|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051356 ID=TCONS_00051356|Name=TCONS_00051356|organism=Clytia hemisphaerica|type=transcript|length=1212bp
gtttgatagTAAAGAGATTGGCCTATAATTACTTACCTCGGTCCTAGCGT
TCTTTTTGTGGAGAGGCTTAATATTTGCTTTTTTTAGACAGTCAGGATAC
TCACCTTTGTCAAGACATTCATTGAATATGTAAGATATAATTTCACTAGC
AGTAATTGATGTCATCTTTAGAATTTTAGGATCGATACTGTTAGGGCCAG
ACGCCTTTTTCaagtcaattttttcaataagtTTATATACAGCCATTGGA
GTTGTTGGAGTAAGATGAATGGAAGCATTAGTAGGATTGCCCataaaatc
agtgaaaatcttGTTGGTTGGAGGTATTTTAGCCTTGGTTTTTTCGGCTA
TCGAcccataaaaatcattaaaaagttctGCTATATCCTCTTCTTTAGTT
ATATGAGCATTGTTGTGAATCAAAAGCTTAGGAGAGGAGCTATCTTTAGT
TTTGGTGTTAGTGATTTCGTTTATAGTTTTCCAAATGAGTGATAAGTTTG
TCTTGTGACGGAAAAAGTATTCTTTGATGTATTTGTTTTTGCTAATTCTG
AGAAGTTTTATTATGAAATTCCTGTGTCTTTTGTATCtagcaaattttgg
aattttttcagGAGAATCGTCTTTGAGTTTTAAATATTCACCGTGATACT
TGTCTCTGTTGAGCATAGCTTGACGCAAGCCGAAAGTGACCCATGGTTTG
GGTGAGATAAAATCattgataaactttgttttgattggagcATGTTGATC
AACAAGGTTGTTGGTAAGGTTGATAAAAGTTTCAAGTTTTTGGTTtgaag
ttttgttttcaaaatggtCAGGCCAAGAAATAGAGATAAAGTCGAGTAAA
AAATCTTCCCGATCAAATTTGCTAAAGTCCCTCcatgatttctttgtttt
ggtaCGTTTGTTAGCTGAAATATCAAGATTAAGAATTTGGGGGAGATGGT
CAGAAATTCCGCAAATAAGATTATGAGAATTTGATTCAAAAGACAGTATG
TTTGTGAAAATGTTGTCAATGAGAGTTTTGGAGTAAGGCGTTATTCTAGT
TGGTCTGGTGATTTGAGGAGTGAAAAATCGAGAAAGATTTGTTTCAAGAA
AATCCTTGTGACTAGGTTTAAGATCAGCTTTCAAAAGATCAATGTTAAAA
TCACCCATTAATATTGCCTGTTTGTTTTCACTGTTGATTTTATCAAGAAG
ATTAGAATAGAG Run BLAST on NCBI protein sequence of TCONS_00051356-protein >TCONS_00051356-protein ID=TCONS_00051356-protein|Name=TCONS_00051356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
LYSNLLDKINSENKQAILMGDFNIDLLKADLKPSHKDFLETNLSRFFTPQ
ITRPTRITPYSKTLIDNIFTNILSFESNSHNLICGISDHLPQILNLDISA
NKRTKTKKSWRDFSKFDREDFLLDFISISWPDHFENKTSNQKLETFINLT
NNLVDQHAPIKTKFINDFISPKPWVTFGLRQAMLNRDKYHGEYLKLKDDS
PEKIPKFARYKRHRNFIIKLLRISKNKYIKEYFFRHKTNLSLIWKTINEI
TNTKTKDSSSPKLLIHNNAHITKEEDIAELFNDFYGSIAEKTKAKIPPTN
KIFTDFMGNPTNASIHLTPTTPMAVYKLIEKIDLKKASGPNSIDPKILKM
TSITASEIISYIFNECLDKGEYPDCLKKANIKPLHKKNARTEVSNYRPIS
LLSN Run BLAST on NCBI transcript from alignment at scaffold_200:217372..218583 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051356 ID=TCONS_00051356|Name=TCONS_00051356|organism=Clytia hemisphaerica|type=transcript|length=1212bp|location=Sequence derived from alignment at scaffold_200:217372..218583 (Clytia hemisphaerica)
CTCTATTCTAATCTTCTTGATAAAATCAACAGTGAAAACAAACAGGCAAT
ATTAATGGGTGATTTTAACATTGATCTTTTGAAAGCTGATCTTAAACCTA
GTCACAAGGATTTTCTTGAAACAAATCTTTCTCGATTTTTCACTCCTCAA
ATCACCAGACCAACTAGAATAACGCCTTACTCCAAAACTCTCATTGACAA
CATTTTCACAAACATACTGTCTTTTGAATCAAATTCTCATAATCTTATTT
GCGGAATTTCTGACCATCTCCCCCAAATTCTTAATCTTGATATTTCAGCT
AACAAACGtaccaaaacaaagaaatcatgGAGGGACTTTAGCAAATTTGA
TCGGGAAGATTTTTTACTCGACTTTATCTCTATTTCTTGGCCTGaccatt
ttgaaaacaaaacttcaAACCAAAAACTTGAAACTTTTATCAACCTTACC
AACAACCTTGTTGATCAACATgctccaatcaaaacaaagtttatcaatGA
TTTTATCTCACCCAAACCATGGGTCACTTTCGGCTTGCGTCAAGCTATGC
TCAACAGAGACAAGTATCACGGTGAATATTTAAAACTCAAAGACGATTCT
CctgaaaaaattccaaaatttgctaGATACAAAAGACACAGGAATTTCAT
AATAAAACTTCTCAGAATTAGCAAAAACAAATACATCAAAGAATACTTTT
TCCGTCACAAGACAAACTTATCACTCATTTGGAAAACTATAAACGAAATC
ACTAACACCAAAACTAAAGATAGCTCCTCTCCTAAGCTTTTGATTCACAA
CAATGCTCATATAACTAAAGAAGAGGATATAGCagaactttttaatgatt
tttatgggTCGATAGCCGAAAAAACCAAGGCTAAAATACCTCCAACCAAC
aagattttcactgattttatGGGCAATCCTACTAATGCTTCCATTCATCT
TACTCCAACAACTCCAATGGCTGTATATAAacttattgaaaaaattgact
tGAAAAAGGCGTCTGGCCCTAACAGTATCGATCCTAAAATTCTAAAGATG
ACATCAATTACTGCTAGTGAAATTATATCTTACATATTCAATGAATGTCT
TGACAAAGGTGAGTATCCTGACTGTCTAAAAAAAGCAAATATTAAGCCTC
TCCACAAAAAGAACGCTAGGACCGAGGTAAGTAATTATAGGCCAATCTCT
TTActatcaaac Coding sequence (CDS) from alignment at scaffold_200:217372..218583 >TCONS_00051356 ID=TCONS_00051356|Name=TCONS_00051356|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_200:217372..218583 (Clytia hemisphaerica)
CTCTATTCTAATCTTCTTGATAAAATCAACAGTGAAAACAAACAGGCAAT
ATTAATGGGTGATTTTAACATTGATCTTTTGAAAGCTGATCTTAAACCTA
GTCACAAGGATTTTCTTGAAACAAATCTTTCTCGATTTTTCACTCCTCAA
ATCACCAGACCAACTAGAATAACGCCTTACTCCAAAACTCTCATTGACAA
CATTTTCACAAACATACTGTCTTTTGAATCAAATTCTCATAATCTTATTT
GCGGAATTTCTGACCATCTCCCCCAAATTCTTAATCTTGATATTTCAGCT
AACAAACGtaccaaaacaaagaaatcatgGAGGGACTTTAGCAAATTTGA
TCGGGAAGATTTTTTACTCGACTTTATCTCTATTTCTTGGCCTGaccatt
ttgaaaacaaaacttcaAACCAAAAACTTGAAACTTTTATCAACCTTACC
AACAACCTTGTTGATCAACATgctccaatcaaaacaaagtttatcaatGA
TTTTATCTCACCCAAACCATGGGTCACTTTCGGCTTGCGTCAAGCTATGC
TCAACAGAGACAAGTATCACGGTGAATATTTAAAACTCAAAGACGATTCT
CctgaaaaaattccaaaatttgctaGATACAAAAGACACAGGAATTTCAT
AATAAAACTTCTCAGAATTAGCAAAAACAAATACATCAAAGAATACTTTT
TCCGTCACAAGACAAACTTATCACTCATTTGGAAAACTATAAACGAAATC
ACTAACACCAAAACTAAAGATAGCTCCTCTCCTAAGCTTTTGATTCACAA
CAATGCTCATATAACTAAAGAAGAGGATATAGCagaactttttaatgatt
tttatgggTCGATAGCCGAAAAAACCAAGGCTAAAATACCTCCAACCAAC
aagattttcactgattttatGGGCAATCCTACTAATGCTTCCATTCATCT
TACTCCAACAACTCCAATGGCTGTATATAAacttattgaaaaaattgact
tGAAAAAGGCGTCTGGCCCTAACAGTATCGATCCTAAAATTCTAAAGATG
ACATCAATTACTGCTAGTGAAATTATATCTTACATATTCAATGAATGTCT
TGACAAAGGTGAGTATCCTGACTGTCTAAAAAAAGCAAATATTAAGCCTC
TCCACAAAAAGAACGCTAGGACCGAGGTAAGTAATTATAGGCCAATCTCT
TTActatcaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051356-exon-scaffold_200-1491911889:217372..218583 | TCONS_00051356-exon-scaffold_200-1491911889:217372..218583 | Clytia hemisphaerica | exon |
| TCONS_00051356-exon-scaffold_200-1510915933:217372..218583 | TCONS_00051356-exon-scaffold_200-1510915933:217372..218583 | Clytia hemisphaerica | exon |
| TCONS_00051356-exon-scaffold_200-1575043694:217372..218583 | TCONS_00051356-exon-scaffold_200-1575043694:217372..218583 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:217372..218583 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
|
