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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051381 ID=TCONS_00051381|Name=TCONS_00051381|organism=Clytia hemisphaerica|type=transcript|length=506bp
agaTCAAAAATGGTTTTGGTGATATGAATTATGAGGTCGTGCAAACCTTA
TTTGGTGCAACAAACAAGAAGGAGCTGGAAGAACAAATAATCCAGAAAAC
AATAGATTCTAgtATTTTTGAGCTTGTTGGTGTATTTTTAGCCTTCGGAA
TATCTGTTTCCATTAGTACAGAAGCCGGTCTCTTTGTGTTCGGAGATACG
GAGGGAAAGATTCATCTCTTGTTTAATGACCAAACAACAGAATACTGTTG
TTTGTTGAAAGGCGTATCATTTGATAAAGCCTGCCGCCAACACAACCACT
ATTGTAATGCGGTATTGACGGCAACACAAACATTCCAGTGCCAAAGTAGT
TTGCTGGAGTACCACATATTCTGTGCCGCGGACGATCGTGATTGTGGGTG
TTCATCAGAATCTCAAGTAATACAAATGATCAAAGAACATATTCTTCAGG
GTGATGATAAACATATAGAATCAATGCTGCTCTTCAAACGAGATAGGCAA
TTAGAG Run BLAST on NCBI protein sequence of TCONS_00051381-protein >TCONS_00051381-protein ID=TCONS_00051381-protein|Name=TCONS_00051381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
IKNGFGDMNYEVVQTLFGATNKKELEEQIIQKTIDSSIFELVGVFLAFGI
SVSISTEAGLFVFGDTEGKIHLLFNDQTTEYCCLLKGVSFDKACRQHNHY
CNAVLTATQTFQCQSSLLEYHIFCAADDRDCGCSSESQVIQMIKEHILQG
DDKHIESMLLFKRDRQLE Run BLAST on NCBI transcript from alignment at scaffold_201:311772..315084+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051381 ID=TCONS_00051381|Name=TCONS_00051381|organism=Clytia hemisphaerica|type=transcript|length=3313bp|location=Sequence derived from alignment at scaffold_201:311772..315084+ (Clytia hemisphaerica)
agaTCAAAAATGGTTTTGGTGATATGAATTATGAGGTCGTGCAAACCTTA
TTTGGTGCAACAAACAAGAAGGAGCTGGAAGAACAAATAATCCAGAAAAC
AATAGATTCTAGTAAGAAATTTTCATCGTTCAACAAAAATCCATGTAAAC
TCGAAACTCGACTCTCctagaaagaaaataaacttttcaaaTGTTCTCAG
CATGTATTTATATGCTATATCAAAAATactatacaccgttggaaaggtaT
TTTCAAGGAGAATAATCAAATAGATTaaagacttttgaaaatttggaaaa
tgaagatgaaaaagaaaatgtagTTTTTCTTCTGCTTCAAAAATAGTGAC
ACCAGACGTTTTGGAATATTTGAACCTTGCTGTTGTGTTCTCTTTCAGAT
AAAGAGTTGCATTACGTTGTGAATTAGGTCATTTTTAGCCGTTTTAGGTC
TACTTCAAAAAATGACTAACTTTTTATGCAACAAAGATAGGAAAAGCAAG
GTTCAAATATTTCAAGAGTCtgatgaaatgatttttttaattttgatttc
actgcatttgattgttttttacctgAGGACAAAAGGGTTTCTATcccatt
gagatttcgatagaaattttcatcctcaCTGCAAGAAGAAGTTCTACCGG
GGCtatgagacagggatgtctaTTGTGTTATGAGATATTTTGACTGCTTT
TGAAGACTACAGAATTTTCATGGATGGACTTTTCTTGTTGAACCCGGTAA
ATAACGACTAGTGAGTGTAGATACGATGATAGATAAACAACTGTACAAGT
TTGTTACAGACTTCATGTAGACGACAATTAATAagacatttttttacata
tttttctgTTCATGCAAGCCACCAAAACAACAAACGTCTAAACTTTGGTA
AAACTTGCAAGAACCTCATAACTGATTAAACTGACCAACTGACACCTTTG
TAAACGTAATTACAAATAATGACAAATATTTTGCTCATAGTATAGAACGA
CCAATATTGACATATAACGATGACAGATAAACAACTGCTCAGGTTTGTTA
CAGACTTCATGTAGACGACAATTAATGCGACATCTTTTATTTCTCTATGA
TTTAACATCACTTAGTTATGGCTTAAATTGAACTTCCGACATATTTGCTA
AAATATATGATAAAATATAGAGTATGGTGAATTATAAACCTAGAAAatgc
aaaagaaaaaattcttttttcaggtATTTTTGAGCTTGTTGGTGTATTTT
TAGCCTTCGGAATATCTGTTTCCATTAGTACAGAAGCCGGTCTCTTTGTG
TTCGGAGATACGGAGGGAAAGATTCATCTCTTGTTTAATGACCAAACAAC
AGAATACTGTTGTTTGTTGAAAGGCGTATCATTTGATAAAGCCTGCCGCC
AACACAACCACTATTGTAATGCGGTATTGACGGCAACACAAACATTCCAG
TGCCAAAGTAGTTTGCTGGAGTACCACATATTCTGTGCCGCGGACGATCG
TGATTGTGGGTGTTCATCAGAATCTCAAGTAATACAAATGTAAGTGATTG
ATAGACCTTTTCATAAATTACGTCACGAACATCACTTACCTCGTATCCAA
ATAATTTCCATGGTGATCATATCCCTTGAGACATTAAATGGTTTTTTATG
AATAGAAAGTAGTTGTAATAAAATCCGCTGGGAGTTAATAGCTATGGCAA
TAATTTCAAAACGAGGCATATGATGTTCGTGACGTAATTTATGAAAAGGT
CTATTTTATCCTTTTATATAGGTAGAACAAAAACATTTAACACTCGTGAT
AGTTGGACCAAACTATTTGGTATAGTAGAGTCCTCTCTTTTCTTTATGTG
GTCAGAATCTTAGCATGCTATAATTATCTGTGTTGGGAGAAAAAAGTTTT
TAAGAAATTTTCTTACCTGTCGATGTCACTGGTTCTATCCATGATTTTGA
ATTAAAATTAAATTTTTTTAAATTGTACCTGGTCCTCGGGGGTGGTTGGC
CACAAAGTGACCCATTACATTTCTATGAACCAATGAAAAATGAGTTGAAA
TAAAGAAAGAACTGCTTCGGGAGATTGACCTTTACTAGCAACAACAATCT
CTTGCCAATTACATTTCAGGATCAAAGAACATATTCTTCAGGGTGATGAT
AAACATATAGAATCAATGCTGCTCTTCAAACGAGATAGGCAATTAGAGGT
AACTTCATTCAGTGATAATTTTTTGATTCATGCAAACCTTTCTTAACAAA
ACAGTCTTAAGAAAAAAGACAACGTATAATTGATCTAATAACATCATGCG
AACGATCGAAAATAATATTTGGTTTGGTCGAAATATTTTTAGTGCAATAT
GGTTAATTTAATTTCTCCTTTTCAAATATATTATTGACATAACTATATTG
TAGAAAAGAATGCTCCACGTTCAAACAGCTTATGAATTTCAAGAATTATG
ACTAAAATTTGTACCTAAACTCATACTTAGTTTCGAACAACTTAGATTAT
AACTATCTTTTGGACGATGGTGGATAAGGAATTTGTATATGATTCGTTCT
TGAAGTCTAATATGTTTACTTCTACTATATTGTCACGAAACTTGTCAACG
ATCGGGATGCAgaagaaaatagattttttatgaaaactatGTCATCTTCA
AAAGTAAGTTCTGTTGTCTAGNaccttttcataaattacgtcacgaacat
cacttacctcgtATCCAAATaatttccatggtgatcatatcccttgagac
attaaatggtttttatgaatagaaagtagttgtaataaaatccgctggga
gttaatagccatagcaataatttcaaaacgaggcaagtgatgttcgtgac
gtaatttatgaaaaggtctattttatcCTTTTATCTAGGTAGAACAAAAA
CATTTAACACTCGTGATAGGTGGGCCAAACTACTTGGTATAGTAGAGTCC
TCTCTTTTCTTTATGTGGTCAGAATCTTAGCATGCTAATTATCTGTGTTG
ggagaaaaaagtttttaagaaattttcttACCTGTCGATGTCACTGGTTC
TATCTatgattttgaattaaaattaaatttttttaaattgtaccTGGTCC
TCGGGGGTGGTTAGCCACAAAGTGACCCATTACATTTCTATGAACCAATG
AAAAATGAGTTGAAATAAAGAAAGAACTGCTTCGGGAGATTGACCTTTAC
TAGCAACAACAATCTCTTGCCAATTACATTTCAGGATCAAAGAACATATT
CTTCAGGGTGATGATAAACATATAGAATCAATGCTGCTCTTCAAACGAGA
TAGGCAATTAGAG Coding sequence (CDS) from alignment at scaffold_201:311772..315084+ >TCONS_00051381 ID=TCONS_00051381|Name=TCONS_00051381|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_201:311772..315084+ (Clytia hemisphaerica)
aTCAAAAATGGTTTTGGTGATATGAATTATGAGGTCGTGCAAACCTTATT
TGGTGCAACAAACAAGAAGGAGCTGGAAGAACAAATAATCCAGAAAACAA
TAGATTCTAgtATTTTTGAGCTTGTTGGTGTATTTTTAGCCTTCGGAATA
TCTGTTTCCATTAGTACAGAAGCCGGTCTCTTTGTGTTCGGAGATACGGA
GGGAAAGATTCATCTCTTGTTTAATGACCAAACAACAGAATACTGTTGTT
TGTTGAAAGGCGTATCATTTGATAAAGCCTGCCGCCAACACAACCACTAT
TGTAATGCGGTATTGACGGCAACACAAACATTCCAGTGCCAAAGTAGTTT
GCTGGAGTACCACATATTCTGTGCCGCGGACGATCGTGATTGTGGGTGTT
CATCAGAATCTCAAGTAATACAAATGATCAAAGAACATATTCTTCAGGGT
GATGATAAACATATAGAATCAATGCTGCTCTTCAAACGAGATAGGCAATT
AGAGaTCAAAAATGGTTTTGGTGATATGAATTATGAGGTCGTGCAAACCT
TATTTGGTGCAACAAACAAGAAGGAGCTGGAAGAACAAATAATCCAGAAA
ACAATAGATTCTAgtATTTTTGAGCTTGTTGGTGTATTTTTAGCCTTCGG
AATATCTGTTTCCATTAGTACAGAAGCCGGTCTCTTTGTGTTCGGAGATA
CGGAGGGAAAGATTCATCTCTTGTTTAATGACCAAACAACAGAATACTGT
TGTTTGTTGAAAGGCGTATCATTTGATAAAGCCTGCCGCCAACACAACCA
CTATTGTAATGCGGTATTGACGGCAACACAAACATTCCAGTGCCAAAGTA
GTTTGCTGGAGTACCACATATTCTGTGCCGCGGACGATCGTGATTGTGGG
TGTTCATCAGAATCTCAAGTAATACAAATGATCAAAGAACATATTCTTCA
GGGTGATGATAAACATATAGAATCAATGCTGCTCTTCAAACGAGATAGGC
AATTAGAGaTCAAAAATGGTTTTGGTGATATGAATTATGAGGTCGTGCAA
ACCTTATTTGGTGCAACAAACAAGAAGGAGCTGGAAGAACAAATAATCCA
GAAAACAATAGATTCTAgtATTTTTGAGCTTGTTGGTGTATTTTTAGCCT
TCGGAATATCTGTTTCCATTAGTACAGAAGCCGGTCTCTTTGTGTTCGGA
GATACGGAGGGAAAGATTCATCTCTTGTTTAATGACCAAACAACAGAATA
CTGTTGTTTGTTGAAAGGCGTATCATTTGATAAAGCCTGCCGCCAACACA
ACCACTATTGTAATGCGGTATTGACGGCAACACAAACATTCCAGTGCCAA
AGTAGTTTGCTGGAGTACCACATATTCTGTGCCGCGGACGATCGTGATTG
TGGGTGTTCATCAGAATCTCAAGTAATACAAATGATCAAAGAACATATTC
TTCAGGGTGATGATAAACATATAGAATCAATGCTGCTCTTCAAACGAGAT
AGGCAATTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051381-exon-scaffold_201-1491911889:311772..311882 | TCONS_00051381-exon-scaffold_201-1491911889:311772..311882 | Clytia hemisphaerica | exon |
| TCONS_00051381-exon-scaffold_201-1510915933:311772..311882 | TCONS_00051381-exon-scaffold_201-1510915933:311772..311882 | Clytia hemisphaerica | exon |
| TCONS_00051381-exon-scaffold_201-1575043694:311772..311882 | TCONS_00051381-exon-scaffold_201-1575043694:311772..311882 | Clytia hemisphaerica | exon |
| TCONS_00051381-exon-scaffold_201-1491911889:312995..313310 | TCONS_00051381-exon-scaffold_201-1491911889:312995..313310 | Clytia hemisphaerica | exon |
| TCONS_00051381-exon-scaffold_201-1510915933:312995..313310 | TCONS_00051381-exon-scaffold_201-1510915933:312995..313310 | Clytia hemisphaerica | exon |
| TCONS_00051381-exon-scaffold_201-1575043694:312995..313310 | TCONS_00051381-exon-scaffold_201-1575043694:312995..313310 | Clytia hemisphaerica | exon |
| TCONS_00051381-exon-scaffold_201-1491911889:315006..315084 | TCONS_00051381-exon-scaffold_201-1491911889:315006..315084 | Clytia hemisphaerica | exon |
| TCONS_00051381-exon-scaffold_201-1510915933:315006..315084 | TCONS_00051381-exon-scaffold_201-1510915933:315006..315084 | Clytia hemisphaerica | exon |
| TCONS_00051381-exon-scaffold_201-1575043694:315006..315084 | TCONS_00051381-exon-scaffold_201-1575043694:315006..315084 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:311772..315084 + |
Blast
The following BLAST results are available for this feature:
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