TCONS_00051358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051358
Unique NameTCONS_00051358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length769

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051358 ID=TCONS_00051358|Name=TCONS_00051358|organism=Clytia hemisphaerica|type=transcript|length=769bp
NNTCCTCAGAATCATGGAATGTCATCAACAAAATTCTTCACCCTCGCTTG
AAACGTATGAGTATCGATCCAGACGAAATCAACAAATTCTTCAATTCAAC
TGCTGTTCGTACAACGGGGAAGAATGCTGGAGAGCTCTCAAAATCCTTTA
TTCGCGAGTTACCTGATCATCCATATAACTTCCATCTTCGCCATGCGACT
CATGACGAAGTACTTAAAGCCATCCAAAAACTGAGATCGGACTGCTCAAC
CGGCCCAGACAATATNCCAGACGAAATCAACAAATTCTTCAATTCAACTG
CTGTTCGCACGACGGGGAAGAATGCTGGAGAGCTCTCAAAATCCTTTATT
CGCGAGTTACCTGATCATCCAGATAACTTCCATCTTCGCCATGCGACTCA
TGACGAAGTACTTAAAGCCATCCAAAAACTGAGATCAGACTGCTCAACCA
GACAATATCCCATCAAAGTTCGTCAAACCAGTGTCAGAATACCTCGCATC
ACCCCTGACTCACATCATCAACAGCTGTATAACAACGTCAACTTTTCCAG
ACGACTGGAAAATTAGCCGAATCTGTCCTGTACCCAAAATCAACGATCCC
CAATCACTAGTCGACTACAGACCCATCAGCATCCTACCGATCCTATCCAA
GGTATTCGAAAGAGTTATTCTTCAACAACTTACAGACCACATTGAAACGA
AATCTATTTACCTCGACAGTCAACCCGGTTTCCGAAAATCTCATTCAACC
ACAACTGTTCTACTTAAAC
Run BLAST on NCBI

protein sequence of TCONS_00051358-protein

>TCONS_00051358-protein ID=TCONS_00051358-protein|Name=TCONS_00051358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
SSESWNVINKILHPRLKRMSIDPDEINKFFNSTAVRTTGKNAGELSKSFI
RELPDHPYNFHLRHATHDEVLKAIQKLRSDCSTGPDNXPDEINKFFNSTA
VRTTGKNAGELSKSFIRELPDHPDNFHLRHATHDEVLKAIQKLRSDCSTR
QYPIKVRQTSVRIPRITPDSHHQQLYNNVNFSRRLEN
Run BLAST on NCBI

transcript from alignment at scaffold_200:239838..240606

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051358 ID=TCONS_00051358|Name=TCONS_00051358|organism=Clytia hemisphaerica|type=transcript|length=769bp|location=Sequence derived from alignment at scaffold_200:239838..240606 (Clytia hemisphaerica)
GTTTAAGTAGAACAGTTGTGGTTGAATGAGATTTTCGGAAACCGGGTTGA
CTGTCGAGGTAAATAGATTTCGTTTCAATGTGGTCTGTAAGTTGTTGAAG
AATAACTCTTTCGAATACCTTGGATAGGATCGGTAGGATGCTGATGGGTC
TGTAGTCGACTAGTGATTGGGGATCGTTGATTTTGGGTACAGGACAGATT
CGGCTAATTTTCCAGTCGTCTGGAAAAGTTGACGTTGTTATACAGCTGTT
GATGATGTGAGTCAGGGGTGATGCGAGGTATTCTGACACTGGTTTGACGA
ACTTTGATGGGATATTGTCTGGTTGAGCAGTCTGATCTCAGTTTTTGGAT
GGCTTTAAGTACTTCGTCATGAGTCGCATGGCGAAGATGGAAGTTATCTG
GATGATCAGGTAACTCGCGAATAAAGGATTTTGAGAGCTCTCCAGCATTC
TTCCCCGTCGTGCGAACAGCAGTTGAATTGAAGAATTTGTTGATTTCGTC
TGGNATATTGTCTGGGCCGGTTGAGCAGTCCGATCTCAGTTTTTGGATGG
CTTTAAGTACTTCGTCATGAGTCGCATGGCGAAGATGGAAGTTATATGGA
TGATCAGGTAACTCGCGAATAAAGGATTTTGAGAGCTCTCCAGCATTCTT
CCCCGTTGTACGAACAGCAGTTGAATTGAAGAATTTGTTGATTTCGTCTG
GATCGATACTCATACGTTTCAAGCGAGGGTGAAGAATTTTGTTGATGACA
TTCCATGATTCTGAGGANN

Coding sequence (CDS) from alignment at scaffold_200:239838..240606

>TCONS_00051358 ID=TCONS_00051358|Name=TCONS_00051358|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_200:239838..240606 (Clytia hemisphaerica)
CTAATTTTCCAGTCGTCTGGAAAAGTTGACGTTGTTATACAGCTGTTGAT
GATGTGAGTCAGGGGTGATGCGAGGTATTCTGACACTGGTTTGACGAACT
TTGATGGGATATTGTCTGGTTGAGCAGTCTGATCTCAGTTTTTGGATGGC
TTTAAGTACTTCGTCATGAGTCGCATGGCGAAGATGGAAGTTATCTGGAT
GATCAGGTAACTCGCGAATAAAGGATTTTGAGAGCTCTCCAGCATTCTTC
CCCGTCGTGCGAACAGCAGTTGAATTGAAGAATTTGTTGATTTCGTCTGG
NATATTGTCTGGGCCGGTTGAGCAGTCCGATCTCAGTTTTTGGATGGCTT
TAAGTACTTCGTCATGAGTCGCATGGCGAAGATGGAAGTTATATGGATGA
TCAGGTAACTCGCGAATAAAGGATTTTGAGAGCTCTCCAGCATTCTTCCC
CGTTGTACGAACAGCAGTTGAATTGAAGAATTTGTTGATTTCGTCTGGAT
CGATACTCATACGTTTCAAGCGAGGGTGAAGAATTTTGTTGATGACATTC
CATGATTCTGAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032543XLOC_032543Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051358-proteinTCONS_00051358-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051358-exon-scaffold_200-1491911889:239838..240606TCONS_00051358-exon-scaffold_200-1491911889:239838..240606Clytia hemisphaericaexon
TCONS_00051358-exon-scaffold_200-1510915933:239838..240606TCONS_00051358-exon-scaffold_200-1510915933:239838..240606Clytia hemisphaericaexon
TCONS_00051358-exon-scaffold_200-1575043694:239838..240606TCONS_00051358-exon-scaffold_200-1575043694:239838..240606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:239838..240606 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.82359	0.80313	1.86502	1.33339	1.19609	0.675121	1.54756	1.67756	0.74741	1.12417	3.08089	1.60333	1.55896	1.53149	0.395714	0.34745	0.332913	0.974928	0.673458	0.775197	0.122507	0.0896318	0.145279	0	2.1086	1.51764	0.173739	0	0.140634	0.214926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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