TCONS_00051451 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051451
Unique NameTCONS_00051451
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051451 ID=TCONS_00051451|Name=TCONS_00051451|organism=Clytia hemisphaerica|type=transcript|length=355bp
tgagctTGATAGATATCAATACAGCAAAGCCAATTACCAGTTTATGAGAT
CTCATCTAAGCCATATCAATTGGTCTATCGAATTCATCCAAAATTCGATT
GAATTAGATGTGAATGAGAGTTGGGACCTATTCCTAAAACAAATGATCGA
GCTCCGAAACCTCTATGTGCCACTTACCCACAATAAGAACGACCTGTCAA
ATCAAAGAAGGAAAGGGAAGCATCCCTTAGAtccaaaaatttgtcagatA
ATCAAAGAGAAACGTAAGGCGCATAGAAAATGGATCATCTCACTTCAAAA
TGACGACACTGAGAGACGTAGAAGGGAGTACGTAAGATGGCGCAACGCCG
CTAAT
Run BLAST on NCBI

protein sequence of TCONS_00051451-protein

>TCONS_00051451-protein ID=TCONS_00051451-protein|Name=TCONS_00051451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
ELDRYQYSKANYQFMRSHLSHINWSIEFIQNSIELDVNESWDLFLKQMIE
LRNLYVPLTHNKNDLSNQRRKGKHPLDPKICQIIKEKRKAHRKWIISLQN
DDTERRRREYVRWRNAAN
Run BLAST on NCBI

transcript from alignment at scaffold_201:298166..298520

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051451 ID=TCONS_00051451|Name=TCONS_00051451|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at scaffold_201:298166..298520 (Clytia hemisphaerica)
ATTAGCGGCGTTGCGCCATCTTACGTACTCCCTTCTACGTCTCTCAGTGT
CGTCATTTTGAAGTGAGATGATCCATTTTCTATGCGCCTTACGTTTCTCT
TTGATTatctgacaaatttttggaTCTAAGGGATGCTTCCCTTTCCTTCT
TTGATTTGACAGGTCGTTCTTATTGTGGGTAAGTGGCACATAGAGGTTTC
GGAGCTCGATCATTTGTTTTAGGAATAGGTCCCAACTCTCATTCACATCT
AATTCAATCGAATTTTGGATGAATTCGATAGACCAATTGATATGGCTTAG
ATGAGATCTCATAAACTGGTAATTGGCTTTGCTGTATTGATATCTATCAa
gctca

Coding sequence (CDS) from alignment at scaffold_201:298166..298520

>TCONS_00051451 ID=TCONS_00051451|Name=TCONS_00051451|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_201:298166..298520 (Clytia hemisphaerica)
ATTAGCGGCGTTGCGCCATCTTACGTACTCCCTTCTACGTCTCTCAGTGT
CGTCATTTTGAAGTGAGATGATCCATTTTCTATGCGCCTTACGTTTCTCT
TTGATTatctgacaaatttttggaTCTAAGGGATGCTTCCCTTTCCTTCT
TTGATTTGACAGGTCGTTCTTATTGTGGGTAAGTGGCACATAGAGGTTTC
GGAGCTCGATCATTTGTTTTAGGAATAGGTCCCAACTCTCATTCACATCT
AATTCAATCGAATTTTGGATGAATTCGATAGACCAATTGATATGGCTTAG
ATGAGATCTCATAAACTGGTAATTGGCTTTGCTGTATTGATATCTATCAa
gctc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032605XLOC_032605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051451-exon-scaffold_201-1491911889:298166..298520TCONS_00051451-exon-scaffold_201-1491911889:298166..298520Clytia hemisphaericaexon
TCONS_00051451-exon-scaffold_201-1510915933:298166..298520TCONS_00051451-exon-scaffold_201-1510915933:298166..298520Clytia hemisphaericaexon
TCONS_00051451-exon-scaffold_201-1575043694:298166..298520TCONS_00051451-exon-scaffold_201-1575043694:298166..298520Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051451-proteinTCONS_00051451-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:298166..298520 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0683608	0	0	0.44024	0	0	0.614943	0.771418	0.309104	0	1.49713	1.18237	0.385866	0.929079	0.0258672	0	0	0	0.52703	0	0.0703449	0.602673	1.16422	12.9087	15.4469	5.22129	2.4723
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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