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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051385 ID=TCONS_00051385|Name=TCONS_00051385|organism=Clytia hemisphaerica|type=transcript|length=765bp
TTCGGACAGTGTAGTAAAGCCACTTTGAAGACAGAGGTTCTATGaactaa
aaaaacaacatcGATCACAATAACAACAAATGAAGACAAAAGAACGTTGA
TCGTTCGACACGTTCAAAACACATTCAAAACATGTCCACGTTGAGCACGA
AATGTATCTTCTTGAAAAAACCTTTAGAAACGATGATGATGGCGCAGACA
CACCGTTCATTGTTTGTGGACGCTACTCTCAAATGTCCTGTCATGTCCAG
CATGCTGGCGAAGAAAAATGATCACTCaaatttgaaagGTCAATGTCCAT
TCAGCCAAGATTCAGTCCTTCAAACGTTAACAAAGGGCGTCAATCGATTC
TTCCACACTTCACAACACGATAATGCATCTAAAAACAACCCTCCGCCCAT
AAACACTAAAGATACACCGCCCTCAGAAGAACAGCGTATTTTCAATGAAG
AAATTGGAAAGCCTGCAACAGGACAAGGGAATCATCTCAATATTTTAGAA
gATATTCACCATGTGCCGCACAAAACCGCCCAAACGCCTCCACATCAAAT
AACAACGGAACTGAATAAGCAACATTTTAAATACGAGCAACATTTCAATC
GAATGATCGAAGCGAAGAAAACCGATCATTCTTACCGCATTTTCCGTAAA
GTCAACCGGAATACGGAATCCTTCCCGATGGCGGACGACTACACCTTCTC
CGACCGCCCACACAAAGTGACTGTGTGGTGCAGTAACGATTATTTGGGTA
TGAGTGGTCACCCGG Run BLAST on NCBI protein sequence of TCONS_00051385-protein >TCONS_00051385-protein ID=TCONS_00051385-protein|Name=TCONS_00051385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MSTLSTKCIFLKKPLETMMMAQTHRSLFVDATLKCPVMSSMLAKKNDHSN
LKGQCPFSQDSVLQTLTKGVNRFFHTSQHDNASKNNPPPINTKDTPPSEE
QRIFNEEIGKPATGQGNHLNILEDIHHVPHKTAQTPPHQITTELNKQHFK
YEQHFNRMIEAKKTDHSYRIFRKVNRNTESFPMADDYTFSDRPHKVTVWC
SNDYLGMSGHP Run BLAST on NCBI transcript from alignment at scaffold_201:366945..370211+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051385 ID=TCONS_00051385|Name=TCONS_00051385|organism=Clytia hemisphaerica|type=transcript|length=3267bp|location=Sequence derived from alignment at scaffold_201:366945..370211+ (Clytia hemisphaerica)
TTCGGACAGTGTAGTAAAGCCACTTTGAAGACAGAGGTTCTATGGTTTGG
TTGTGGACTGTTCAGTCTAttgatatttttctggcgaCTCTGAAATTCAC
ATTTCTGGAAACTGGATTGTTCAGTATTAGGCCTTGTAACAAAAAAGAAT
GTTGGAAGTATCATCGTGAAAAACCTTATTGTAATTTTAAATGAAGTTTG
TACGGAGAGTCATTCATTAATCAACTTTTCTAATATCTTTTAGaactaaa
aaaacaacatcGATCACAATAACAACAAATGAAGACAAAAGAACGTTGAT
CGTTCGACACGTTCAAAACACATTCAAAACATGTCCACGTTGAGCACGAA
ATGTATCTTCTTGAAAAAACCTTTAGAAACGATGATGATGGCGCAGACAC
ACCGTTCATTGTTTGTGGACGCTACTCTCAAATGTCCTGTCATGTCCAGC
ATGCTGGCGAAGAAAAATGATCACTCaaatttgaaaggtattttgcttat
tttctaAACATGATTAGAACCACCGACTTTCTGTCTTCTCTCCGCTCCAT
CTTATTGGCTCTTTCTGGCTCTTTTAACACCGGTCCTAAGTTAACGCCAG
CCTCTCATACTGCCACTGTCCAATTTGCAGCTTAGGCCGCTAAAAGGGGC
CTTCAAAGTAAATGTTGATATGAATTGGCATGAATAGGGTCGAAACTGAG
CTACTTATGTAGGGCTTAAATCTACCCTTACAATATTGGAACCGGATTTG
TCTTTTAATGTGTATGTCAGATGGAAATGGTTATTTGGTGTGTGGCATTG
GGTCGATGGATGTGTACTAAGTGGCAGTTTTTACACTAGGCTTGGATAGT
GGTAGTATTCGAGCATTTGCTTTGAACTATTTCCATCGATGATCTTTACT
ATTGATTTTGTCATATATGttttttctttggattgatttgctagttttgg
gttcagttattaaactttttcttttgtaaaggtagtttttggccttcATT
AACAACTCTGTACTGCTTTCTTCACATTAAAAATGTCGTTCTTCGGTTCG
TAAACTGTTGAACGGTTTAAATTGAAAATCGATGTTTTCGTTTAATTTTC
TCCTGCGCCTCTCCTCTTGATTGGAGTAAAATAGCAAGGTGTGTTTGATT
ATGTTTCTTTCCTTAAATGTCGATAGAAAGCCGATGAATTTCATGCCATT
GCTGAGGTTGTTAAATAgatttaattgattaaaagttAATCTTTTTAATA
CCGATGTGATAATGAAATTCTGTACACGCTTGTTACTCAGCACTTTTTTA
ATTCTGCGCTGAGGTAATTACTGGAATTTAACTACGGATTATTGTTTAAT
GCATTCAActataaatttgaatataaatAAAACCATATATAAAACACCTG
AAAACACTCCTATAACAATCATATAACTCTAACTCCGGAGGCTTTCCCTA
CTTTTGACAACGCATTTCGTGCCAAACTTTGACATGATGCAATGACAAAC
TATATTTCATTTAGTATATCTTTTTATCAACATCATCCCATTATCTCTCA
TATATTCTCTCACTCGCAACTCTCCGTCTTTCACGTTTTGATAAGAATGT
GTGGAATGTCTTTCGATCTTCAACGCTGAACACCACATGGTGATAGAAAT
GTATTGAAAATATCACGTGGTTCTTTATTCAGACATTTCTCATCAGATTT
AGATATCTGGCCCAAAGTATTACAAATGCAAGGGTTTCAAATTAAACTAC
GCacgagaaaaaaatatcaagcatgtttttatttatccaaaaaatgtttt
tctatttttaaattcaataaaagtaataagattatACACTTGCCTCATAC
ATGTTTTTGGCTGATATAGTGACCCTTACAGTATgccaaaaatggaaaaa
aatgagctaaaattgcttgtcGCACGGCCACTTACtgttttgtttacttg
attttttttcgtgcaaatttcaTGAGATCAAAGTAAAAGCTACACAAATA
tctaattcgaaacccgtgtattattGGAAAGTACTAATTATTTCGTTTCT
CGTTACAAAACGTCCCTAAATTCAATCCTTTATTTGCAGGTCAATGTCCA
TTCAGCCAAGATTCAGTCCTTCAAACGTTAACAAAGGGCGTCAATCGATT
CTTCCACACTTCACAACACGATAATGCATCTAAAAACAACCCTCCGCCCA
TAAACACTAAAGATACACCGCCCTCAGAAGAACAGCGTATTTTCAATGAA
GAAATTGGAAAGCCTGCAACAGGACAAGGGAATCATCTCAATATTTTAGA
AggtttttatcttattttcttTATATTAGTAGGGGGCTAAGACTGGGGtg
ccgtgacatcttttttttACCTAACCGTTTTACCGTTTTCAATCTGtaag
ggaaaataaggggtagaaaaatagcttattttcaaaagtcaaaacatacg
aaaatgattggtaccatctgatagTGACAGAgcatgaaattaaaaaaaaa
ttgtattacaacaactcccTGACTTAAACagacaaagaaatacagccgct
ttaagaccaactaactgttTACTGTGATTTGTCACGGGACCCCAGGCTTG
GTCCCTACTATATGACTTGCGCATTCAAAATGCCAAGACTAGTAAGTATA
GTATAGACAGCCCCCTTTTTGACTGCCTATTCTAATTTTGGGCAGAAAGT
TGGCTGCCTAAAGTCAATACATTGCCTTCATCGATGTCAATGCAATGATT
TCTTTCAATATCTTTcgagcaaagattttaactctCAATTTTCTGCACAC
TTTTTGCTCAGAAAGTcgaccgtctaaactagagctattCCCTTTTGCTC
CAAAGGTTTGAAGTAGTAAAAAGTTAATATAGCTTAAACCACATCTCGAT
AAACGAACATCTTAATAGTaatataaattttttgatgattccCCACCTAA
GATATTTATAAGGATCCAATTTCTTTTTGGCATTGCAGTTCATTCTTTCT
CAGATATTCACCATGTGCCGCACAAAACCGCCCAAACGCCTCCACATCAA
ATAACAACGGAACTGAATAAGCAACATTTTAAATACGAGCAACATTTCAA
TCGAATGATCGAAGCGAAGAAAACCGATCATTCTTACCGCATTTTCCGTA
AAGTCAACCGGAATACGGAATCCTTCCCGATGGCGGACGACTACACCTTC
TCCGACCGCCCACACAAAGTGACTGTGTGGTGCAGTAACGATTATTTGGG
TATGAGTGGTCACCCGG Coding sequence (CDS) from alignment at scaffold_201:366945..370211+ >TCONS_00051385 ID=TCONS_00051385|Name=TCONS_00051385|organism=Clytia hemisphaerica|type=CDS|length=1899bp|location=Sequence derived from alignment at scaffold_201:366945..370211+ (Clytia hemisphaerica)
ATGTCCACGTTGAGCACGAAATGTATCTTCTTGAAAAAACCTTTAGAAAC
GATGATGATGGCGCAGACACACCGTTCATTGTTTGTGGACGCTACTCTCA
AATGTCCTGTCATGTCCAGCATGCTGGCGAAGAAAAATGATCACTCaaat
ttgaaagGTCAATGTCCATTCAGCCAAGATTCAGTCCTTCAAACGTTAAC
AAAGGGCGTCAATCGATTCTTCCACACTTCACAACACGATAATGCATCTA
AAAACAACCCTCCGCCCATAAACACTAAAGATACACCGCCCTCAGAAGAA
CAGCGTATTTTCAATGAAGAAATTGGAAAGCCTGCAACAGGACAAGGGAA
TCATCTCAATATTTTAGAAgATATTCACCATGTGCCGCACAAAACCGCCC
AAACGCCTCCACATCAAATAACAACGGAACTGAATAAGCAACATTTTAAA
TACGAGCAACATTTCAATCGAATGATCGAAGCGAAGAAAACCGATCATTC
TTACCGCATTTTCCGTAAAGTCAACCGGAATACGGAATCCTTCCCGATGG
CGGACGACTACACCTTCTCCGACCGCCCACACAAAGTGACTGTGTGGTGC
AGTAACGATTATTTGGGTATGAGTGGTCACCCGATGTCCACGTTGAGCAC
GAAATGTATCTTCTTGAAAAAACCTTTAGAAACGATGATGATGGCGCAGA
CACACCGTTCATTGTTTGTGGACGCTACTCTCAAATGTCCTGTCATGTCC
AGCATGCTGGCGAAGAAAAATGATCACTCaaatttgaaagGTCAATGTCC
ATTCAGCCAAGATTCAGTCCTTCAAACGTTAACAAAGGGCGTCAATCGAT
TCTTCCACACTTCACAACACGATAATGCATCTAAAAACAACCCTCCGCCC
ATAAACACTAAAGATACACCGCCCTCAGAAGAACAGCGTATTTTCAATGA
AGAAATTGGAAAGCCTGCAACAGGACAAGGGAATCATCTCAATATTTTAG
AAgATATTCACCATGTGCCGCACAAAACCGCCCAAACGCCTCCACATCAA
ATAACAACGGAACTGAATAAGCAACATTTTAAATACGAGCAACATTTCAA
TCGAATGATCGAAGCGAAGAAAACCGATCATTCTTACCGCATTTTCCGTA
AAGTCAACCGGAATACGGAATCCTTCCCGATGGCGGACGACTACACCTTC
TCCGACCGCCCACACAAAGTGACTGTGTGGTGCAGTAACGATTATTTGGG
TATGAGTGGTCACCCGATGTCCACGTTGAGCACGAAATGTATCTTCTTGA
AAAAACCTTTAGAAACGATGATGATGGCGCAGACACACCGTTCATTGTTT
GTGGACGCTACTCTCAAATGTCCTGTCATGTCCAGCATGCTGGCGAAGAA
AAATGATCACTCaaatttgaaagGTCAATGTCCATTCAGCCAAGATTCAG
TCCTTCAAACGTTAACAAAGGGCGTCAATCGATTCTTCCACACTTCACAA
CACGATAATGCATCTAAAAACAACCCTCCGCCCATAAACACTAAAGATAC
ACCGCCCTCAGAAGAACAGCGTATTTTCAATGAAGAAATTGGAAAGCCTG
CAACAGGACAAGGGAATCATCTCAATATTTTAGAAgATATTCACCATGTG
CCGCACAAAACCGCCCAAACGCCTCCACATCAAATAACAACGGAACTGAA
TAAGCAACATTTTAAATACGAGCAACATTTCAATCGAATGATCGAAGCGA
AGAAAACCGATCATTCTTACCGCATTTTCCGTAAAGTCAACCGGAATACG
GAATCCTTCCCGATGGCGGACGACTACACCTTCTCCGACCGCCCACACAA
AGTGACTGTGTGGTGCAGTAACGATTATTTGGGTATGAGTGGTCACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051385-exon-scaffold_201-1491911889:366945..366988 | TCONS_00051385-exon-scaffold_201-1491911889:366945..366988 | Clytia hemisphaerica | exon |
| TCONS_00051385-exon-scaffold_201-1510915933:366945..366988 | TCONS_00051385-exon-scaffold_201-1510915933:366945..366988 | Clytia hemisphaerica | exon |
| TCONS_00051385-exon-scaffold_201-1575043694:366945..366988 | TCONS_00051385-exon-scaffold_201-1575043694:366945..366988 | Clytia hemisphaerica | exon |
| TCONS_00051385-exon-scaffold_201-1491911889:367188..367431 | TCONS_00051385-exon-scaffold_201-1491911889:367188..367431 | Clytia hemisphaerica | exon |
| TCONS_00051385-exon-scaffold_201-1510915933:367188..367431 | TCONS_00051385-exon-scaffold_201-1510915933:367188..367431 | Clytia hemisphaerica | exon |
| TCONS_00051385-exon-scaffold_201-1575043694:367188..367431 | TCONS_00051385-exon-scaffold_201-1575043694:367188..367431 | Clytia hemisphaerica | exon |
| TCONS_00051385-exon-scaffold_201-1491911889:369034..369246 | TCONS_00051385-exon-scaffold_201-1491911889:369034..369246 | Clytia hemisphaerica | exon |
| TCONS_00051385-exon-scaffold_201-1510915933:369034..369246 | TCONS_00051385-exon-scaffold_201-1510915933:369034..369246 | Clytia hemisphaerica | exon |
| TCONS_00051385-exon-scaffold_201-1575043694:369034..369246 | TCONS_00051385-exon-scaffold_201-1575043694:369034..369246 | Clytia hemisphaerica | exon |
| TCONS_00051385-exon-scaffold_201-1491911889:369948..370211 | TCONS_00051385-exon-scaffold_201-1491911889:369948..370211 | Clytia hemisphaerica | exon |
| TCONS_00051385-exon-scaffold_201-1510915933:369948..370211 | TCONS_00051385-exon-scaffold_201-1510915933:369948..370211 | Clytia hemisphaerica | exon |
| TCONS_00051385-exon-scaffold_201-1575043694:369948..370211 | TCONS_00051385-exon-scaffold_201-1575043694:369948..370211 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:366945..370211 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015422 | PyrdxlP-dep_Trfase_sub2 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00051385 vs. Swiss-Prot (Human)
Match: HEM1 (5-aminolevulinate synthase, nonspecific, mitochondrial OS=Homo sapiens GN=ALAS1 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 6.910e-18 Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 3
Query: 576 FKYEQHFNRMIEAKKTDHSYRIFRKVNRNTESFPMADDYTFSDRPHK-VTVWCSNDYLGMSGHP 764
F+Y++ F + I+ KK DH+YR+F+ VNR FPMADDY+ S K V+VWCSNDYLGMS HP
Sbjct: 197 FQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHP 260
The following BLAST results are available for this feature:
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