TCONS_00051406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051406
Unique NameTCONS_00051406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051406 ID=TCONS_00051406|Name=TCONS_00051406|organism=Clytia hemisphaerica|type=transcript|length=1835bp
TGATCATCGAGtccaaaacaacaaaatcaatGGATGAGGTTCTCAAGAAT
TTGTGGAGAAAAAACCGAAGCCGACGTTGATTGATTTGATGGAAGGGTAA
AGTAGAAGttTGTTGGTCAGGAATGGCTTTCAATCTAGGGGGAGgtggtg
atgatgatgatagTGATGATCCATTGCAAGATGATCCATGGCCATCACAC
GCCTCACACCCTTTTGTGTTGGAAGACATGGATGATGGGGATTTTGTCAT
CAGAACAATCCCCTCTGATGAAATAATATGCGAGACTGTGGAAAGAAAGG
CAAAATGCATCAGTAAATATCTTATGGGTGATGTTTTAGGTGAGGGTGCA
TATGGGAAAGTCAAGGAGGTTCTTGATATAGTGACACTACACAGGCGTGC
TGTCAAGATTATGAAAAAGCGTAAGCTACGTAAGATTCCACATGGGGAAG
AAAATGTTAAACGTGAAATTTGGATGTTAAAAAGAACTAGCCATAAGAAT
GTTATAGAACTGGTTGATgtaatgcaaaataaagagcgaGGTAAAATCTA
CATGGTAATGGATTATTGTGTATGTAATATGCATgaaatgctcaaaaaat
ctGCCAATCACTTCTTTCCTGAGTGGCAAGCTCACTTCTATTTTACGCAG
CTTATTGAGGGGTTGGAGTATTTACATAGCATGGGAATTATACATAAAGA
TATCAAACCATCCAATCTTCTCATCAACATggatcaaactttgaaaattt
cggaCTTTGGAGTTGCAGAACAGTTAAATCCATTTGCTCCTGACGACTCA
TGTATTACCAGTCAGGGTTCCCCAATGTTTCAACCTCCTGAAATTGCAAA
CGGAGTAGATGTGTTTTCAGGATATAAACTTGATATTTGGGCATGTGGTG
TAACTTTGTTCAATATCATTACAGGTCAATACCCCTATGAAGGGGACACC
ATTTATCGTTTGTTTGATAACATTGGTAAAAAGGAATGTGTCATTCCAAC
AACTCTAGACCCTGCTTTACAAAAATTACTTGCTGGTGTGTTATGTAGAG
ATTTTAAAAAGCGCTTCAGTATTGAAGAAATTCGCAAACATACTTGGTTT
CGTAGAAATCAACATCAAGTTGAAAAAGGTGTTGATTTTCCTTCAAACGA
TGGTCATGATAGTCTCTTAGATGAAAGCAAAGAACTAACAACAATACCCT
TTCTTGATCGGCTAAATAAGGATGAGGCTGTTTTGATACCAAACGACTCA
TGTGTCTCGACATCAGATATTTCAGCAATGGATACCCCAACTAGACCAGA
TAATTTCAACAATCATTTTCTTAGACGTCAATCTACCCCTGAATTTGAAG
TTGAAAATTCGAAAGATGGTGATAAAAAGTCAAAGTCAGGTAAATCACGG
TTTACACCTAACACTTGTAAAAGCATGTAAGAGTGCAATTGCATCAGTAC
AATAATACACAAggaaaaaaaagtcaaataatatttatttaataGGTTTT
CAATTTATATATGGTAATAATGTTTTAGCCAAagtatttgttttttaaaa
gtactttaattttttaaactttagcCAAAGTATAGTTTGCAAAGAATCAC
ATTTGTTGCATTTTATTCAGATTCATGGTTATTGTTCTTATACAATATTC
ATTTCAATTTGGAAgagttttctttcaaaaacagCTGCTAGTCATTctcc
tttttaaataatattgAATTCAATGCATATAGCTAATTATTTTTGTtcac
atttttttcatattgtAATTATTGTATtagaatgatttttaaaatttaaa
gtcttcaagacaaaataaattttagtcaATTTCCA
Run BLAST on NCBI

protein sequence of TCONS_00051406-protein

>TCONS_00051406-protein ID=TCONS_00051406-protein|Name=TCONS_00051406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp
MAFNLGGGGDDDDSDDPLQDDPWPSHASHPFVLEDMDDGDFVIRTIPSDE
IICETVERKAKCISKYLMGDVLGEGAYGKVKEVLDIVTLHRRAVKIMKKR
KLRKIPHGEENVKREIWMLKRTSHKNVIELVDVMQNKERGKIYMVMDYCV
CNMHEMLKKSANHFFPEWQAHFYFTQLIEGLEYLHSMGIIHKDIKPSNLL
INMDQTLKISDFGVAEQLNPFAPDDSCITSQGSPMFQPPEIANGVDVFSG
YKLDIWACGVTLFNIITGQYPYEGDTIYRLFDNIGKKECVIPTTLDPALQ
KLLAGVLCRDFKKRFSIEEIRKHTWFRRNQHQVEKGVDFPSNDGHDSLLD
ESKELTTIPFLDRLNKDEAVLIPNDSCVSTSDISAMDTPTRPDNFNNHFL
RRQSTPEFEVENSKDGDKKSKSGKSRFTPNTCKSM
Run BLAST on NCBI

transcript from alignment at scaffold_201:230986..241237-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051406 ID=TCONS_00051406|Name=TCONS_00051406|organism=Clytia hemisphaerica|type=transcript|length=10252bp|location=Sequence derived from alignment at scaffold_201:230986..241237- (Clytia hemisphaerica)
TGATCATCGAGTCCAAAACAACAAAATCAATGGATGAGGTTCTCAAGAAT
TTGTGGAGAAAAAACCGAAGCCGACGTTGATTGATTTGATGGAAGGGTAA
AGTAGAAGGTAAAGTCTTTCTTTATTGCTTTGACCTAACAGTCAGGCAAA
TCCTTGCATTTGCACGGGGTGTGCATTTGCAACGGGTTTTCCCGACAGTT
ACATCAATATGCCTTCTTTTACCTGTCTTTAAAAATATAAATAAAAGTAA
TCACGGAAAAGGACGCGAAAAAAAAAGACATAAGTGTGAGAACAGAGTAA
TCAAACTCGTTAGAAAAAGTACCATTAGAAGTCATAAAAAATCAACCTGA
ATAAATGCAATCGAAATTCCAGAGAACTTCATAATGCCCAAACAACATCA
GTCTGGCTGGGAAATCCTCTCAATTGCACGGTTATCAAAATGGCAGAATT
ATTAAGCGTGTAATTACACGCTTATCGTAATTGTTCTGAAACGGGCGGTA
AGCGTTAAGCAAGATTGACGGCTGACGGCTTTTGCGGTGAGCGTGTAATT
GCACGCTTTAAAATTTCCTATATTTTTGACACGTAATTCCTTCCAAAAGC
TCTGTTGAATTTCAAAAGCCTAGGGCAGTTTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTGGATTGCCCGTTAAACCATGCCTTCGCCCGAATTAGAGAATTCTGAA
CCCCTTGAAATCCCTAAGCAATTTCAACCGGGGCGGGAGCGGGTGTAAAT
TATAACCATGCAATTACGCGCTTACGCCCTCGGAACATAAGCGTGCAATT
GAGAGGATTTCCCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNACGATAAATGTATCAAGGTCTGTTTTATTTACCCCC
TGGTGACTTAACAAAAGAGACTTAACTCGATGTTACAATCCAATTATTGA
AAGTTTGTCTCGGCTTTTTTATAATGAGTGAGACATACGTTCTCTGATTA
CGCAATTTTGATATTGACATTTTTGAGGCATTTTGATGTAACTGCCTGAC
CCTGTGCAAATGAGCTAGAACGCGTCAGGCAATTACGTCAATTTCAACTT
TAAAGTGAAAACGGGGGAAAATGAAGATGAACGGGGCTTTCATTTTTTCT
TTAAGAGATTCTTCATTCGTTAATAAAGAATTGTGTCCATGGAAAAAAGA
TTCCACCCATGCAATCTTTTTTAATCAAGCAAAATATTTTTGGTAAATTT
GAGTATTTCTAAACGACCGCGTCTAGATCGCGCGATTTCGCTAGTGTGAC
TAACTGCCTAAAGGACTATCCTGTTTTAAGTCTAGACTGATAGGTTCGTT
TTGCATTTTCAATCTAACCACGGCAAATTCGACATAATTTTTGCATACAC
TTCAAGATGGCAAATGGAAAGGCAAAAGGGTCTATGGGGGTATGGGTGAT
GAGTGACAGGAATACAGCATATTGACAAATGTAAAAGGGCTATCTGAAAT
AGACCTATGGCTAAATCTTCATGATGCACCGACAAGCACGGAGACTTAGA
AAATTTTTTGAAACTTTTCAATACTTTACCGATGCTAATCAAAAATAGTG
TGACATTGTAAAAAATGCTCAAAATCAACTTTTTGGAATAACAAAGATTA
ATGCTGCTTGAAAAAAAATCTATGTTTACAAACATTCCCTCCTCTCCAAG
TTGAACAATAAACTATATATATTGCAAGAACTCATGAAACAAAACATCTA
ACAAGATGACTAAAATGTCAGATGTCAATTAATGTGATAAAAAAAGTGCG
AGTTGTAAAAATAATTACCTCTATTATTCTGAATCCCTTGCTCGTGTTTA
AAACGTTAACAATTTTNAGTTGTAAAAATAATTACCTCTATTATTCTGAA
TCCGTTGCTCGTGTTTAAAACATTAACAATTTTGCAATAAAAAGTTATAT
TTTGGTTCAATTGGTTCAGTGTATCAAATCCCTCAGTTTAGTTGACACTT
TGGTATCTTCATTGCGTCATAGCAAAAAGTTTGTTTTTATTTTAGTTTGT
ATCTTTGAAAGACCCCATCGGATTTAGGCAGGGCTGTCGGATTTAGGACC
ACTCAGGGTATATCGTTTACTTGACTCGCAAGCAAAAAAATGCGCCGCAA
AGCTTCTAAAGGGCCAGACGATCTCAATCGAACGGAATCAACGATCAAAC
TAGTCGAACCAAATCGAACGCAATCGACCAATTGAAATTCGATTGTCGAA
CGTCAAAATTCTAGGTAATATTCCATTGCCTCGATTGTTGTTCGACTGGT
TCGATCGTCGATTCCGTTCGATTGAGATCGTCTGGCTTAATTCTTGCAGC
TTCCCAACATCCAAGCTCTCAAACATCACAAGCCGAATGAAATTACTTTC
GATTTCCCATAGAAATTATGCGCTGAACAATCCGGGGGTCAACGAATCAA
CGATCAAACGCAATCGAACATCAATCAAACGCAATCGAATATCAATCGAA
TCTGAAAATTGCGGTAATATTCAATTGAGATTCGATTGCGTTCGACAATC
GAATTTCAATCGGTCGATTGCGTTCGATTTGGTTCGACTGGTTCGATCGC
CGATTCCGTTCGATTGAGATCGTCTGGAAAGGGATTCATGAAAAAATAAC
CCCTAGCGCTTTTTAATGAAATTAGCATTTTCAAAAACTATGAGAAATTG
CCTAAAATTTGAGCCATAGATGAAAAAATTTGAGCCATAGATGAAAAAAT
TTGAGCCAAGCCAACCTTAAAAACTAATTTGAAGATGAACTTCCCAAGAA
AAAGATCTACAGGGGAGACAAAACCCACCTAGATCTGCGCACCGCAGGAT
AGGCTATTTCCCAGAAATTTTGCCAGACCTCAAACACTGACCCATTTATA
TGTGCGGAATTATTTTTACTTTAGCGTATAAACAAGGCCTTAGAAATCAA
AGCGCTGTCTTGGGAATTGAATGACAAGATTTGGTTGGTTGATATTCTGG
TTGCTGCACGTTTGCAATCAGTTATTTTGTCTTATTTTAAGTTTTCAAGT
TTTAATCAATTGTCTTGGGAACTTGAACTTGATTCAGGTAACTCTCATCC
TTGTTGTTGCAAATACATCCTGTAGATGACTGATATTGTTTTTTCTGAAA
GCTTGATTTCCTAGTGTCACTAACTGTTAGGTGGACGCGACGCCATTTTA
AATCAATTTAACACTGCTGGGGTACCATCTTGAAATTATGTCATTATGTG
CATACATTTATTTGCAGCCATGGGATTCATGCAGGAAAATCTGTCAACAG
GGGTTCAGCTGATTTCTAGGTGAATCAAGCTCTATAATTTTAGAACTTTG
TCTGGCTGAGGTAAAACTTATTTTTTCAAAATTTTTTAGCTTGGATATCC
AGGCTAACATTTACAAAGCCTAAACACAAAGATAACAAAATGTTGATGAA
ACAACGTTCAAGAAACGCCTCTTTTTGCAATTTAGTCCATTGTTATTATA
TACTTGTACATGCAGGGTTTTCAGTAATTTTTAGGAAGGAAGGAGACTGT
AGGTCAGAGGTCGGCTACTATTTTAGTGATGCAGCTAAGTGAGAGTCCCC
TGAGGGTCCACCATATGGTTGGGCCCAAAGGGGAAGAAAATTTTGAAAAA
TCAGGCAGTTTTAAGTACTGAAAAAGCGTTTTTTAGCCATAAAACTATAG
AAAAATCTAAACAAAAAATTATAATTTTTAGGTAAAAGTGTAATATTAAA
ATATACACCTAATATGTGATTAGATTATATACCTAAATATACCTGAAAAT
CATCAGATTATGAGGAGAGAAATGAAAAAGTTTCCTCCTGCTTAGAATTG
AATGGCACTCTTTTTTGGGTTTCTATGTCCATCATATTTTCCTTTTCAAC
TCCAACCTGATTGATTTTCTGTGAATTTTTGTTGTAATTTGTATTGTCTT
TTTGTTTTGTGGGTTTAGTCTTTAGTGTTTCCATTTTGAGTAGTTGAAGG
TTTTTTTGAGACGGTAAAGCTTGGCTCCAAAGGAGTCAATAAAGAATTCC
GTGAATTTCCCTTTTGTCCACTATTTCTCTCAGTTTGAACCACAAGTTAT
TTTGTGGTTTAGAGATGCTGGCTAAATCGATCTAGCTAGCCAGGGTGCAA
TATGCAGTGCTGATGAGTCCTAATAAGGACGACATGCATACGCTGCTCTG
CCACCCAAATCTCCTGAGTGATATAGTATATAGTTAAACAGAAATTCTTA
TTTTCTTCACATATATATATTCAGGGTTGTTTTAAAAACATATCTTGTTA
ATTTCGCCTAGCGAAAGTATTACAATCGTCTTTCGCGGCGGTGTCGTCGG
AAAAAAAATTAGAAAACGAAAGTACTCGATACGGTGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTCTTATA
AGCATATACTTTATAAGAATCAAATCAACAACTCTTGATAGACTGTGATA
TACCTTTCGGTAATTAGTTCTTACAAAGCAAACAAGGGATGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAACAAGGGATGGCG
CACAATATAAGCATATTTATTTTTCTTATAAGCATATACTTTATAAGAAT
CAAATCAATAACTCTTGATAGACGATGNNNNNNNNNNNNAAGTAAACAAG
GGATGGCGCACAATATAAGCATATTTATTTTTCTTATAAGCATATACTTT
ATAAGAATCAAATCAATAACTCTTGATAAATGGTGATATACCTTTCGGTA
ATTAGCTCTTACAAAGTAAACAAGAGATGGCAGGCAATATGAGCATATTT
ATTTTTCTTATAAGCATATACTTTATAAGAATCAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNACTCTTTATAGATGGTGATATGCCCTTCAGT
TATTAGTTCTTAAGAATTAAACAACCATTGTTCGTAAATTGATCTTATCT
TTTTAGCGATTTTGAGCCTCGTTGCTCATATCAAATAGTTTCATCAAGGG
TCGATGTAAAGTAGACTTCAGATTAGCTTTCATCTCTACTTCTTGTTTTT
TCTCATGCAGTTTAAACTTTAGGCGAAATTTTCGACTTTAAGTCGTCTTG
TTTGAGTTTTTATTAAAAGTACATCATTTAAAAAAAACCCTTATTATCAA
GTTAAGTGCTTATAAAATGAATATGCTAGCAGACGTTAGGCATGTTTAAA
AGTAAACAAAGAGAGTGAATGAGAAAATATTACACTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTGTTATAATCATGATTCTTTTAAATATAAGAAGC
CTGTGATTTTACTTGAAGAAACACTCAAGAGAATGATATAAATGAAGTCT
TTCATTAACAAGAAGATTTTATGATCAAAAAAAAAAAATTCAGAAACAAA
ATCATACACCAAGGATATCTAGAAAAGACTTTATGGCCGGCAAATAAACC
CCCTGTACACAAGTTACATACTTAGCAAATCCAATCTTAGCAGCTTAGTA
AATAAGGAACTGGATAAGGAACTTTGAGGCTGAAATTATCTCCAAAAATA
AGGAACTCCAGGCTCGGAGCCAAGTTAAGGCTCTTTATAAAAAAAACGTG
TAGTGGAACACACGCGAATGTCTGGAACCCAGAAAATTATTGGCAAAACG
ATTAAATATTTTCATATTAATATTATTAAAATTATTTTTATATTGTTAAT
TAGTGGAAAACGATTAAATATTTTCATATTATTAAAATTATTTTTATATT
GTTAATACATTGTATATTGTTAATATAAATAATCGCTTTGCGTACTCATC
GTTTTTTTTATTTTTAAAATTGTAGTACTTATACTATAGATAATTTTGAT
GGAAGTTGTTTGAGTGTTTTTACAAGATTCTTGACAGAAGATGTTTTGTT
TTATTGTCAAATGAAAACAGTGACATTATTAATTTTGTTACATCTGCACT
TTAATAAAGTCTTGATTCCAATTGAAGATTCTATTCTGTTATTTACAATG
CTTTTTTAGATCTTTAGAGTTATACTTTACTAAGTGAATTCCCTCAGCTG
CCTTTGTTAATGTTTTTTGGGTGAACTTTAATATGGATCAGACAAATAGT
TTGACTGCTTAAATTTTTGTTGTTAAGATAACTAGACTTTGTGAAATATA
GTGTGTTATTTATTCATCCAGTGGTTCAGTCAAATCAGTTTAAAAAATGG
GTAAAAATTGTCCTGTATCTATTGCCCAAATGGACCTTTCGCCTTGTCTT
TTTGTTCTACATTTCTATAAAAAAAATTTAACTCCTCTCAAATTCATACA
AATGTTGTAATTGTGTCAACTAGATAAAAAACAGGGTGAAATGGCTAATC
TATTGATAAAATTAAGTTCATTAATATGATAATAATACATGGTGGGATAA
AGTCTTGGATGGCCATCCATTTAGCTAGTTTTCTTTGTTCTGAGCAGAGT
CAGCGCTCGTAAATAGATTCATGACAAACTTGTCAATCAAAAATATGACT
TTGATTTCTCTTTGAAAAGAAATTTTTGGAGAACTCTTTAATATCAACAC
CTTTGTGCTTTGCTTAAAAAGGAATGCTACAATGCTTGGCTGATCCGATT
AACATTGTTTTTATTTTTTTTGTAGTTTGTTGGTCAGGAATGGCTTTCAA
TCTAGGGGGAGGTGGTGATGATGATGATAGTGATGATCCATTGCAAGATG
ATCCATGGCCATCACACGCCTCACACCCTTTTGTGTTGGAAGACATGGAT
GATGGGGATTTTGTCATCAGAACAATCCCCTCTGATGAAATAATATGCGA
GACTGTGGAAAGAAAGGCAAAATGCATCAGTAAATATCTTATGGGTGATG
TTTTAGGTGAGGGTGCATATGGGAAAGTCAAGGAGGTTCTTGATATAGTG
ACACTACACAGGCGTGCTGTCAAGATTATGAAAAAGCGTAAGCTACGTAA
GATTCCACATGGGGAAGAAAATGTTAAACGTGAAATTTGGATGTTAAAAA
GAACTAGCCATAAGAATGTTATAGAACTGGTTGATGTAATGCAAAATAAA
GAGCGAGGTAAAATCTACATGGTAATGGATTATTGTGTATGTAATATGCA
TGAAATGCTCAAAAAATCTGCCAATCACTTCTTTCCTGAGTGGCAAGCTC
ACTTCTATTTTACGCAGCTTATTGAGGGGTTGGAGTATTTACATAGCATG
GGAATTATACATAAAGATATCAAACCATCCAATCTTCTCATCAACATGGA
TCAAACTTTGAAAATTTCGGACTTTGGAGTTGCAGAACAGTTAAATCCAT
TTGCTCCTGACGACTCATGTATTACCAGTCAGGGTTCCCCAATGTTTCAA
CCTCCTGAAATTGCAAACGGAGTAGATGTGTTTTCAGGATATAAACTTGA
TATTTGGGCATGTGGTGTAACTTTGTTCAATATCATTACAGGTCAATACC
CCTATGAAGGGGACACCATTTATCGTTTGTTTGATAACATTGGTAAAAAG
GAATGTGTCATTCCAACAACTCTAGACCCTGCTTTACAAAAATTACTTGC
TGGTGTGTTATGTAGAGATTTTAAAAAGCGCTTCAGTATTGAAGAAATTC
GCAAACATACTTGGTTTCGTAGAAATCAACATCAAGTTGAAAAAGGTGTT
GATTTTCCTTCAAACGATGGTCATGATAGTCTCTTAGATGAAAGCAAAGA
ACTAACAACAATACCCTTTCTTGATCGGCTAAATAAGGATGAGGCTGTTT
TGATACCAAACGACTCATGTGTCTCGACATCAGATATTTCAGCAATGGAT
ACCCCAACTAGACCAGATAATTTCAACAATCATTTTCTTAGACGTCAATC
TACCCCTGAATTTGAAGTTGAAAATTCGAAAGATGGTGATAAAAAGTCAA
AGTCAGGTAAATCACGGTTTACACCTAACACTTGTAAAAGCATGTAAGAG
TGCAATTGCATCAGTACAATAATACACAAGGAAAAAAAAGTCAAATAATA
TTTATTTAATAGGTTTTCAATTTATATATGGTAATAATGTTTTAGCCAAA
GTATTTGTTTTTTAAAAGTACTTTAATTTTTTAAACTTTAGCCAAAGTAT
AGTTTGCAAAGAATCACATTTGTTGCATTTTATTCAGATTCATGGTTATT
GTTCTTATACAATATTCATTTCAATTTGGAAGAGTTTTCTTTCAAAAACA
GCTGCTAGTCATTCTCCTTTTTAAATAATATTGAATTCAATGCATATAGC
TAATTATTTTTGTTCACATTTTTTTCATATTGTAATTATTGTATTAGAAT
GATTTTTAAAATTTAAAGTCTTCAAGACAAAATAAATTTTAGTCAATTTC
CA

Coding sequence (CDS) from alignment at scaffold_201:230986..241237-

>TCONS_00051406 ID=TCONS_00051406|Name=TCONS_00051406|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at scaffold_201:230986..241237- (Clytia hemisphaerica)
ATGGCTTTCAATCTAGGGGGAGGTGGTGATGATGATGATAGTGATGATCC
ATTGCAAGATGATCCATGGCCATCACACGCCTCACACCCTTTTGTGTTGG
AAGACATGGATGATGGGGATTTTGTCATCAGAACAATCCCCTCTGATGAA
ATAATATGCGAGACTGTGGAAAGAAAGGCAAAATGCATCAGTAAATATCT
TATGGGTGATGTTTTAGGTGAGGGTGCATATGGGAAAGTCAAGGAGGTTC
TTGATATAGTGACACTACACAGGCGTGCTGTCAAGATTATGAAAAAGCGT
AAGCTACGTAAGATTCCACATGGGGAAGAAAATGTTAAACGTGAAATTTG
GATGTTAAAAAGAACTAGCCATAAGAATGTTATAGAACTGGTTGATGTAA
TGCAAAATAAAGAGCGAGGTAAAATCTACATGGTAATGGATTATTGTGTA
TGTAATATGCATGAAATGCTCAAAAAATCTGCCAATCACTTCTTTCCTGA
GTGGCAAGCTCACTTCTATTTTACGCAGCTTATTGAGGGGTTGGAGTATT
TACATAGCATGGGAATTATACATAAAGATATCAAACCATCCAATCTTCTC
ATCAACATGGATCAAACTTTGAAAATTTCGGACTTTGGAGTTGCAGAACA
GTTAAATCCATTTGCTCCTGACGACTCATGTATTACCAGTCAGGGTTCCC
CAATGTTTCAACCTCCTGAAATTGCAAACGGAGTAGATGTGTTTTCAGGA
TATAAACTTGATATTTGGGCATGTGGTGTAACTTTGTTCAATATCATTAC
AGGTCAATACCCCTATGAAGGGGACACCATTTATCGTTTGTTTGATAACA
TTGGTAAAAAGGAATGTGTCATTCCAACAACTCTAGACCCTGCTTTACAA
AAATTACTTGCTGGTGTGTTATGTAGAGATTTTAAAAAGCGCTTCAGTAT
TGAAGAAATTCGCAAACATACTTGGTTTCGTAGAAATCAACATCAAGTTG
AAAAAGGTGTTGATTTTCCTTCAAACGATGGTCATGATAGTCTCTTAGAT
GAAAGCAAAGAACTAACAACAATACCCTTTCTTGATCGGCTAAATAAGGA
TGAGGCTGTTTTGATACCAAACGACTCATGTGTCTCGACATCAGATATTT
CAGCAATGGATACCCCAACTAGACCAGATAATTTCAACAATCATTTTCTT
AGACGTCAATCTACCCCTGAATTTGAAGTTGAAAATTCGAAAGATGGTGA
TAAAAAGTCAAAGTCAGGTAAATCACGGTTTACACCTAACACTTGTAAAA
GCATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032577XLOC_032577Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051406-proteinTCONS_00051406-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051406-exon-scaffold_201-1575043694:241130..241237TCONS_00051406-exon-scaffold_201-1575043694:241130..241237Clytia hemisphaericaexon
TCONS_00051406-exon-scaffold_201-1575043694:230986..232712TCONS_00051406-exon-scaffold_201-1575043694:230986..232712Clytia hemisphaericaexon
TCONS_00051406-exon-scaffold_201-1510915933:241130..241237TCONS_00051406-exon-scaffold_201-1510915933:241130..241237Clytia hemisphaericaexon
TCONS_00051406-exon-scaffold_201-1510915933:230986..232712TCONS_00051406-exon-scaffold_201-1510915933:230986..232712Clytia hemisphaericaexon
TCONS_00051406-exon-scaffold_201-1491911889:241130..241237TCONS_00051406-exon-scaffold_201-1491911889:241130..241237Clytia hemisphaericaexon
TCONS_00051406-exon-scaffold_201-1491911889:230986..232712TCONS_00051406-exon-scaffold_201-1491911889:230986..232712Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:230986..241237 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.7715	13.4471	7.63373	7.68594	60.9669	44.7357	44.2658	45.853	33.7576	31.1101	29.1573	24.8486	21.5491	18.4909	19.7366	23.2811	23.0623	23.6885	14.5891	19.1983	22.889	19.3552	33.8484	32.0695	46.3603	41.3964	27.6145	20.5945	31.1194	33.803
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00051406 vs. Swiss-Prot (Human)
Match: STK11 (Serine/threonine-protein kinase STK11 OS=Homo sapiens GN=STK11 PE=1 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 1.179e-123
Identity = 202/372 (54.30%), Postives = 257/372 (69.09%), Query Frame = 3 
Query:  240 DFVIRTIPSDEIICETVERKAKCISKYLMGDVLGEGAYGKVKEVLDIVTLHRRAVKIMKKRKLRKIPHGEENVKREIWMLKRTSHKNVIELVDVMQNKERGKIYMVMDYCVCNMHEMLKKSANHFFPEWQAHFYFTQLIEGLEYLHSMGIIHKDIKPSNLLINMDQTLKISDFGVAEQLNPFAPDDSCITSQGSPMFQPPEIANGVDVFSGYKLDIWACGVTLFNIITGQYPYEGDTIYRLFDNIGKKECVIPTTLDPALQKLLAGVLCRDFKKRFSIEEIRKHTWFRRNQHQVEKGVDFPSNDGHDSLLDESKELTTIPFLDRL---NKDEAVLIPNDSCVSTSDISAMDTPTR-PDNFNNHFLRRQSTPE 1343
            D  I  I S E+I +   ++AK I KYLMGD+LGEG+YGKVKEVLD  TL RRAVKI+KK+KLR+IP+GE NVK+EI +L+R  HKNVI+LVDV+ N+E+ K+YMVM+YCVC M EML       FP  QAH YF QLI+GLEYLHS GI+HKDIKP NLL+    TLKISD GVAE L+PFA DD+C TSQGSP FQPPEIANG+D FSG+K+DIW+ GVTL+NI TG YP+EGD IY+LF+NIGK    IP    P L  LL G+L  +  KRFSI +IR+H+WFR+     E  V  P +       D  + +T +P+L+ L   ++DE +    D  + T D +    P + P+   +H  +R+  P+
Sbjct:   23 DTFIHRIDSTEVIYQPRRKRAKLIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISDLGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPPAEAPVPIPPS---PDTKDRWRSMTVVPYLEDLHGADEDEDLFDIEDDIIYTQDFT---VPGQVPEEEASHNGQRRGLPK 388
The following BLAST results are available for this feature:
BLAST of TCONS_00051406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STK111.179e-12354.30Serine/threonine-protein kinase STK11 OS=Homo sapi... [more]
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