TCONS_00051417 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051417
Unique Name	TCONS_00051417
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2957

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_201:457978..460987-

transcript sequence

>TCONS_00051417 ID=TCONS_00051417|Name=TCONS_00051417|organism=Clytia hemisphaerica|type=transcript|length=2957bp
CAACAGTTTCTCTATCTTATTTGCACGTCATGAACATTTCCAACACGAGC
AAACTCAATGCAGACCCAAGTTCTTTGAGAAACTAGTCGAGCAATGGTGA
TCTAATTTTTCAAAAGATTTCTCACATAGCACACACATAACATCAAAACC
TCTCTTGGAAATTTCCAAAAATATTATTCCACAATGGAAATAGCTTGTTT
TATTCCGTAACAAGTTTTGATGAACACAGTTGCATTTTTTGGTATTTTTT
GTGTCCAGAGAAAAGTTTGCTCGCTGTTTGTGATGATTTTTTGAAATTTC
GACATTAAAAAAATCAGTTTTTTTTAAATAATTATCGAATTACCTTTTCA
AACCTAATGTATGATAGCTCAAAATTCAAGTTAGAGCATCCTATatacga
ttaaaaaagaatgaacaaaaaatttgaatcctgaagctcacaatatctca
acAAACCTGTAatctttttttggtgcacctggtatgtgttaaatgcataa
ccaggtaggtccataaaagtatcacttgtttatttatttttcaaaagtct
ttttcaatagtgttaatagtttctcccaatagatatgctttcattatatt
tttttgtattttgtcccgttatgtcttatgtgtttcattgtttcagattg
tttcaatgttcattgattagttttgataaccatgtaggtccataaaagta
ccACTTGTTGCatgttctttttgaaaaatgtaaatttcaAGAAATGTATC
TTGATCAACCACTGATTAGAGTAGATTTTACATATCTGCAGAGGAGATCA
ATAACATATCTGTGCAAAATAATTAGAGTAAAATGAATTTGCTATTACAT
TGCTGTGCTCAATACACAACATTGGCTATTCATTTAGAGAGTGGTCAAAG
CATGGAATCAAACAACAAATTGGGTTATCTActaaattttaagatatttg
tgCAATACTATACTACAACCATACAATTTATCATAATCATTCTAATCATA
ATGTCATGCAAAGCAAGCTAATTCCTATATGTAATTATGATAATTATGAC
ATAATACaattaacataaaaataaatgaagttttttgaatttctaaattt
ttagtttacAAACcagaatatttttcttttcattttttcaaaattgtttg
tgcaaatCTCAGtgctttttcatttgtttttatttatttatgtttATCAT
TTCCTTAAATACGAGTTTGTTCCCAATCTAATCAAATGTTTCTGTTCCAG
TATGTTTTATTGCCCAAAGCATTCTATAAAGGGTTCAGTCAAAGCTGATT
CTTATTGCATTTTTTCCTGCATCATTGTATGGAATGGTGATGGTCACCAT
TCGACTTTCATCTCCTTCACTTGACGGACTCCATTTGGTATCTGTTTTCA
AAATCTCTTCATCGATTGaactttcaactttttctttgacaactttttta
TTTAGGCTTGTACTTGTGCTGGAAACGGTAGAGTTAAtcttttccttttc
tttgtGTACGCTCTCAATCACCGCTCGCTTCACAAGAGggatcaaatatt
tttcaagccACTTTACACGACCATTATGTTGGTTGTTGTTAACCATTCCT
TTGTTGTATTTCAAATCCACAAATGCACTGTTTGTTGTTACTGTCCCTAC
CAGCCAATTTTTTGGTTCCCATCGAGCAAATTTGTTTCCATGCCATGATG
GATACATTTCAAAAATGTCATTGATCCCTCCCATTTCATACAATCCCAAA
CGCTCTAGTGTTGTGCTTGCACATTGAgagaaaattgttcttatttcagG
CTTAATTGTCTCCAGCAAATCATTTTCTGGGTCAGATGGGTCAATAAGAT
AGGGGGCCATATGGTTACAAACATTAGGAATTCCGTTGCTACTCCAGAAA
TTTCTGTGTGATATCTTGAGCTCCTCAATATCTCTCAACATTACAAGGAA
TTTTCTGAAGGCATTCAGATGGGACAACCTATGTCTTGcatgtttttctt
cttcagccGCTTCAGCTGCTGCTGCAAAAGCAATCAACTCCATGATTGTG
GATCTTCCAGAAACATAGGAATTAGGTGTCAGCAACTCTAAGACAATTGT
CTTGTTCCAAAATTTTGCCAAGCGAGCAACTTCATGGGCAAATGCACTCT
TTTGTTTGGTAAACTCAATACTTCTTTCAACAAATGCAACGCTCTGCCCT
TTTTTATCTCTATGGTTACTGTGGTATGTTTGGTTCAAACCAACGCAGAT
ATCAAAACCAATATCATCAATTGTGACCTGTAATGTGCTTGGATTCCGTC
TTGGTGttttcctgaaatctttttcttccagatcaaatttttcattagAT
ATCAGAATCTCTTCAAAATTATCCAGAACTTCAGGAATTTTAACATTGAA
GCCTTGTTTGTCTTGAGGATTCACAAACACAACACAATCAAAATCTATGT
GACCAGAAATGGCTGTCTTTTTAGCTGTACTCCCTGCCAATCTTTCTCGG
TCAATGGAATATTTTCTTGAAGCTTGAAGAAGTCTGAAAATATTGTTCAT
CACTTTTTTGCCTTGACTGATCTCATTTTGCGAAGGTTTGCATTCGTCAA
CATAGGATTGAATGTATCTCTTAAGTTTTTCTTCCATTGCAATCCTGAAA
AAAAGAATAGAACTTTTTACCTAACTCACAAAGTCTAGAGCAAtgcaaga
aattcatcattttaATAAGATCattcaagttttcaaaatttcatttcttt
ttatattattCTGGTGACATCAGGGCACCTTTATATCAGTAAAAAAATGT
TGTGACTATAGTGGCCATTTTTATCTGATGTATTTTGGGGAGTCCCAAGG
AATCATTATGTAGCGTAACCTTTATTTTGAGCACACCTTTTGCTCAGGTT
TTTTGAAATAGCACACTGCTTCACTTTTGTTGTCACagcattttttggac
ctaccca

Run BLAST on NCBI

transcript from alignment at scaffold_201:457978..460987-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051417 ID=TCONS_00051417|Name=TCONS_00051417|organism=Clytia hemisphaerica|type=transcript|length=3010bp|location=Sequence derived from alignment at scaffold_201:457978..460987- (Clytia hemisphaerica)
CAACAGTTTCTCTATCTTATTTGCACGTCATGAACATTTCCAACACGAGC
AAACTCAATGCAGACCCAAGTTCTTTGAGAAACTAGTCGAGCAATGGTGA
TCTAATTTTTCAAAAGATTTCTCACATAGCACACACATAACATCAAAACC
TCTCTTGGAAATTTCCAAAAATATTATTCCACAATGGAAATAGCTTGTTT
TATTCCGTAACAAGTTTTGATGAACACAGTTGCATTTTTTGGTATTTTTT
GTGTCCAGAGAAAAGTTTGCTCGCTGTTTGTGATGATTTTTTGAAATTTC
GACATTAAAAAAATCAGTTTTTTTTAAATAATTATCGAATTACCTTTTCA
AACCTAATGTATGATAGCTCAAAATTCAAGTTAGAGCATCCTATATACGA
TTAAAAAAGAATGAACAAAAAATTTGAATCCTGAAGCTCACAATATCTCA
ACAAACCTGTAATCTTTTTTTGGTGCACCTGGTATGTGTTAAATGCATAA
CCAGGTAGGTCCATAAAAGTATCACTTGTTTATTTATTTTTCAAAAGTCT
TTTTCAATAGTGTTAATAGTTTCTCCCAATAGATATGCTTTCATTATATT
TTTTTGTATTTTGTCCCGTTATGTCTTATGTGTTTCATTGTTTCAGATTG
TTTCAATGTTCATTGATTAGTTTTGATAACCATGTAGGTCCATAAAAGTA
CCACTTGTTGCATGTTCTTTTTGAAAAATGTAAATTTCAAGAAATGTATC
TTGATCAACCACTGATTAGAGTAGATTTTACATATCTGCAGAGGAGATCA
ATAACATATCTGTGCAAAATAATTAGAGTAAAATGAATTTGCTATTACAT
TGCTGTGCTCAATACACAACATTGGCTATTCATTTAGAGAGTGGTCAAAG
CATGGAATCAAACAACAAATTGGGTTATCTACTAAATTTTAAGATATTTG
TGCAATACTATACTACAACCATACAATTTATCATAATCATTCTAATCATA
ATGTCATGCAAAGCAAGCTAATTCCTATATGTAATTATGATAATTATGAC
ATAATACAATTAACATAAAAATAAATGAAGTTTTTTGAATTTCTAAATTT
TTAGTTTACAAACCAGAATATTTTTCTTTTCATTTTTTCAAAATTGTTTG
TGCAAATCTCAGTGCTTTTTCATTTGTTTTTATTTATTTATGTTTATCAT
TTCCTTAAATACGAGTTTGTTCCCAATCTAATCAAATGTTTCTGTTCCAG
TATGTTTTATTGCCCAAAGCATTCTATAAAGGGTTCAGTCAAAGCTGATT
CTTATTGCATTTTTTCCTGCATCATTGTATGGAATGGTGATGGTCACCAT
TCGACTTTCATCTCCTTCACTTGACGGACTCCATTTGGTATCTGTTTTCA
AAATCTCTTCATCGATTGAACTTTCAACTTTTTCTTTGACAACTTTTTTA
TTTAGGCTTGTACTTGTGCTGGAAACGGTAGAGTTAATCTTTTCCTTTTC
TTTGTGTACGCTCTCAATCACCGCTCGCTTCACAAGAGGGATCAAATATT
TTTCAAGCCACTTTACACGACCATTATGTTGGTTGTTGTTAACCATTCCT
TTGTTGTATTTCAAATCCACAAATGCACTGTTTGTTGTTACTGTCCCTAC
CAGCCAATTTTTTGGTTCCCATCGAGCAAATTTGTTTCCATGCCATGATG
GATACATTTCAAAAATGTCATTGATCCCTCCCATTTCATACAATCCCAAA
CGCTCTAGTGTTGTGCTTGCACATTGAGAGAAAATTGTTCTTATTTCAGG
CTTAATTGTCTCCAGCAAATCATTTTCTGGGTCAGATGGGTCAATAAGAT
AGGGGGCCATATGGTTACAAACATTAGGAATTCCGTTGCTACTCCAGAAA
TTTCTGTGTGATATCTNTTACAAACATTAGGAATTCCGTTGCTACTCCAG
AAATTTCTGTGTGATATCTTGAGCTCCTCAATATCTCTCAACATTACAAG
GAATTTTCTGAAGGCATTCAGATGGGACAACCTATGTCTTGCATGTTTTT
CTTCTTCAGCCGCTTCAGCTGCTGCTGCAAAAGCAATCAACTCCATGATT
GTGGATCTTCCAGAAACATAGGAATTAGGTGTCAGCAACTCTAAGACAAT
TGTCTTGTTCCAAAATTTTGCCAAGCGAGCAACTTCATGGGCAAATGCAC
TCTTTTGTTTGGTAAACTCAATACTTCTTTCAACAAATGCAACGCTCTGC
CCTTTTTTATCTCTATGGTTACTGTGGTATGTTTGGTTCAAACCAACGCA
GATATCAAAACCAATATCATCAATTGTGACCTGTAATGTGCTTGGATTCC
GTCTTGGTGTTTTCCTGAAATCTTTTTCTTCCAGATCAAATTTTTCATTA
GATATCAGAATCTCTTCAAAATTATCCAGAACTTCAGGAATTTTAACATT
GAAGCCTTGTTTGTCTTGAGGATTCACAAACACAACACAATCAAAATCTA
TGTGACCAGAAATGGCTGTCTTTTTAGCTGTACTCCCTGCCAATCTTTCT
CGGTCAATGGAATATTTTCTTGAAGCTTGAAGAAGTCTGAAAATATTGTT
CATCACTTTTTTGCCTTGACTGATCTCATTTTGCGAAGGTTTGCATTCGT
CAACATAGGATTGAATGTATCTCTTAAGTTTTTCTTCCATTGCAATCCTG
AAAAAAAGAATAGAACTTTTTACCTAACTCACAAAGTCTAGAGCAATGCA
AGAAATTCATCATTTTAATAAGATCATTCAAGTTTTCAAAATTTCATTTC
TTTTTATATTATTCTGGTGACATCAGGGCACCTTTATATCAGTAAAAAAA
TGTTGTGACTATAGTGGCCATTTTTATCTGATGTATTTTGGGGAGTCCCA
AGGAATCATTATGTAGCGTAACCTTTATTTTGAGCACACCTTTTGCTCAG
GTTTTTTGAAATAGCACACTGCTTCACTTTTGTTGTCACAGCATTTTTTG
GACCTACCCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032581	XLOC_032581	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00051417-exon-scaffold_201-1575043694:459116..460987	TCONS_00051417-exon-scaffold_201-1575043694:459116..460987	Clytia hemisphaerica	exon
TCONS_00051417-exon-scaffold_201-1575043694:457978..459062	TCONS_00051417-exon-scaffold_201-1575043694:457978..459062	Clytia hemisphaerica	exon
TCONS_00051417-exon-scaffold_201-1510915933:459116..460987	TCONS_00051417-exon-scaffold_201-1510915933:459116..460987	Clytia hemisphaerica	exon
TCONS_00051417-exon-scaffold_201-1510915933:457978..459062	TCONS_00051417-exon-scaffold_201-1510915933:457978..459062	Clytia hemisphaerica	exon
TCONS_00051417-exon-scaffold_201-1491911889:459116..460987	TCONS_00051417-exon-scaffold_201-1491911889:459116..460987	Clytia hemisphaerica	exon
TCONS_00051417-exon-scaffold_201-1491911889:457978..459062	TCONS_00051417-exon-scaffold_201-1491911889:457978..459062	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_201	supercontig	scaffold_201:457978..460987 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.378313	0.263888	0.562762	0.527627	1.27705	0.479144	1.03852	0.915265	0.213663	0.491865	1.25079	0.190671	0.257361	0.947006	0.336204	0.314277	0.480606	0.867338	0	0.54405	1.44225	1.23787	0.493085	0.702104	0.34992	0.843393	1.11654	2.0624	1.402	0.63499

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00051417 vs. Swiss-Prot (Human)

BLAST of TCONS_00051417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00051417 (transcript) - C. hemisphaerica