TCONS_00051384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051384
Unique NameTCONS_00051384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1121

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051384 ID=TCONS_00051384|Name=TCONS_00051384|organism=Clytia hemisphaerica|type=transcript|length=1121bp
CATCATCATCGAATATTTACGCGTTGACGTGCTCAGCTGTGGAACTTTGC
CATATGGGAAATGAGGATATGTTTAATAAGTCTGAGAAGAGAGATTATTC
GTTTGCGAACGGCTCTGGTTCCCTTGGCATCATCTTGAACAGAGACGAGA
AACCACCAAGGTTGTATGGACAGAATGAATATGAAATCAAAACCTATGAT
GATATCTTAAGAGTATTTGCTGCAATCGCGTCACGAAACACGGAAGGCAC
GTTACTAAATGATACGTCATCACGCTCACACTGTTTGGTCGCGCTGAAGT
TGTGGCGATATGACGTCAGTACTAAAATGGTGTTCAAAACACGATTTCAA
TTTTGTGATTTGGCAGGATCTGAAAAACTTGACAAGGCACATTCAGACAC
CTCCATGAAGCTGCCCAACGGTGAATGGAACCATCTAGCAATCATGGGGA
TGTCTACAAACTTCAGTTACACAGAACTCCAACGTTGTCTCAATGATATT
GCAATACAAAAGAAACAGAACAGGAAATTCAACTTTCGGGCATACGTCAC
AGATCTCTTATTCTTGCTTTCTGGAAGCCTCGTCGGAAATGCGATCACAG
CGCTCTTCGTTTGTGTGTCTCAAGCAGAATCTAATAAAGCTGAATCGAAT
TACGCGTTAGATTTCGGTGAAAAGTTCTCTAAACTGGATATGAATTGCCA
GAAAGTAAAAGGACGTCTTTTAGAGGATCTCCAAAAAGAGTTATTGAAAT
CAATCGATGATAATTGTCGACAGATAGATAGTGCTTCGACTTGGAAAAAC
CGGTATACTATGATGAGAAAAGCTCAAGTTCGTGATTGTGAAcaaatatt
gaatgttttgaagAACTTTAGTGAAGAAAAAATGGGTAGTGTGAAATCAA
TGAACTGAAGCTCATGAATTGACCTACAACgtttgctgacgtgtggaatt
TCAATTTGGTAGGTAATAGAAATTGACAGTCAAAAAAATAATGACTTTAG
AAAATAGAACTTTTCATagattacgttacgaacatcattcgcctcgtttt
gaaattattgccatggtaattaactcccagcggattttattaaaacattt
cctattcataaaaaatcaatt
Run BLAST on NCBI

transcript from alignment at scaffold_201:334986..343922+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051384 ID=TCONS_00051384|Name=TCONS_00051384|organism=Clytia hemisphaerica|type=transcript|length=8937bp|location=Sequence derived from alignment at scaffold_201:334986..343922+ (Clytia hemisphaerica)
CATCATCATCGAATATTTACGCGTTGACGTGCTCAGCTGTGGAACTTTGC
CATATGGGAAATGAGGATATGTTTAATAAGGTTTTtaaatctacaatcag
tgacaaaatacttgacacaaaagggaaatccaacgggaagttttgaaacc
acaatcgatttgttagtgctctaaagtaggttcgaagggtagagttttaa
ctctgagttttaacgctagacttaagacctttgtgcactaactccaaaca
aaagaaaagtgtcaatattgcaattaaaattttttcccgctcaaaaaaga
TTCTTCGAAAAAATAAATGAGTGTGGATTTGNgaaaagtgtcaatattgc
aattaaaattttttcccgctcaaaaaagattcttcgaaaaaataaatgag
tgtggatttgtttgttaaaaattcttcatttgagttgattttgttttaag
agtttgttgttgcttgataaattgttttctcgctacgcaagtttctgctt
ACCTAGCCCCAGTATCTATAAGgccggaacaccggattcttccaggcgtt
tatacaaactaaaacCTGtgacaataatcgtattatcatataacgcctat
actactgatTTTAAACACATTATAAATGACTCCAGTCTATAAGGTTTGTA
TTTATTTGGATTTCATCGAATTTGCTTATTGGATGTTGAAAAGTTTAAAC
ATTCATTGTATAaactggtctggaagcttatgtttcaactttttgttagt
ttttttttcttttgttattgatcacgttaccaagtactcttcttgggatt
ggtttaatatttaatcacgtgatcaaaaagtgagcaaaacaagcaaattt
ttcaactcaagttcaagtaagaaacaatggaaagaaacaaaaggcttcca
gaccggggttttttatacggactatcgGGGTGGAAAAATGGTGGAAAAAT
CTCCGTAGACACTCTGACTATGTCGTTACGTTTGAACATGATCTGACTAT
CAGGATCTTTGGAAACATATTCCCTCTTCTTTTTGACAGTCTGAGAAGAG
AGATTATTCGTTTGCGAACGGCTCTGGTTCCCTTGGCATCATCTTGAACA
GAGACGAGAAACCACCAAGGTTGTATGGACAGAATGAATATGAAATCAAA
ACCTATGATGATATCTTAAGGTACCAATTCCATGTCTTCTTTGTTAATCA
GGGGTAGCAAAAACATCACTAAtctctaactacttgactggatcggtCTT
TCTATGTATAAgaagtgtgtccagttttaCAGCTGACTAATCTGCCATCT
TGATTTCAATTCTGCTCGTCAACAGttagattcgaatgttttgaaatttg
aacgtTTGAAAATCTCGGGTAAAATAGAAGACAAATTAGAGGACTAATCG
ACTTAAAAGCTGGACATAATTTCACAAAGAATCTGTAAGCACAGTTAGCC
TATCTAgtgtgtaaaagaatatgatatcTGTGAAAACGAGGCGAAACCAA
AGTTGGCGCAGGCgggagaaaatttcgattttgcctCAAAAATGAAGCTA
CAGTGATTATTTAataaaagaactttttatttgaaaaaaagtgaggCCTT
GTCAAGTATGTTATGTGTTAAAAATGATCAACTTTGTGCTTAAAGACGTA
TATGTGAAGGGGTGTATGCATGATGATAATAAGATTGGAAAAGTTTCGCA
TGAATGTAAACCACAAGCCATCAATTGAAGTGATAATGATTTGTTTGTCT
CTTAGAATGAAGATAATTCTCTTCTTTTGATTTCGTCACCAGAGTATTTG
CTGCAATCGCGTCACGAAACACGGAAGGCACGTTACTAAATGATACGTCA
TCACGCTCACACTGTTTGGTCGCGCTGAAGTTGTGGCGATATGACGTCAG
TACTAAAATGGTGTTCAAAACACGATTTCAATTTTGTGATTTGGCAGGAT
CTGAAAAACTTGACAAGGTATAAAAACTATTATTAACTTATTCGCAAACG
GATTTGTATTGTATGataaaaggaaatattttgatttttaggggcttggt
cacgagttttagcctcaaaacgaggctaaaaactttggaaaactttgata
ttttgcacacttgttccttggctATATATctggtttttggacctacctcc
gggtgccccggtggaggtcctatgaattaacctgtgtatgttcgttcgtt
cgttcgtccgtccgttcgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CCAGAGCATGCTCAGAACTGCTTGTTTGgtgtatattcttttatatattc
atggttcttgcagaaaatgtttttgagaaagccatagataaaagagcaaa
tactgtaaatggttttgaagaaaagtttgaagaaaaaataagacaattta
taatattaaatactttacacacttcagtttcatttcgtgaatatttaaaa
catagtaaaaaagttcgataatttattcttataaccatttttttatgaaa
tttctttgtagcgaattaattggctgacaatcaagcaaaaacttttcatg
ttgagtatgtttacattataaaaccaaaaatggattatattttgaaaaca
gtgatcaagttaaaaaataaaggagattatttatataatacatacaaggg
aatacaatatattcttaagatggaaaaataaaagattgccaaaaagtggA
GTACACCATGAGTGGATATAATGTGTTTTATGCGCAAATTCTAGCTCTCA
AATTAGATGAATAATCtgataaaaaagtactttttacattcaaagtaaaa
agtttgatgttttaAGCATTATTAAAAGTACTAACAGAAATCATCAACAA
TCTAtaggaaagcactttttcaactttcacaattgtatggagtattgttt
ataattcttttggtagagattgttgttatatatcatttcaaaaattctgc
attcaatcgtactcttttatgcttacttgtagggggtggaagatgcaGGG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNccccctcagatccgccgctgTAATAACCATAAT
TTCTGACGAGAAAGTTCagtatttttggtaaaaatactGATCGGTTCGTA
AAATACTAACCAGACAGGGTGACCAAACTGAAATGTTGGATTTGccggaa
aaatcttttcattttctcttattTAACTCCAATATTTTGCCTTTTATATT
AGGCACATTCAGACACCTCCATGAAGCTGCCCAACGGTGAATGGAACCAT
CTAGCAATCATGGGGATGTCTACAAACTTCAGTTACACAGAACTCCAACG
TTGTCTCAATGATATTGCAATACAAAAGAAACAGAACAGGAAATTCAACT
TTCGGGCATACGTCACAGATCTCTTATTCTTGCTTTCTGGAAGCCTCGTC
GGAAATGCGATCACAGCGCTCTTCGTTTGTGTGTCTCAAGCAGAATCTAA
TAAAGCTGAATCGAATTACGCGTTAGATTTCGGTGAAAAGTTCTCTAAAC
TGGATATGAATTGCCAGAAAGTAAAAGGACGTCTTTTAGAGGATCTCCAA
AAAGAGTTATTGAAATCAATCGATGATAATTGTCGACAGATAGATAGTGC
TTCGACTTGGAAAAACCGGTATACTATGATGAGAAAAGCTCAAGTTCGTG
ATTGTGAAcaaatattgaatgttttgaagAACTTTAGTGAAGAAAAAATG
GGTAGTGTGAAATCAATGAACTGAAGCTCATGAATTGACCTACAACgttt
gctgacgtgtggaattTCAATTTGGTAGGTAATAGAAATTGACAGTCAAA
AAAATAATGACTTTAGAAAATAGAACTTTTCATagattacgttacgaaca
tcattcgcctcgttttgaaattattgccatggtaattaactcccagcgga
ttttattaaaacatttcctattcataaaaaatcaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032560XLOC_032560Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051384-exon-scaffold_201-1491911889:334986..335065TCONS_00051384-exon-scaffold_201-1491911889:334986..335065Clytia hemisphaericaexon
TCONS_00051384-exon-scaffold_201-1510915933:334986..335065TCONS_00051384-exon-scaffold_201-1510915933:334986..335065Clytia hemisphaericaexon
TCONS_00051384-exon-scaffold_201-1575043694:334986..335065TCONS_00051384-exon-scaffold_201-1575043694:334986..335065Clytia hemisphaericaexon
TCONS_00051384-exon-scaffold_201-1491911889:336025..336155TCONS_00051384-exon-scaffold_201-1491911889:336025..336155Clytia hemisphaericaexon
TCONS_00051384-exon-scaffold_201-1510915933:336025..336155TCONS_00051384-exon-scaffold_201-1510915933:336025..336155Clytia hemisphaericaexon
TCONS_00051384-exon-scaffold_201-1575043694:336025..336155TCONS_00051384-exon-scaffold_201-1575043694:336025..336155Clytia hemisphaericaexon
TCONS_00051384-exon-scaffold_201-1491911889:336778..336952TCONS_00051384-exon-scaffold_201-1491911889:336778..336952Clytia hemisphaericaexon
TCONS_00051384-exon-scaffold_201-1510915933:336778..336952TCONS_00051384-exon-scaffold_201-1510915933:336778..336952Clytia hemisphaericaexon
TCONS_00051384-exon-scaffold_201-1575043694:336778..336952TCONS_00051384-exon-scaffold_201-1575043694:336778..336952Clytia hemisphaericaexon
TCONS_00051384-exon-scaffold_201-1491911889:343188..343922TCONS_00051384-exon-scaffold_201-1491911889:343188..343922Clytia hemisphaericaexon
TCONS_00051384-exon-scaffold_201-1510915933:343188..343922TCONS_00051384-exon-scaffold_201-1510915933:343188..343922Clytia hemisphaericaexon
TCONS_00051384-exon-scaffold_201-1575043694:343188..343922TCONS_00051384-exon-scaffold_201-1575043694:343188..343922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:334986..343922 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.524427	0.448912	0	0	4.59514	3.66192	4.23677	2.28087	2.62642	3.11489	1.16891	0.988956	1.91359	1.01793	2.05523	1.70535	0	0.000625407	2.35853	1.61922	0.849079	1.09415	1.32327	0.490251	4.9902	3.25903	0.950876	0.118588	0.100453	0.886925
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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