TCONS_00051417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051417
Unique NameTCONS_00051417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2957

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051417 ID=TCONS_00051417|Name=TCONS_00051417|organism=Clytia hemisphaerica|type=transcript|length=2957bp
CAACAGTTTCTCTATCTTATTTGCACGTCATGAACATTTCCAACACGAGC
AAACTCAATGCAGACCCAAGTTCTTTGAGAAACTAGTCGAGCAATGGTGA
TCTAATTTTTCAAAAGATTTCTCACATAGCACACACATAACATCAAAACC
TCTCTTGGAAATTTCCAAAAATATTATTCCACAATGGAAATAGCTTGTTT
TATTCCGTAACAAGTTTTGATGAACACAGTTGCATTTTTTGGTATTTTTT
GTGTCCAGAGAAAAGTTTGCTCGCTGTTTGTGATGATTTTTTGAAATTTC
GACATTAAAAAAATCAGTTTTTTTTAAATAATTATCGAATTACCTTTTCA
AACCTAATGTATGATAGCTCAAAATTCAAGTTAGAGCATCCTATatacga
ttaaaaaagaatgaacaaaaaatttgaatcctgaagctcacaatatctca
acAAACCTGTAatctttttttggtgcacctggtatgtgttaaatgcataa
ccaggtaggtccataaaagtatcacttgtttatttatttttcaaaagtct
ttttcaatagtgttaatagtttctcccaatagatatgctttcattatatt
tttttgtattttgtcccgttatgtcttatgtgtttcattgtttcagattg
tttcaatgttcattgattagttttgataaccatgtaggtccataaaagta
ccACTTGTTGCatgttctttttgaaaaatgtaaatttcaAGAAATGTATC
TTGATCAACCACTGATTAGAGTAGATTTTACATATCTGCAGAGGAGATCA
ATAACATATCTGTGCAAAATAATTAGAGTAAAATGAATTTGCTATTACAT
TGCTGTGCTCAATACACAACATTGGCTATTCATTTAGAGAGTGGTCAAAG
CATGGAATCAAACAACAAATTGGGTTATCTActaaattttaagatatttg
tgCAATACTATACTACAACCATACAATTTATCATAATCATTCTAATCATA
ATGTCATGCAAAGCAAGCTAATTCCTATATGTAATTATGATAATTATGAC
ATAATACaattaacataaaaataaatgaagttttttgaatttctaaattt
ttagtttacAAACcagaatatttttcttttcattttttcaaaattgtttg
tgcaaatCTCAGtgctttttcatttgtttttatttatttatgtttATCAT
TTCCTTAAATACGAGTTTGTTCCCAATCTAATCAAATGTTTCTGTTCCAG
TATGTTTTATTGCCCAAAGCATTCTATAAAGGGTTCAGTCAAAGCTGATT
CTTATTGCATTTTTTCCTGCATCATTGTATGGAATGGTGATGGTCACCAT
TCGACTTTCATCTCCTTCACTTGACGGACTCCATTTGGTATCTGTTTTCA
AAATCTCTTCATCGATTGaactttcaactttttctttgacaactttttta
TTTAGGCTTGTACTTGTGCTGGAAACGGTAGAGTTAAtcttttccttttc
tttgtGTACGCTCTCAATCACCGCTCGCTTCACAAGAGggatcaaatatt
tttcaagccACTTTACACGACCATTATGTTGGTTGTTGTTAACCATTCCT
TTGTTGTATTTCAAATCCACAAATGCACTGTTTGTTGTTACTGTCCCTAC
CAGCCAATTTTTTGGTTCCCATCGAGCAAATTTGTTTCCATGCCATGATG
GATACATTTCAAAAATGTCATTGATCCCTCCCATTTCATACAATCCCAAA
CGCTCTAGTGTTGTGCTTGCACATTGAgagaaaattgttcttatttcagG
CTTAATTGTCTCCAGCAAATCATTTTCTGGGTCAGATGGGTCAATAAGAT
AGGGGGCCATATGGTTACAAACATTAGGAATTCCGTTGCTACTCCAGAAA
TTTCTGTGTGATATCTTGAGCTCCTCAATATCTCTCAACATTACAAGGAA
TTTTCTGAAGGCATTCAGATGGGACAACCTATGTCTTGcatgtttttctt
cttcagccGCTTCAGCTGCTGCTGCAAAAGCAATCAACTCCATGATTGTG
GATCTTCCAGAAACATAGGAATTAGGTGTCAGCAACTCTAAGACAATTGT
CTTGTTCCAAAATTTTGCCAAGCGAGCAACTTCATGGGCAAATGCACTCT
TTTGTTTGGTAAACTCAATACTTCTTTCAACAAATGCAACGCTCTGCCCT
TTTTTATCTCTATGGTTACTGTGGTATGTTTGGTTCAAACCAACGCAGAT
ATCAAAACCAATATCATCAATTGTGACCTGTAATGTGCTTGGATTCCGTC
TTGGTGttttcctgaaatctttttcttccagatcaaatttttcattagAT
ATCAGAATCTCTTCAAAATTATCCAGAACTTCAGGAATTTTAACATTGAA
GCCTTGTTTGTCTTGAGGATTCACAAACACAACACAATCAAAATCTATGT
GACCAGAAATGGCTGTCTTTTTAGCTGTACTCCCTGCCAATCTTTCTCGG
TCAATGGAATATTTTCTTGAAGCTTGAAGAAGTCTGAAAATATTGTTCAT
CACTTTTTTGCCTTGACTGATCTCATTTTGCGAAGGTTTGCATTCGTCAA
CATAGGATTGAATGTATCTCTTAAGTTTTTCTTCCATTGCAATCCTGAAA
AAAAGAATAGAACTTTTTACCTAACTCACAAAGTCTAGAGCAAtgcaaga
aattcatcattttaATAAGATCattcaagttttcaaaatttcatttcttt
ttatattattCTGGTGACATCAGGGCACCTTTATATCAGTAAAAAAATGT
TGTGACTATAGTGGCCATTTTTATCTGATGTATTTTGGGGAGTCCCAAGG
AATCATTATGTAGCGTAACCTTTATTTTGAGCACACCTTTTGCTCAGGTT
TTTTGAAATAGCACACTGCTTCACTTTTGTTGTCACagcattttttggac
ctaccca
Run BLAST on NCBI

transcript from alignment at scaffold_201:457978..460987-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051417 ID=TCONS_00051417|Name=TCONS_00051417|organism=Clytia hemisphaerica|type=transcript|length=3010bp|location=Sequence derived from alignment at scaffold_201:457978..460987- (Clytia hemisphaerica)
CAACAGTTTCTCTATCTTATTTGCACGTCATGAACATTTCCAACACGAGC AAACTCAATGCAGACCCAAGTTCTTTGAGAAACTAGTCGAGCAATGGTGA TCTAATTTTTCAAAAGATTTCTCACATAGCACACACATAACATCAAAACC TCTCTTGGAAATTTCCAAAAATATTATTCCACAATGGAAATAGCTTGTTT TATTCCGTAACAAGTTTTGATGAACACAGTTGCATTTTTTGGTATTTTTT GTGTCCAGAGAAAAGTTTGCTCGCTGTTTGTGATGATTTTTTGAAATTTC GACATTAAAAAAATCAGTTTTTTTTAAATAATTATCGAATTACCTTTTCA AACCTAATGTATGATAGCTCAAAATTCAAGTTAGAGCATCCTATATACGA TTAAAAAAGAATGAACAAAAAATTTGAATCCTGAAGCTCACAATATCTCA ACAAACCTGTAATCTTTTTTTGGTGCACCTGGTATGTGTTAAATGCATAA CCAGGTAGGTCCATAAAAGTATCACTTGTTTATTTATTTTTCAAAAGTCT TTTTCAATAGTGTTAATAGTTTCTCCCAATAGATATGCTTTCATTATATT TTTTTGTATTTTGTCCCGTTATGTCTTATGTGTTTCATTGTTTCAGATTG TTTCAATGTTCATTGATTAGTTTTGATAACCATGTAGGTCCATAAAAGTA CCACTTGTTGCATGTTCTTTTTGAAAAATGTAAATTTCAAGAAATGTATC TTGATCAACCACTGATTAGAGTAGATTTTACATATCTGCAGAGGAGATCA ATAACATATCTGTGCAAAATAATTAGAGTAAAATGAATTTGCTATTACAT TGCTGTGCTCAATACACAACATTGGCTATTCATTTAGAGAGTGGTCAAAG CATGGAATCAAACAACAAATTGGGTTATCTACTAAATTTTAAGATATTTG TGCAATACTATACTACAACCATACAATTTATCATAATCATTCTAATCATA ATGTCATGCAAAGCAAGCTAATTCCTATATGTAATTATGATAATTATGAC ATAATACAATTAACATAAAAATAAATGAAGTTTTTTGAATTTCTAAATTT TTAGTTTACAAACCAGAATATTTTTCTTTTCATTTTTTCAAAATTGTTTG TGCAAATCTCAGTGCTTTTTCATTTGTTTTTATTTATTTATGTTTATCAT TTCCTTAAATACGAGTTTGTTCCCAATCTAATCAAATGTTTCTGTTCCAG TATGTTTTATTGCCCAAAGCATTCTATAAAGGGTTCAGTCAAAGCTGATT CTTATTGCATTTTTTCCTGCATCATTGTATGGAATGGTGATGGTCACCAT TCGACTTTCATCTCCTTCACTTGACGGACTCCATTTGGTATCTGTTTTCA AAATCTCTTCATCGATTGAACTTTCAACTTTTTCTTTGACAACTTTTTTA TTTAGGCTTGTACTTGTGCTGGAAACGGTAGAGTTAATCTTTTCCTTTTC TTTGTGTACGCTCTCAATCACCGCTCGCTTCACAAGAGGGATCAAATATT TTTCAAGCCACTTTACACGACCATTATGTTGGTTGTTGTTAACCATTCCT TTGTTGTATTTCAAATCCACAAATGCACTGTTTGTTGTTACTGTCCCTAC CAGCCAATTTTTTGGTTCCCATCGAGCAAATTTGTTTCCATGCCATGATG GATACATTTCAAAAATGTCATTGATCCCTCCCATTTCATACAATCCCAAA CGCTCTAGTGTTGTGCTTGCACATTGAGAGAAAATTGTTCTTATTTCAGG CTTAATTGTCTCCAGCAAATCATTTTCTGGGTCAGATGGGTCAATAAGAT AGGGGGCCATATGGTTACAAACATTAGGAATTCCGTTGCTACTCCAGAAA TTTCTGTGTGATATCTNTTACAAACATTAGGAATTCCGTTGCTACTCCAG AAATTTCTGTGTGATATCTTGAGCTCCTCAATATCTCTCAACATTACAAG GAATTTTCTGAAGGCATTCAGATGGGACAACCTATGTCTTGCATGTTTTT CTTCTTCAGCCGCTTCAGCTGCTGCTGCAAAAGCAATCAACTCCATGATT GTGGATCTTCCAGAAACATAGGAATTAGGTGTCAGCAACTCTAAGACAAT TGTCTTGTTCCAAAATTTTGCCAAGCGAGCAACTTCATGGGCAAATGCAC TCTTTTGTTTGGTAAACTCAATACTTCTTTCAACAAATGCAACGCTCTGC CCTTTTTTATCTCTATGGTTACTGTGGTATGTTTGGTTCAAACCAACGCA GATATCAAAACCAATATCATCAATTGTGACCTGTAATGTGCTTGGATTCC GTCTTGGTGTTTTCCTGAAATCTTTTTCTTCCAGATCAAATTTTTCATTA GATATCAGAATCTCTTCAAAATTATCCAGAACTTCAGGAATTTTAACATT GAAGCCTTGTTTGTCTTGAGGATTCACAAACACAACACAATCAAAATCTA TGTGACCAGAAATGGCTGTCTTTTTAGCTGTACTCCCTGCCAATCTTTCT CGGTCAATGGAATATTTTCTTGAAGCTTGAAGAAGTCTGAAAATATTGTT CATCACTTTTTTGCCTTGACTGATCTCATTTTGCGAAGGTTTGCATTCGT CAACATAGGATTGAATGTATCTCTTAAGTTTTTCTTCCATTGCAATCCTG AAAAAAAGAATAGAACTTTTTACCTAACTCACAAAGTCTAGAGCAATGCA AGAAATTCATCATTTTAATAAGATCATTCAAGTTTTCAAAATTTCATTTC TTTTTATATTATTCTGGTGACATCAGGGCACCTTTATATCAGTAAAAAAA TGTTGTGACTATAGTGGCCATTTTTATCTGATGTATTTTGGGGAGTCCCA AGGAATCATTATGTAGCGTAACCTTTATTTTGAGCACACCTTTTGCTCAG GTTTTTTGAAATAGCACACTGCTTCACTTTTGTTGTCACAGCATTTTTTG GACCTACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032581XLOC_032581Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051417-exon-scaffold_201-1575043694:459116..460987TCONS_00051417-exon-scaffold_201-1575043694:459116..460987Clytia hemisphaericaexon
TCONS_00051417-exon-scaffold_201-1575043694:457978..459062TCONS_00051417-exon-scaffold_201-1575043694:457978..459062Clytia hemisphaericaexon
TCONS_00051417-exon-scaffold_201-1510915933:459116..460987TCONS_00051417-exon-scaffold_201-1510915933:459116..460987Clytia hemisphaericaexon
TCONS_00051417-exon-scaffold_201-1510915933:457978..459062TCONS_00051417-exon-scaffold_201-1510915933:457978..459062Clytia hemisphaericaexon
TCONS_00051417-exon-scaffold_201-1491911889:459116..460987TCONS_00051417-exon-scaffold_201-1491911889:459116..460987Clytia hemisphaericaexon
TCONS_00051417-exon-scaffold_201-1491911889:457978..459062TCONS_00051417-exon-scaffold_201-1491911889:457978..459062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:457978..460987 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.378313 0.263888 0.562762 0.527627 1.27705 0.479144 1.03852 0.915265 0.213663 0.491865 1.25079 0.190671 0.257361 0.947006 0.336204 0.314277 0.480606 0.867338 0 0.54405 1.44225 1.23787 0.493085 0.702104 0.34992 0.843393 1.11654 2.0624 1.402 0.63499
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top