAAGCCGACTCGGATAACAACAATT
CTATGTTGAATAGTTTGCTGAAGACATTGAGTCAGGACAAGAGGTACTCT
CACAAATGTTTTGTGGGAGATTTCAACCTACCAACGATAAATTGGGAAAG
CTGGACCTCACCCCACATTGAGGAtagtaaagaagaaaaattcctAGATG
CACTACGCAATTCATTTCTTTACCAACATGTAAAAGAATCAACAAGATGT
AGAGGAATGGACGAGCCGTCTCTAGTAGACCTCATCCTAACCAGCGAATA
TAACCAAATCAATAACCTCAAATACCTCAGTCCACTAGGACTGGGTGACC
ACAGTGTGCCCGTCTTCGACTTCAAGTGTCGTGCCGAACAGAAGCCAAGT
TGCCAGAAATATGCCTACAGTTCAGCTGATTTCCAGGAGATGCGATACTT
TCTTGAGGCCGAAAAATGGACTCAAAATTTCATCGCAAAATCGAACGATA
AGACCGTATGTGAGCTCTGGGAACATTTCAAAGGGGATCTTACCGATTTG
AGAAACAGATTCGTGCCTTTAAAAGAAGTTGGAAATTCCTATTGGAAGTG
TAAAGGAATTGTTCCGTTGGGAGAAGAAATCCGTAATGAAATCAGAACTA
AGAAGCGACTGCATAGGAAGTGGGTCAATTCTTCAGACGCGGAAAAAGTC
TTCAATAGAACACAATATGTTTCATCACGTAACCGAGTCAACAGCATGAT
CAGGCAAGTGCGTAGAAGTTATGAACCCAACATCAGTAGATCAGCAAAGA
ATAACCCAAAGCGTTTCTGGTCACACGTTAGAAATCAACTGAAATCAACT
AGCCGCGTGACATCTCTACTGGAGTCCGAAGATGACAAGAAATCGATAAA
GCATGAAGATGTGGAGAAAGCCAATATTCTGCAGAAGCAATTTTGCAGTG
TATTTACACATGAACCTGAAGGAGAACTACCTCCATTTGAGAAGAAAACA
GAATCGATGATTAATATTCTTGAAGTTTCCCAAGAAACAGTAATAAAACA
GATCAAACAGCTAGATGCAAATAAATCGTTCGGACCTGATGAGCTACATC
CGTCAATGCTGAAAGAACTGATTGACTTTGTAGCAGAACCATTGAAGATC
ATTATGAACAAGACATTAGAAGAGAGCGTTCTGCCTGAAGACTGGAAGAT
GGCACATGTCACACCaatatacaaaaacaagggTGCACACAATCTGGTAA
TAAACTACAGACCTGTCAGCCTGACATCGATAATATGcaaaatgatggaa
tcagtaTTACGTAAAGTAATGATTGATCACCTTGTTCGAGAGAATCTTCT
CTCAGACAAGTAATATGGCTTCATTGGCAAAAGATCAACAGTTACGCAAC
TACTATATTATATCGACCTTTGCTGCGAATCAATGTCAGAAGGAAAAGTA
GTTGACTGTGTCTACTTTGATTTTGCAAAAGATACAGTTCCTCACAGGAG
GTTGATAAAGAAACTAGAATGTTACGGGATCAGCGGAAACCTGTTAAAAT
GGATTATAGCGCCGCAAGCAACTAGTCAAGGTTAACTCAGCTAAATCAAC
TACTGACCATGTGATAAGTGGAATTCCTCAAGGAAGCGTACTTGGGCCTC
TGCTCTTTGTTATCTACATAAACGATTTGCCAGAAAAGGTAGTCTCCGAT
GCATTTCTCTTTGCCGAC Run BLAST on NCBI protein sequence of TCONS_00051474-protein >TCONS_00051474-protein ID=TCONS_00051474-protein|Name=TCONS_00051474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
MLNSLLKTLSQDKRYSHKCFVGDFNLPTINWESWTSPHIEDSKEEKFLDA
LRNSFLYQHVKESTRCRGMDEPSLVDLILTSEYNQINNLKYLSPLGLGDH
SVPVFDFKCRAEQKPSCQKYAYSSADFQEMRYFLEAEKWTQNFIAKSNDK
TVCELWEHFKGDLTDLRNRFVPLKEVGNSYWKCKGIVPLGEEIRNEIRTK
KRLHRKWVNSSDAEKVFNRTQYVSSRNRVNSMIRQVRRSYEPNISRSAKN
NPKRFWSHVRNQLKSTSRVTSLLESEDDKKSIKHEDVEKANILQKQFCSV
FTHEPEGELPPFEKKTESMINILEVSQETVIKQIKQLDANKSFGPDELHP
SMLKELIDFVAEPLKIIMNKTLEESVLPEDWKMAHVTPIYKNKGAHNLVI
NYRPVSLTSIICKMMESVLRKVMIDHLVRENLLSDK Run BLAST on NCBI transcript from alignment at scaffold_201:659153..661120 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051474 ID=TCONS_00051474|Name=TCONS_00051474|organism=Clytia hemisphaerica|type=transcript|length=1968bp|location=Sequence derived from alignment at scaffold_201:659153..661120 (Clytia hemisphaerica)
GTCGGCAAAGAGAAATGCATCGGAGACTACCTTTTCTGGCAAATCGTTTA
TGTAGATAACAAAGAGCAGAGGCCCAAGTACGCTTCCTTGAGGAATTCCA
CTTATCACATGGTCAGTAGTTGATTTAGCTGAGTTAACCTTGACTAGTTG
CTTGCGGCGCTATAATCCATTTTAACAGGTTTCCGCTGATCCCGTAACAT
TCTAGTTTCTTTATCAACCTCCTGTGAGGAACTGTATCTTTTGCAAAATC
AAAGTAGACACAGTCAACTACTTTTCCTTCTGACATTGATTCGCAGCAAA
GGTCGATATAATATAGTAGTTGCGTAACTGTTGATCTTTTGCCAATGAAG
CCATATTACTTGTCTGAGAGAAGATTCTCTCGAACAAGGTGATCAATCAT
TACTTTACGTAAtactgattccatcattttgCATATTATCGATGTCAGGC
TGACAGGTCTGTAGTTTATTACCAGATTGTGTGCAcccttgtttttgtat
attGGTGTGACATGTGCCATCTTCCAGTCTTCAGGCAGAACGCTCTCTTC
TAATGTCTTGTTCATAATGATCTTCAATGGTTCTGCTACAAAGTCAATCA
GTTCTTTCAGCATTGACGGATGTAGCTCATCAGGTCCGAACGATTTATTT
GCATCTAGCTGTTTGATCTGTTTTATTACTGTTTCTTGGGAAACTTCAAG
AATATTAATCATCGATTCTGTTTTCTTCTCAAATGGAGGTAGTTCTCCTT
CAGGTTCATGTGTAAATACACTGCAAAATTGCTTCTGCAGAATATTGGCT
TTCTCCACATCTTCATGCTTTATCGATTTCTTGTCATCTTCGGACTCCAG
TAGAGATGTCACGCGGCTAGTTGATTTCAGTTGATTTCTAACGTGTGACC
AGAAACGCTTTGGGTTATTCTTTGCTGATCTACTGATGTTGGGTTCATAA
CTTCTACGCACTTGCCTGATCATGCTGTTGACTCGGTTACGTGATGAAAC
ATATTGTGTTCTATTGAAGACTTTTTCCGCGTCTGAAGAATTGACCCACT
TCCTATGCAGTCGCTTCTTAGTTCTGATTTCATTACGGATTTCTTCTCCC
AACGGAACAATTCCTTTACACTTCCAATAGGAATTTCCAACTTCTTTTAA
AGGCACGAATCTGTTTCTCAAATCGGTAAGATCCCCTTTGAAATGTTCCC
AGAGCTCACATACGGTCTTATCGTTCGATTTTGCGATGAAATTTTGAGTC
CATTTTTCGGCCTCAAGAAAGTATCGCATCTCCTGGAAATCAGCTGAACT
GTAGGCATATTTCTGGCAACTTGGCTTCTGTTCGGCACGACACTTGAAGT
CGAAGACGGGCACACTGTGGTCACCCAGTCCTAGTGGACTGAGGTATTTG
AGGTTATTGATTTGGTTATATTCGCTGGTTAGGATGAGGTCTACTAGAGA
CGGCTCGTCCATTCCTCTACATCTTGTTGATTCTTTTACATGTTGGTAAA
GAAATGAATTGCGTAGTGCATCTaggaatttttcttctttactaTCCTCA
ATGTGGGGTGAGGTCCAGCTTTCCCAATTTATCGTTGGTAGGTTGAAATC
TCCCACAAAACATTTGTGAGAGTACCTCTTGTCCTGACTCAATGTCTTCA
GCAAACTATTCAACATAGAATTGTTGTTATCCGAGTCGGCTTGTTTCGTA
GGACTTCAGTATATACATGCAAACAcaagtttttcttgttttgccAGACG
AATCTCAATAATACAAGTTTCTTCAAAATCAACTGGACTCTTGATGTCAG
CAACAAGATGGTCAATGGTTGAGTGTGCCAGTATGACGATTCCTCGACCT
TTTTTGTTATCAATATTAGTGGAGCTAACGACTTTATATTCTTTCATTTC
GTATTCGTGCATTGTCCATACTTTACCATGTTTTGGTTTAACTTCACAAA
TTGTAATTAAGTGCGGCT Coding sequence (CDS) from alignment at scaffold_201:659153..661120 >TCONS_00051474 ID=TCONS_00051474|Name=TCONS_00051474|organism=Clytia hemisphaerica|type=CDS|length=1311bp|location=Sequence derived from alignment at scaffold_201:659153..661120 (Clytia hemisphaerica)
TTACTTGTCTGAGAGAAGATTCTCTCGAACAAGGTGATCAATCATTACTT
TACGTAAtactgattccatcattttgCATATTATCGATGTCAGGCTGACA
GGTCTGTAGTTTATTACCAGATTGTGTGCAcccttgtttttgtatattGG
TGTGACATGTGCCATCTTCCAGTCTTCAGGCAGAACGCTCTCTTCTAATG
TCTTGTTCATAATGATCTTCAATGGTTCTGCTACAAAGTCAATCAGTTCT
TTCAGCATTGACGGATGTAGCTCATCAGGTCCGAACGATTTATTTGCATC
TAGCTGTTTGATCTGTTTTATTACTGTTTCTTGGGAAACTTCAAGAATAT
TAATCATCGATTCTGTTTTCTTCTCAAATGGAGGTAGTTCTCCTTCAGGT
TCATGTGTAAATACACTGCAAAATTGCTTCTGCAGAATATTGGCTTTCTC
CACATCTTCATGCTTTATCGATTTCTTGTCATCTTCGGACTCCAGTAGAG
ATGTCACGCGGCTAGTTGATTTCAGTTGATTTCTAACGTGTGACCAGAAA
CGCTTTGGGTTATTCTTTGCTGATCTACTGATGTTGGGTTCATAACTTCT
ACGCACTTGCCTGATCATGCTGTTGACTCGGTTACGTGATGAAACATATT
GTGTTCTATTGAAGACTTTTTCCGCGTCTGAAGAATTGACCCACTTCCTA
TGCAGTCGCTTCTTAGTTCTGATTTCATTACGGATTTCTTCTCCCAACGG
AACAATTCCTTTACACTTCCAATAGGAATTTCCAACTTCTTTTAAAGGCA
CGAATCTGTTTCTCAAATCGGTAAGATCCCCTTTGAAATGTTCCCAGAGC
TCACATACGGTCTTATCGTTCGATTTTGCGATGAAATTTTGAGTCCATTT
TTCGGCCTCAAGAAAGTATCGCATCTCCTGGAAATCAGCTGAACTGTAGG
CATATTTCTGGCAACTTGGCTTCTGTTCGGCACGACACTTGAAGTCGAAG
ACGGGCACACTGTGGTCACCCAGTCCTAGTGGACTGAGGTATTTGAGGTT
ATTGATTTGGTTATATTCGCTGGTTAGGATGAGGTCTACTAGAGACGGCT
CGTCCATTCCTCTACATCTTGTTGATTCTTTTACATGTTGGTAAAGAAAT
GAATTGCGTAGTGCATCTaggaatttttcttctttactaTCCTCAATGTG
GGGTGAGGTCCAGCTTTCCCAATTTATCGTTGGTAGGTTGAAATCTCCCA
CAAAACATTTGTGAGAGTACCTCTTGTCCTGACTCAATGTCTTCAGCAAA
CTATTCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051474-exon-scaffold_201-1491911889:659153..661120 | TCONS_00051474-exon-scaffold_201-1491911889:659153..661120 | Clytia hemisphaerica | exon |
| TCONS_00051474-exon-scaffold_201-1510915933:659153..661120 | TCONS_00051474-exon-scaffold_201-1510915933:659153..661120 | Clytia hemisphaerica | exon |
| TCONS_00051474-exon-scaffold_201-1575043694:659153..661120 | TCONS_00051474-exon-scaffold_201-1575043694:659153..661120 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:659153..661120 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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