TCONS_00051398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051398
Unique NameTCONS_00051398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051398 ID=TCONS_00051398|Name=TCONS_00051398|organism=Clytia hemisphaerica|type=transcript|length=463bp
aaataaaaaaatcaaatacaaaataaaaaatcggaTAGCCAAAAAATCCC
GTAGCCAGTAGCGAAGCGAGCGGAAGGTTatcccaaattttcaaaatggc
ggaagCAGGAAAGGTGAAGTGTAAGCAGTGTCAGTCAATGGTGCCTGACA
AGCGCTTTTGTGGTTCTTGTGGACATGGATTGTTGAAGTATTGTATGGAT
TGTGGGAATAAAGGAAAGTGTGATGAATCCTGTGAAAGTGCTTCCAGTAG
CACAACTCTCAATCTCAAACAATTCCAAGCAGCCAAAACTAAACCACGCA
CAGAACTGATTtcaaaaaagaacaataacaAACAATCCAAACAATCTACT
TCAACAAAATCAATAAAGGAGACAACTGATAAAGTGACCATTAAAGTTGG
GCTAATGATCAGAGACAAAGGTGTCCTCAAAAAACAAAGAGGGAATTGGG
CCAATTTATCCGG
Run BLAST on NCBI

protein sequence of TCONS_00051398-protein

>TCONS_00051398-protein ID=TCONS_00051398-protein|Name=TCONS_00051398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MAEAGKVKCKQCQSMVPDKRFCGSCGHGLLKYCMDCGNKGKCDESCESAS
SSTTLNLKQFQAAKTKPRTELISKKNNNKQSKQSTSTKSIKETTDKVTIK
VGLMIRDKGVLKKQRGNWANLS
Run BLAST on NCBI

transcript from alignment at scaffold_201:31165..36136-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051398 ID=TCONS_00051398|Name=TCONS_00051398|organism=Clytia hemisphaerica|type=transcript|length=4972bp|location=Sequence derived from alignment at scaffold_201:31165..36136- (Clytia hemisphaerica)
AAATAAAAAAATCAAATACAAAATAAAAAATCGGATAGCCAAAAAATCCC
GTAGCCAGTAGCGAAGCGAGCGGAAGGTTATCCCAAATTTTCAAAATGGC
GGAAGCAGGAAAGGTGAAGTGTAAGCAGTGTCAGTCAATGGTGCCTGACA
AGCGCTTTTGTGGTTCTTGTGGACATGGATTNCTAATGCTTCAGATGCAT
CCGGACGCGTGGGGCATAGGGTTAGGGATTTGCACCAGGGTGGCGAAGCC
ACCCTGGTGCACATCCCTAACCCCTCACCCGGCCGGCACCCGGCGGTGCA
CACGTGTGGTGGCTTCTTCGGAGTAATGGCGATCATAACAGTTAGCCTAA
CTTGTCAGTCAGACTTATTTATATATAGTACTAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTATTCATCCAAAAAAAATCTTATAAAAGTC
GCTAAAGCATTTTTTTACCCAGGGTCGGCTTTTTATTGTATTTTGGTCGA
GGGTCGGCTTTTTTCCAAGGTCGAGGTCAGCCTTTTTCAAGGGTCAGGGT
CGAGGTCGAGGTCGGGTTAATGGAGATTGCCGGTTAGGGCATTGGTTTCG
AAACCTATAGGTTCCCGGTTCGAGACCCCCTTTGGTCACTATTCAACTTG
AAAAAAAATCTAAGTCCAGCTGGATGCATCTGAAGCTTTAGGCAAATGTG
AAAGAGATGAAGTGTAAGCAGTATCAGTCAATGGTGCCTGACAAGCACTT
TTGTGGTTCTTGTGGACATGGATTGTTGAAGTATTGTATGGATTGTGGGA
ATAAAGGACAGTGTGATGAATCCTGTGAAAGTGCTTCCAGTAGCACAACT
CTCAATCTCAAACAATTCCAAGCAGCCAAAACTAAACAACGCACAGAACT
GATTTCAAAAAAGAACAATAACAAACAATCTAAACAATCTACTTCAACAA
AATCAATAAAGGAGACAACTGATAAAGTGACCATTAAAGTTGGGCTAATG
ATCAGAGACAAAGGTGTCCTCAAAAAACAAAGAGGGAATTGGGCCAATTT
ATCCGCTCGGGTAAGTTATGGCATGTCTTAAAATTACCATAATTTTTAGA
TCGCATTAGCCGGCAGAAAACGACCAAACAAATGACTGAACATAAAGGGT
ACTATGATGTAGTTTCTAACCTGATGTTTTTCGCTGATTTTCGTGAAAAA
CCGTAAAAACTGATTATAACGTCATAATCGATGACGTCATAAAAACTAAA
AATTGAATTTCTCAAGGGTTTTTTATCCAATCGTCTTCAAACTTTAACCA
AAGATGTATCTGACTAAAGTCGATCATTTGAAAAAAAATTTTTTTCGAAA
TTCTGATTACGTCAGCAAAAAATAGGATTTTTCCTTTTTTCCTAATTTCT
GCTGACGTCATTAAAAATTTTGAAAAATTTCTTTTTCCAAATGATCGACT
TTAATGAGATACATCTTTGGTGAAAGTTTGAAGACAATTGGATAAAAAAA
ATAAAAATCCTTGAGAAATTCAATTTTTAGTTTTTATGACGTCATCGATT
ATGACGTTATAATCAGTTTTTACGGTTTTTCACGAAAATCAGCGAAAAAA
CAATTAGGTTACACATCAGGTTAGAAACTACATCATAGTACCCTTCATGT
TCAGTCATTTGTTTGGTCATTTTCTGTCGACTAATGCGATCTAAAAATTA
TGGTAATTTTCAGTTTTTTAGACATGCCATAACTTACCCGAGCGGTTTTA
TCCGTAAGTTATGGAAGCCGAGAAAGGTCATCTGGCGATTTCTTTCAAAA
TATGTCGAGATTTCTTTCAAACTGTCGAGAATTCTTTCAAACTGTCGAGA
ATTCTTTCAAACTGTCGAGAATTCTTTCAAACTATCGAGAATTCTTTCAA
ACTATCGAGATTTCTTTCAAACTGTCGAGAATTCTTTCAAACTGTCGAGA
TCTCCTTTGAACTGTCGAGCTTCCAATAAGTGTCCCGTTCCCAAAAGAAT
CGCGATTTCATTTTTTTCCAGAAAAAAATGTAGAGATTCCTTCATCAAAA
CCGCGGGAACATAAACTAAACGCAGGACATGGGTATCACCTCCACACGCG
AAAAAGAAAAATAGGGAGCACCAATCCAGTCGGAGTTAACTGTAAACTAC
TCCGAAGATAATGGCTTTATTATCGGACCTGACTGCTGATCAAAAATTTC
CAAATCATATCGTTTTTGGTTGGAAAGATATCTAAGTTTGTAGATTTAAA
AATATTTAACCTTTTCTTCTTTACAACTTGGGGTCCCTTTTTAAAAATAC
TGACGTCATCAAATTTAGAAGGACTGTCGAAAAATTTTGGAAAATGAAAT
TAAGTAAAAGTTTTCAAAGTAGTAGCATAAATTGGAAAACTTCCAGAAAA
AAAATGTTTTAGGGGTGATGCATCGTTAAAGAAAAGCTTGGCACGTGGAC
TTTTCACAAGTGGATAATAATAGGGTGATTCCCCCAGCGTAATGCTCGAC
GCTTTTTTGGAAGCTCGACAGTTTGAAAGAATTCTCGACAGTTTGAAAAA
AATCTGGACACTTTTTGGAAGCTCGACAGTTTGAAAGAAATCTCGACAGT
TTGAAAGAAATCTCGACAGTTTGAAAGAATTCTCGACAGTTTAAAAGAAT
TCTTGACAGTTTGAAAGAATTCTCGACAGTTTGAAAGAAATCTCGACAAC
TTGAAAGAAATCTCGACATATTTTGAAAGAATTCGCCAGATGACCTTTCT
CGGCTTCCATAGTAAGTCGTTCAGATTCAGCTGATATTGTTTTCAAACTA
GCTCTATTTCTAGTTCTATTAAGTGATCACATAATACGCTAACGTACATT
ATCATGATATTGAAAATAAAAAGTTATTAAAAATACCTAATAAAATGAAA
ACAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTCATCCAAAAAA
AATCTTATAAAAGTCGCTAAAGCATTTTTTTACCCAGGGTCGGCTTTTTA
TTGTATTTTGGTCGAGGGTCGGCTTTTTTCCAAGGTCGAGGTCAGCCTTT
TTCAAGGGTCAGGGTCGAGGTCGAGGTCGGGTTAATGGAGATTGCCGGTT
AGGGCATTGGTTTCGAAACCTATAGGTTCCCGGTTCGAGACCCCCTTTGG
TCACTATTCAACTTGAAAAAAATTCTAAGTCCAGCCGGATGCATCTGAAG
CTTTTAGCCAAATGTGAAAGAGATGAAGTGTAAGCAGTGTCAGTCAATGG
TGCCTGACAAGCGCTTTTGTGGTTCTTGTGGACATGGATTGTTGAAGTAT
TGTATGGATTGTGGGAATAAAGGAAAGTGTGATGAATCCTGTGAAAGTGC
TTCCAGTAGCACAACTCTCAATCTCAAACAATTCCAAGCAGCCAAAACTA
AACCACGCACAGAACTGATTTCAAAAAAGAACAATAACAAACAATCCAAA
CAATCTACTTCAACAAAATCAATAAAGGAGACAACTGATAAAGTGACCAT
TAAAGTTGGGCTAATGATCAGAGACAAAGGTGTCCTCAAAAAACAAAGAG
GGAATTGGGCCAATTTATCCGG

Coding sequence (CDS) from alignment at scaffold_201:31165..36136-

>TCONS_00051398 ID=TCONS_00051398|Name=TCONS_00051398|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_201:31165..36136- (Clytia hemisphaerica)
ATGGATTGTTGAAGTATTGTATGGATTGTGGGAATAAAGGAAAGTGTGAT
GAATCCTGTGAAAGTGCTTCCAGTAGCACAACTCTCAATCTCAAACAATT
CCAAGCAGCCAAAACTAAACCACGCACAGAACTGATTTCAAAAAAGAACA
ATAACAAACAATCCAAACAATCTACTTCAACAAAATCAATAAAGGAGACA
ACTGATAAAGTGACCATTAAAGTTGGGCTAATGATCAGAGACAAAGGTGT
CCTCAAAAAACAAAGAGGGAATTGGGCCAATTTATCCATGGCGGAAGCAG
GAAAGGTGAAGTGTAAGCAGTGTCAGTCAATGGTGCCTGACAAGCGCTTT
TGTGGTTCTTGTGGACATGGATTGTTGAAGTATTGTATGGATTGTGGGAA
TAAAGGAAAGTGTGATGAATCCTGTGAAAGTGCTTCCAGTAGCACAACTC
TCAATCTCAAACAATTCCAAGCAGCCAAAACTAAACCACGCACAGAACTG
ATTTCAAAAAAGAACAATAACAAACAATCCAAACAATCTACTTCAACAAA
ATCAATAAAGGAGACAACTGATAAAGTGACCATTAAAGTTGGGCTAATGA
TCAGAGACAAAGGTGTCCTCAAAAAACAAAGAGGGAATTGGGCCAATTTA
TCCATGGCGGAAGCAGGAAAGGTGAAGTGTAAGCAGTGTCAGTCAATGGT
GCCTGACAAGCGCTTTTGTGGTTCTTGTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032571XLOC_032571Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051398-proteinTCONS_00051398-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051398-exon-scaffold_201-1575043694:35963..36136TCONS_00051398-exon-scaffold_201-1575043694:35963..36136Clytia hemisphaericaexon
TCONS_00051398-exon-scaffold_201-1575043694:31165..31453TCONS_00051398-exon-scaffold_201-1575043694:31165..31453Clytia hemisphaericaexon
TCONS_00051398-exon-scaffold_201-1510915933:35963..36136TCONS_00051398-exon-scaffold_201-1510915933:35963..36136Clytia hemisphaericaexon
TCONS_00051398-exon-scaffold_201-1510915933:31165..31453TCONS_00051398-exon-scaffold_201-1510915933:31165..31453Clytia hemisphaericaexon
TCONS_00051398-exon-scaffold_201-1491911889:35963..36136TCONS_00051398-exon-scaffold_201-1491911889:35963..36136Clytia hemisphaericaexon
TCONS_00051398-exon-scaffold_201-1491911889:31165..31453TCONS_00051398-exon-scaffold_201-1491911889:31165..31453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:31165..36136 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.136206	0	0	37.0541	25.4075	20.5441	27.3215	9.89019	11.7176	6.91222	8.61124	8.60635	8.20732	0	0	0	0	0	0	0	0	0	0	16.529	27.8346	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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