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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051350 ID=TCONS_00051350|Name=TCONS_00051350|organism=Clytia hemisphaerica|type=transcript|length=1394bp
ATCATTTtgtaaataggcagtcgaactctattagctttaaagctagtaca
tatttgtacacttttttcgactttaaagaatatacacATTAACACATTCA
CATTAACACATTAACATGGGGTAGATATACATCTGATGCTGctatcatga
atatcataaaaGGAGACTTTTCTCTTTACTTGCTTACCAAGGTCaaaaca
ttttgcaaaaaatgcaCAATTTTCTCCAGAGGAGAAATCTTTCATCAggg
aagaaaacaaagaaataatcaagtatctaaagaaaaagataatcaaAAAA
TGCCATCATGAAGATGAGGAATTTATCTCCCCAATATTTACCAGACCAAA
ACCAGATGGTTCAATTAGAATGATATTGaacttaaaaatattgaatgaaC
ACATAAAATTTGAACACTTCAAAATGAGCAATATTTATTCAGTACTCAAC
ATGATTTCCAAGGGATGTTTTATGgcaaaaattgacttaaaagatGCATA
TTACAGTGTAAGGATAGCTAAGAGATATACCAATACCAAAAGTAtctgaa
atttgaatttaataaTCAATTATACCAATTTACTTGTTTTCCAAATGGGC
TTGGGCCATGCCCAAGaaagtttacaaaaataataaaagtacCAACCTCA
AATCTTAGAAAAGCTGGTATCCCAGTGTGTGGATATATTGATGATCTCTT
TACTAAATCTCAATCCTATGAAGGCTGTcttaaaaacattattgaaatAG
TAAAATAATTTCACTATGTTGGTTTTGCCATTCATCCAATAAAATCTGAA
TTGGAACCAAAAcagattttaacttttttggggtTTGTTATAAATTCCAT
TGAAATGTCAGTATCTTTGACCCCAGAGAAGGAAAACCAACTTAATCTAG
TATCACAATTACTAAAAATCAAGAATCCAATAATAAGATTTGTAGCAAAA
GTTGTTGGTACCTTGGTTTCTAGTTTCCCGGCTGTAAAATTTGCTCAACT
GCACTATAGACatattgaaaaagtaaaatctgAAGCATTGGcaaaaaata
aaggaaattaTGAAGCCAAATGCCAACTTTCCAATGAATCTCGGGCAGAa
ttaaaatggtggaaaacaGCCATTCTTAAAAATTGGATAAGTCCACCACC
AATAACTCTAGAAATGAAAACTGATGCATCCACAGGTGATTTCTCTCCAA
ATTCCTCTGGCGGTTGGGGAGCAACATGCCAGGATATTCAATGTGGAGGT
GGATGGGACATTATAAAGCAATCTTACCATATAAATACTCGTGAGCTTCT
GGCTATCTACTTTGCACTTCgatcttttaaaaacctttgtAAAAGTAAAC
ATGTTCGTATTCTGAGTGATAACACTACAGCAATTTGCACGGTC Run BLAST on NCBI protein sequence of TCONS_00051350-protein >TCONS_00051350-protein ID=TCONS_00051350-protein|Name=TCONS_00051350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MSVSLTPEKENQLNLVSQLLKIKNPIIRFVAKVVGTLVSSFPAVKFAQLH
YRHIEKVKSEALAKNKGNYEAKCQLSNESRAELKWWKTAILKNWISPPPI
TLEMKTDASTGDFSPNSSGGWGATCQDIQCGGGWDIIKQSYHINTRELLA
IYFALRSFKNLCKSKHVRILSDNTTAICTV Run BLAST on NCBI transcript from alignment at scaffold_200:198839..200232 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051350 ID=TCONS_00051350|Name=TCONS_00051350|organism=Clytia hemisphaerica|type=transcript|length=1394bp|location=Sequence derived from alignment at scaffold_200:198839..200232 (Clytia hemisphaerica)
GACCGTGCAAATTGCTGTAGTGTTATCACTCAGAATACGAACATGTTTAC
TTTTacaaaggtttttaaaagatcGAAGTGCAAAGTAGATAGCCAGAAGC
TCACGAGTATTTATATGGTAAGATTGCTTTATAATGTCCCATCCACCTCC
ACATTGAATATCCTGGCATGTTGCTCCCCAACCGCCAGAGGAATTTGGAG
AGAAATCACCTGTGGATGCATCAGTTTTCATTTCTAGAGTTATTGGTGGT
GGACTTATCCAATTTTTAAGAATGGCtgttttccaccattttaatTCTGC
CCGAGATTCATTGGAAAGTTGGCATTTGGCTTCAtaatttcctttatttt
ttgCCAATGCTTcagattttactttttcaatatGTCTATAGTGCAGTTGA
GCAAATTTTACAGCCGGGAAACTAGAAACCAAGGTACCAACAACTTTTGC
TACAAATCTTATTATTGGATTCTTGATTTTTAGTAATTGTGATACTAGAT
TAAGTTGGTTTTCCTTCTCTGGGGTCAAAGATACTGACATTTCAATGGAA
TTTATAACAAaccccaaaaaagttaaaatctgTTTTGGTTCCAATTCAGA
TTTTATTGGATGAATGGCAAAACCAACATAGTGAAATTATTTTACTattt
caataatgtttttaagACAGCCTTCATAGGATTGAGATTTAGTAAAGAGA
TCATCAATATATCCACACACTGGGATACCAGCTTTTCTAAGATTTGAGGT
TGgtacttttattatttttgtaaactttCTTGGGCATGGCCCAAGCCCAT
TTGGAAAACAAGTAAATTGGTATAATTGAttattaaattcaaatttcaga
TACTTTTGGTATTGGTATATCTCTTAGCTATCCTTACACTGTAATATGCa
tcttttaagtcaatttttgcCATAAAACATCCCTTGGAAATCATGTTGAG
TACTGAATAAATATTGCTCATTTTGAAGTGTTCAAATTTTATGTGttcat
tcaatatttttaagttCAATATCATTCTAATTGAACCATCTGGTTTTGGT
CTGGTAAATATTGGGGAGATAAATTCCTCATCTTCATGATGGCATTTTtt
gattatctttttctttagatacttgattatttctttgttttcttcccTGA
TGAAAGATTTCTCCTCTGGAGAAAATTGtgcattttttgcaaaatgtttt
GACCTTGGTAAGCAAGTAAAGAGAAAAGTCTCCttttatgatattcatga
tagCAGCATCAGATGTATATCTACCCCATGTTAATGTGTTAATGTGAATG
TGTTAATgtgtatattctttaaagtcgaaaaaagtgtacaaatatgtact
agctttaaagctaatagagttcgactgcctatttacaAAATGAT Coding sequence (CDS) from alignment at scaffold_200:198839..200232 >TCONS_00051350 ID=TCONS_00051350|Name=TCONS_00051350|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_200:198839..200232 (Clytia hemisphaerica)
GACCGTGCAAATTGCTGTAGTGTTATCACTCAGAATACGAACATGTTTAC
TTTTacaaaggtttttaaaagatcGAAGTGCAAAGTAGATAGCCAGAAGC
TCACGAGTATTTATATGGTAAGATTGCTTTATAATGTCCCATCCACCTCC
ACATTGAATATCCTGGCATGTTGCTCCCCAACCGCCAGAGGAATTTGGAG
AGAAATCACCTGTGGATGCATCAGTTTTCATTTCTAGAGTTATTGGTGGT
GGACTTATCCAATTTTTAAGAATGGCtgttttccaccattttaatTCTGC
CCGAGATTCATTGGAAAGTTGGCATTTGGCTTCAtaatttcctttatttt
ttgCCAATGCTTcagattttactttttcaatatGTCTATAGTGCAGTTGA
GCAAATTTTACAGCCGGGAAACTAGAAACCAAGGTACCAACAACTTTTGC
TACAAATCTTATTATTGGATTCTTGATTTTTAGTAATTGTGATACTAGAT
TAAGTTGGTTTTCCTTCTCTGGGGTCAAAGATACTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051350-exon-scaffold_200-1491911889:198839..200232 | TCONS_00051350-exon-scaffold_200-1491911889:198839..200232 | Clytia hemisphaerica | exon |
| TCONS_00051350-exon-scaffold_200-1510915933:198839..200232 | TCONS_00051350-exon-scaffold_200-1510915933:198839..200232 | Clytia hemisphaerica | exon |
| TCONS_00051350-exon-scaffold_200-1575043694:198839..200232 | TCONS_00051350-exon-scaffold_200-1575043694:198839..200232 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:198839..200232 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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