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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051391 ID=TCONS_00051391|Name=TCONS_00051391|organism=Clytia hemisphaerica|type=transcript|length=984bp
CaccaattttgatcaaattctgaagaaaaaaaattcaagtaaACTTCCAT
CGATATGTTGGGAAAAAGGTGATGTGGAATATGATGGAGTCCCCTATATC
CAGCTTGGTTTATGTACCTTTCAGTGCCATCAAGGTGAAGATTTCAATAT
TGGTACAAAAAAGAAgcataaacaaaaacaagaacaaaaattgaaaagtg
atCATGCTGAATTTGTCAAGATGAAAAAACTTTCTCAACCGTCCAAGAAA
GTCGGATGTCCCGTTAAATTCAACGttaagaaacttttaaaatttgacgg
TTTCAGAATTTCAGACAATACCAGATATTTCCGAAGCAGTACCGCTTCCA
AACTGAAGGATGCTATATTAGAACGATTAGTAAAGGAGATACACAAATAA
CCCCAGATTTCGGAAGAGTCGTCTATGTAGTGTCATTTCCTGAAGGTGGC
CACAAGTTCCATCACTCTGGTGAGGCTGCTGGAATTATTGAACCTCTCGA
CCCTGAAGTATCTGAACATTTGAAAACCCTGATCAGAAATGGCAATAAAA
GACCAAGAGTTTTACAAGACCGTGCTCAAGAGTTTGTGAAAAAGCACTTT
TCAAATGAAGAAGACCTTAATCCGTTTAGGAGAAGATTTTTCCCTTCACg
taagatggttaaaaacatgATCACAAGGGTTAAAAACGATCTCCGACATT
CGAAAATCGACCAAGAGAACGTTGAAATGCTTAAAGAGATATTGCAAAAG
AACGCAGATATTGTTTTCACACCTAGGTAATACAATATAACATATATACC
CTAGAATATATACCCTAAATAATTTTAGTAAATATACAATATCTCAACTC
TAAAACTCTAAAAAGGTCGTTTTCATAACTCATCctaaattttgtcaatt
tgttTAATAACTACTTGATCTCTCAACcaaaagtacactattcttataaa
aaagcgtttattcTACAACTAAAAATGATTAGAC Run BLAST on NCBI protein sequence of TCONS_00051391-protein >TCONS_00051391-protein ID=TCONS_00051391-protein|Name=TCONS_00051391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
TNFDQILKKKNSSKLPSICWEKGDVEYDGVPYIQLGLCTFQCHQGEDFNI
GTKKKHKQKQEQKLKSDHAEFVKMKKLSQPSKKVGCPVKFNVKKLLKFDG
FRISDNTRYFRSSTASKLKDAILERLVKEIHK Run BLAST on NCBI transcript from alignment at scaffold_201:601600..603329+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051391 ID=TCONS_00051391|Name=TCONS_00051391|organism=Clytia hemisphaerica|type=transcript|length=1730bp|location=Sequence derived from alignment at scaffold_201:601600..603329+ (Clytia hemisphaerica)
CaccaattttgatcaaattctgaagaaaaaaaattcaagtaaACTTCCAT
CGATATGTTGGGAAAAAGGTGATGTGGAATATGATGGAGTCCCCTATATC
CAGCTTGGTTTATGTACCTTTCAGTGCCATCAAGGTGAAGATTTCAATAT
TGGTACAAAAAAGAAgcataaacaaaaacaagaacaaaaattgaaaagtg
atCATGCTGAATTTGTCAAGATGAAAAAACTTTCTCAACCGTCCAAGAAA
GTCGGATGTCCCGTTAAATTCAACGttaagaaacttttaaaatttgacgg
TTTCAGAATTTCAGACAATACCAGATATTTCCGAAGCAGTACCGCTTCCA
AACTGAAGGATGCTATATTAGAACGATTAGTAAAGGAGATACACAAATAA
CCCCAGATTTCGGAAGAGTCGTCTATGTAGTGTCATTTCCTGAAGGTATC
AATTTATAGCAATACTAgactcttttctttttcttttcacgACCTTTGat
caatgggctcttccagaaaaaatccgttcatgggggggggggggggggga
aaaaaaattttggggggggtaaattccaatgtccagggtaattgtttgtg
tccacggggttgatttgatgtttgtccaggggtattacccgtgtccaggg
ggtaaattccaatgtccagggtaattgtttgtgtccacggggttgatttg
atgtttgtccaggggtattacccgtgtccagggggttaaaaatcaaaatg
tccaggggtaattcatgaaaaaaataatattacctccacccccatgaacg
gattttttctggaagagcccattacacCTTTCCCAAGTTTATCGATTTTT
CGACCTCTCCAGTTTGAAACGAGTACTTGatacttttgaagattttgaca
aTACAAAgtcatttagaaaatttgagatcaaaagcTTTTTCCGTTCCTTT
TTTATGGCTGTTTTTACGGTCAAACCTCtcttaaaagatattttatccTA
CCGGGCCTCGTTTCTATTCCGTTTCCATGGGATacttttgtttaagaaaa
aatcttaatCTCAATCAATTAATCTTATCAGGCGTTTCTTTCATTATTTG
ACATAAAACACAGTACAGAACTATACAATGGTTAcagtccaaatattttc
actaagcatataataaaatatatataatatttcaatctTAGGTGGCCACA
AGTTCCATCACTCTGGTGAGGCTGCTGGAATTATTGAACCTCTCGACCCT
GAAGTATCTGAACATTTGAAAACCCTGATCAGAAATGGCAATAAAAGACC
AAGAGTTTTACAAGACCGTGCTCAAGAGTTTGTGAAAAAGCACTTTTCAA
ATGAAGAAGACCTTAATCCGTTTAGGAGAAGATTTTTCCCTTCACgtaag
atggttaaaaacatgATCACAAGGGTTAAAAACGATCTCCGACATTCGAA
AATCGACCAAGAGAACGTTGAAATGCTTAAAGAGATATTGCAAAAGAACG
CAGATATTGTTTTCACACCTAGGTAATACAATATAACATATATACCCTAG
AATATATACCCTAAATAATTTTAGTAAATATACAATATCTCAACTCTAAA
ACTCTAAAAAGGTCGTTTTCATAACTCATCctaaattttgtcaatttgtt
TAATAACTACTTGATCTCTCAACcaaaagtacactattcttataaaaaag
cgtttattcTACAACTAAAAATGATTAGAC Coding sequence (CDS) from alignment at scaffold_201:601600..603329+ >TCONS_00051391 ID=TCONS_00051391|Name=TCONS_00051391|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_201:601600..603329+ (Clytia hemisphaerica)
accaattttgatcaaattctgaagaaaaaaaattcaagtaaACTTCCATC
GATATGTTGGGAAAAAGGTGATGTGGAATATGATGGAGTCCCCTATATCC
AGCTTGGTTTATGTACCTTTCAGTGCCATCAAGGTGAAGATTTCAATATT
GGTACAAAAAAGAAgcataaacaaaaacaagaacaaaaattgaaaagtga
tCATGCTGAATTTGTCAAGATGAAAAAACTTTCTCAACCGTCCAAGAAAG
TCGGATGTCCCGTTAAATTCAACGttaagaaacttttaaaatttgacggT
TTCAGAATTTCAGACAATACCAGATATTTCCGAAGCAGTACCGCTTCCAA
ACTGAAGGATGCTATATTAGAACGATTAGTAAAGGAGATACACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051391-exon-scaffold_201-1491911889:601600..602044 | TCONS_00051391-exon-scaffold_201-1491911889:601600..602044 | Clytia hemisphaerica | exon |
| TCONS_00051391-exon-scaffold_201-1510915933:601600..602044 | TCONS_00051391-exon-scaffold_201-1510915933:601600..602044 | Clytia hemisphaerica | exon |
| TCONS_00051391-exon-scaffold_201-1575043694:601600..602044 | TCONS_00051391-exon-scaffold_201-1575043694:601600..602044 | Clytia hemisphaerica | exon |
| TCONS_00051391-exon-scaffold_201-1491911889:602791..603329 | TCONS_00051391-exon-scaffold_201-1491911889:602791..603329 | Clytia hemisphaerica | exon |
| TCONS_00051391-exon-scaffold_201-1510915933:602791..603329 | TCONS_00051391-exon-scaffold_201-1510915933:602791..603329 | Clytia hemisphaerica | exon |
| TCONS_00051391-exon-scaffold_201-1575043694:602791..603329 | TCONS_00051391-exon-scaffold_201-1575043694:602791..603329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:601600..603329 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029309 | CaRF |
Blast
The following BLAST results are available for this feature:
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