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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051417 ID=TCONS_00051417|Name=TCONS_00051417|organism=Clytia hemisphaerica|type=transcript|length=2957bp CAACAGTTTCTCTATCTTATTTGCACGTCATGAACATTTCCAACACGAGC AAACTCAATGCAGACCCAAGTTCTTTGAGAAACTAGTCGAGCAATGGTGA TCTAATTTTTCAAAAGATTTCTCACATAGCACACACATAACATCAAAACC TCTCTTGGAAATTTCCAAAAATATTATTCCACAATGGAAATAGCTTGTTT TATTCCGTAACAAGTTTTGATGAACACAGTTGCATTTTTTGGTATTTTTT GTGTCCAGAGAAAAGTTTGCTCGCTGTTTGTGATGATTTTTTGAAATTTC GACATTAAAAAAATCAGTTTTTTTTAAATAATTATCGAATTACCTTTTCA AACCTAATGTATGATAGCTCAAAATTCAAGTTAGAGCATCCTATatacga ttaaaaaagaatgaacaaaaaatttgaatcctgaagctcacaatatctca acAAACCTGTAatctttttttggtgcacctggtatgtgttaaatgcataa ccaggtaggtccataaaagtatcacttgtttatttatttttcaaaagtct ttttcaatagtgttaatagtttctcccaatagatatgctttcattatatt tttttgtattttgtcccgttatgtcttatgtgtttcattgtttcagattg tttcaatgttcattgattagttttgataaccatgtaggtccataaaagta ccACTTGTTGCatgttctttttgaaaaatgtaaatttcaAGAAATGTATC TTGATCAACCACTGATTAGAGTAGATTTTACATATCTGCAGAGGAGATCA ATAACATATCTGTGCAAAATAATTAGAGTAAAATGAATTTGCTATTACAT TGCTGTGCTCAATACACAACATTGGCTATTCATTTAGAGAGTGGTCAAAG CATGGAATCAAACAACAAATTGGGTTATCTActaaattttaagatatttg tgCAATACTATACTACAACCATACAATTTATCATAATCATTCTAATCATA ATGTCATGCAAAGCAAGCTAATTCCTATATGTAATTATGATAATTATGAC ATAATACaattaacataaaaataaatgaagttttttgaatttctaaattt ttagtttacAAACcagaatatttttcttttcattttttcaaaattgtttg tgcaaatCTCAGtgctttttcatttgtttttatttatttatgtttATCAT TTCCTTAAATACGAGTTTGTTCCCAATCTAATCAAATGTTTCTGTTCCAG TATGTTTTATTGCCCAAAGCATTCTATAAAGGGTTCAGTCAAAGCTGATT CTTATTGCATTTTTTCCTGCATCATTGTATGGAATGGTGATGGTCACCAT TCGACTTTCATCTCCTTCACTTGACGGACTCCATTTGGTATCTGTTTTCA AAATCTCTTCATCGATTGaactttcaactttttctttgacaactttttta TTTAGGCTTGTACTTGTGCTGGAAACGGTAGAGTTAAtcttttccttttc tttgtGTACGCTCTCAATCACCGCTCGCTTCACAAGAGggatcaaatatt tttcaagccACTTTACACGACCATTATGTTGGTTGTTGTTAACCATTCCT TTGTTGTATTTCAAATCCACAAATGCACTGTTTGTTGTTACTGTCCCTAC CAGCCAATTTTTTGGTTCCCATCGAGCAAATTTGTTTCCATGCCATGATG GATACATTTCAAAAATGTCATTGATCCCTCCCATTTCATACAATCCCAAA CGCTCTAGTGTTGTGCTTGCACATTGAgagaaaattgttcttatttcagG CTTAATTGTCTCCAGCAAATCATTTTCTGGGTCAGATGGGTCAATAAGAT AGGGGGCCATATGGTTACAAACATTAGGAATTCCGTTGCTACTCCAGAAA TTTCTGTGTGATATCTTGAGCTCCTCAATATCTCTCAACATTACAAGGAA TTTTCTGAAGGCATTCAGATGGGACAACCTATGTCTTGcatgtttttctt cttcagccGCTTCAGCTGCTGCTGCAAAAGCAATCAACTCCATGATTGTG GATCTTCCAGAAACATAGGAATTAGGTGTCAGCAACTCTAAGACAATTGT CTTGTTCCAAAATTTTGCCAAGCGAGCAACTTCATGGGCAAATGCACTCT TTTGTTTGGTAAACTCAATACTTCTTTCAACAAATGCAACGCTCTGCCCT TTTTTATCTCTATGGTTACTGTGGTATGTTTGGTTCAAACCAACGCAGAT ATCAAAACCAATATCATCAATTGTGACCTGTAATGTGCTTGGATTCCGTC TTGGTGttttcctgaaatctttttcttccagatcaaatttttcattagAT ATCAGAATCTCTTCAAAATTATCCAGAACTTCAGGAATTTTAACATTGAA GCCTTGTTTGTCTTGAGGATTCACAAACACAACACAATCAAAATCTATGT GACCAGAAATGGCTGTCTTTTTAGCTGTACTCCCTGCCAATCTTTCTCGG TCAATGGAATATTTTCTTGAAGCTTGAAGAAGTCTGAAAATATTGTTCAT CACTTTTTTGCCTTGACTGATCTCATTTTGCGAAGGTTTGCATTCGTCAA CATAGGATTGAATGTATCTCTTAAGTTTTTCTTCCATTGCAATCCTGAAA AAAAGAATAGAACTTTTTACCTAACTCACAAAGTCTAGAGCAAtgcaaga aattcatcattttaATAAGATCattcaagttttcaaaatttcatttcttt ttatattattCTGGTGACATCAGGGCACCTTTATATCAGTAAAAAAATGT TGTGACTATAGTGGCCATTTTTATCTGATGTATTTTGGGGAGTCCCAAGG AATCATTATGTAGCGTAACCTTTATTTTGAGCACACCTTTTGCTCAGGTT TTTTGAAATAGCACACTGCTTCACTTTTGTTGTCACagcattttttggac ctaccca Run BLAST on NCBI transcript from alignment at scaffold_201:457978..460987- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051417 ID=TCONS_00051417|Name=TCONS_00051417|organism=Clytia hemisphaerica|type=transcript|length=3010bp|location=Sequence derived from alignment at scaffold_201:457978..460987- (Clytia hemisphaerica) CAACAGTTTCTCTATCTTATTTGCACGTCATGAACATTTCCAACACGAGC
AAACTCAATGCAGACCCAAGTTCTTTGAGAAACTAGTCGAGCAATGGTGA
TCTAATTTTTCAAAAGATTTCTCACATAGCACACACATAACATCAAAACC
TCTCTTGGAAATTTCCAAAAATATTATTCCACAATGGAAATAGCTTGTTT
TATTCCGTAACAAGTTTTGATGAACACAGTTGCATTTTTTGGTATTTTTT
GTGTCCAGAGAAAAGTTTGCTCGCTGTTTGTGATGATTTTTTGAAATTTC
GACATTAAAAAAATCAGTTTTTTTTAAATAATTATCGAATTACCTTTTCA
AACCTAATGTATGATAGCTCAAAATTCAAGTTAGAGCATCCTATATACGA
TTAAAAAAGAATGAACAAAAAATTTGAATCCTGAAGCTCACAATATCTCA
ACAAACCTGTAATCTTTTTTTGGTGCACCTGGTATGTGTTAAATGCATAA
CCAGGTAGGTCCATAAAAGTATCACTTGTTTATTTATTTTTCAAAAGTCT
TTTTCAATAGTGTTAATAGTTTCTCCCAATAGATATGCTTTCATTATATT
TTTTTGTATTTTGTCCCGTTATGTCTTATGTGTTTCATTGTTTCAGATTG
TTTCAATGTTCATTGATTAGTTTTGATAACCATGTAGGTCCATAAAAGTA
CCACTTGTTGCATGTTCTTTTTGAAAAATGTAAATTTCAAGAAATGTATC
TTGATCAACCACTGATTAGAGTAGATTTTACATATCTGCAGAGGAGATCA
ATAACATATCTGTGCAAAATAATTAGAGTAAAATGAATTTGCTATTACAT
TGCTGTGCTCAATACACAACATTGGCTATTCATTTAGAGAGTGGTCAAAG
CATGGAATCAAACAACAAATTGGGTTATCTACTAAATTTTAAGATATTTG
TGCAATACTATACTACAACCATACAATTTATCATAATCATTCTAATCATA
ATGTCATGCAAAGCAAGCTAATTCCTATATGTAATTATGATAATTATGAC
ATAATACAATTAACATAAAAATAAATGAAGTTTTTTGAATTTCTAAATTT
TTAGTTTACAAACCAGAATATTTTTCTTTTCATTTTTTCAAAATTGTTTG
TGCAAATCTCAGTGCTTTTTCATTTGTTTTTATTTATTTATGTTTATCAT
TTCCTTAAATACGAGTTTGTTCCCAATCTAATCAAATGTTTCTGTTCCAG
TATGTTTTATTGCCCAAAGCATTCTATAAAGGGTTCAGTCAAAGCTGATT
CTTATTGCATTTTTTCCTGCATCATTGTATGGAATGGTGATGGTCACCAT
TCGACTTTCATCTCCTTCACTTGACGGACTCCATTTGGTATCTGTTTTCA
AAATCTCTTCATCGATTGAACTTTCAACTTTTTCTTTGACAACTTTTTTA
TTTAGGCTTGTACTTGTGCTGGAAACGGTAGAGTTAATCTTTTCCTTTTC
TTTGTGTACGCTCTCAATCACCGCTCGCTTCACAAGAGGGATCAAATATT
TTTCAAGCCACTTTACACGACCATTATGTTGGTTGTTGTTAACCATTCCT
TTGTTGTATTTCAAATCCACAAATGCACTGTTTGTTGTTACTGTCCCTAC
CAGCCAATTTTTTGGTTCCCATCGAGCAAATTTGTTTCCATGCCATGATG
GATACATTTCAAAAATGTCATTGATCCCTCCCATTTCATACAATCCCAAA
CGCTCTAGTGTTGTGCTTGCACATTGAGAGAAAATTGTTCTTATTTCAGG
CTTAATTGTCTCCAGCAAATCATTTTCTGGGTCAGATGGGTCAATAAGAT
AGGGGGCCATATGGTTACAAACATTAGGAATTCCGTTGCTACTCCAGAAA
TTTCTGTGTGATATCTNTTACAAACATTAGGAATTCCGTTGCTACTCCAG
AAATTTCTGTGTGATATCTTGAGCTCCTCAATATCTCTCAACATTACAAG
GAATTTTCTGAAGGCATTCAGATGGGACAACCTATGTCTTGCATGTTTTT
CTTCTTCAGCCGCTTCAGCTGCTGCTGCAAAAGCAATCAACTCCATGATT
GTGGATCTTCCAGAAACATAGGAATTAGGTGTCAGCAACTCTAAGACAAT
TGTCTTGTTCCAAAATTTTGCCAAGCGAGCAACTTCATGGGCAAATGCAC
TCTTTTGTTTGGTAAACTCAATACTTCTTTCAACAAATGCAACGCTCTGC
CCTTTTTTATCTCTATGGTTACTGTGGTATGTTTGGTTCAAACCAACGCA
GATATCAAAACCAATATCATCAATTGTGACCTGTAATGTGCTTGGATTCC
GTCTTGGTGTTTTCCTGAAATCTTTTTCTTCCAGATCAAATTTTTCATTA
GATATCAGAATCTCTTCAAAATTATCCAGAACTTCAGGAATTTTAACATT
GAAGCCTTGTTTGTCTTGAGGATTCACAAACACAACACAATCAAAATCTA
TGTGACCAGAAATGGCTGTCTTTTTAGCTGTACTCCCTGCCAATCTTTCT
CGGTCAATGGAATATTTTCTTGAAGCTTGAAGAAGTCTGAAAATATTGTT
CATCACTTTTTTGCCTTGACTGATCTCATTTTGCGAAGGTTTGCATTCGT
CAACATAGGATTGAATGTATCTCTTAAGTTTTTCTTCCATTGCAATCCTG
AAAAAAAGAATAGAACTTTTTACCTAACTCACAAAGTCTAGAGCAATGCA
AGAAATTCATCATTTTAATAAGATCATTCAAGTTTTCAAAATTTCATTTC
TTTTTATATTATTCTGGTGACATCAGGGCACCTTTATATCAGTAAAAAAA
TGTTGTGACTATAGTGGCCATTTTTATCTGATGTATTTTGGGGAGTCCCA
AGGAATCATTATGTAGCGTAACCTTTATTTTGAGCACACCTTTTGCTCAG
GTTTTTTGAAATAGCACACTGCTTCACTTTTGTTGTCACAGCATTTTTTG
GACCTACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00051417-exon-scaffold_201-1575043694:459116..460987 | TCONS_00051417-exon-scaffold_201-1575043694:459116..460987 | Clytia hemisphaerica | exon |
TCONS_00051417-exon-scaffold_201-1575043694:457978..459062 | TCONS_00051417-exon-scaffold_201-1575043694:457978..459062 | Clytia hemisphaerica | exon |
TCONS_00051417-exon-scaffold_201-1510915933:459116..460987 | TCONS_00051417-exon-scaffold_201-1510915933:459116..460987 | Clytia hemisphaerica | exon |
TCONS_00051417-exon-scaffold_201-1510915933:457978..459062 | TCONS_00051417-exon-scaffold_201-1510915933:457978..459062 | Clytia hemisphaerica | exon |
TCONS_00051417-exon-scaffold_201-1491911889:459116..460987 | TCONS_00051417-exon-scaffold_201-1491911889:459116..460987 | Clytia hemisphaerica | exon |
TCONS_00051417-exon-scaffold_201-1491911889:457978..459062 | TCONS_00051417-exon-scaffold_201-1491911889:457978..459062 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_201 | supercontig | scaffold_201:457978..460987 - |
Blast
The following BLAST results are available for this feature:
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