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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051344 ID=TCONS_00051344|Name=TCONS_00051344|organism=Clytia hemisphaerica|type=transcript|length=1932bp
CAAGGTCaaaacattttgcaaaaaatgcaCAATTTTCTCCAGAGGAGAAA
TCTTTCATCAGGGAAGAAATAATCAAGTatctaaagaaaaagataatcaa
AAAATGCCATCATGAAGATGAGGAATTTAACTCCCCAATTTTTACCAGAC
CAAAGTCAGATGGTTCAATTAGAATGATATTGaacttaaaaatattgaat
gaaCACATAAAATTTGAACACTTCAAAATGGGCAATATTTATTCAGTACT
CCAAGGGATGTTTTATGgcaaaaattgacttaaaagatGCATATTACAGT
GTAAGGATAGCTAAGGGATACCAAAAGTAtctgaaatttgaatttgataa
tCAATTATACCAATTTACTTGTTTTCCAAATGGGCTTGGGCCATGCCCAA
GaaagtttacaaaaataataaaagtacCAACCTCAAATCTTAGAAAAGCT
GGTATCCCAGTGTGTAGTGGATATATTTATGATCTCTTTACTAAATCTCA
ATCCTATGAAGGCTGTcttaaaaacattattgaaatAGTAAAAGAATTTC
ACTATCTTGGTTTTGCCATTCATCCAATAAAATCTGAATTTGAACCAAAA
cagattttaacttttttggggtTTGTTATAAATTCAATTGAAATGTCAGT
ATCTTTGACCCCAGAGAAGGAAAACCAACTTAAAAATCTAGTATCACAAT
TACTAAAAATCAAGAATCCAATAATAAGATTTGTAGCAAAAGTACCTTGG
TTTCTAGTTTCCCGGCTGTAAAATTTGCTCAACTGCACTATAGACatatt
gaaaaagtaaaatctgAAGCATTGGcaaaaaataaaggaaattaTGAAGC
CAAATGCCAACTTTCCAATGAATCTCGGGCAGAattaaaatggtggaaaa
caGCCATTCTTAAAAATTGGATAAGTCCACCACCAATAACTCTAGAAATG
AAAACTGATGCATCCACAGGTGATTTCTCTCCAAATTCCTCTGGCGGTTT
GGGAGCAACATGCCAGGATATTCAATGTGGAGGTGGATGGGACATTATAG
AGCAATCTTACCATATAAATACTCGTGAGCTGCTGGCTATCTACTTTGCA
CTTCgatcttttaaaaacctttgtAAAAGTAAACATGTTCGTATTCTGAG
TGATAACACTACAGCAATTGGCACGGTCAACAAAATGGGCTCTAGCAAAA
GTCTTATAAATAATGAGATAAGCAAAGACATTTGGCAGTTTtgtgaagaa
aatgaaatttgggTCACAGCAACTTACATTCCAGGAATAGAGAATGATAT
TGCTGACACAGAATCCAGAAGAGAGTATAAAGAGGCAGAGTGGAAACTAA
ATCCTGAAATCTTTGGATTTCTAACTGCTACTTTAAACTTCAAACCAGAA
ATAGACTATTTTGCTAGTAGGCTTAACACTCAGCTACCCAAATATGTCTC
TTACAGGCCTGACCCATATGCTCACTTAATAACTGCTTTAGCCCAAAACT
GGTCCAACACTAAAGGCTATATTTTCCCTCCTTTTAGCTTAATCGACCGT
GTACTTCACAAGATTCGACACGAAAAAGCAACAGCAATGGTAGTAGTCCC
AGTGTGGACCACCCAACCATGGTATACAACTTACATGGAAATGCTGAGAT
CGAAGCTGGTAACGATTCCACCCTGTCCAACCGTAATGACAATGCCACAA
ACTCCAAATCTTGTACACCCTCTTCACAAAAACCTTACCCTAATGACTGG
GATCTTATCCAGCAAAGATATCAAAATGAGGGAATAAATGAAAGCTCAAT
CAACATTCTTCTTACAAGTTggaaaaaaaggtacaaaatCTTCCTATGCT
AAGTACCTCACAGCTTGGAAAGACTTCTCTTTGTCAAGAGGTATTGATTC
TTTTGACCCAACAATACCACAAGCCTTAGCTT Run BLAST on NCBI protein sequence of TCONS_00051344-protein >TCONS_00051344-protein ID=TCONS_00051344-protein|Name=TCONS_00051344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MKTDASTGDFSPNSSGGLGATCQDIQCGGGWDIIEQSYHINTRELLAIYF
ALRSFKNLCKSKHVRILSDNTTAIGTVNKMGSSKSLINNEISKDIWQFCE
ENEIWVTATYIPGIENDIADTESRREYKEAEWKLNPEIFGFLTATLNFKP
EIDYFASRLNTQLPKYVSYRPDPYAHLITALAQNWSNTKGYIFPPFSLID
RVLHKIRHEKATAMVVVPVWTTQPWYTTYMEMLRSKLVTIPPCPTVMTMP
QTPNLVHPLHKNLTLMTGILSSKDIKMRE Run BLAST on NCBI transcript from alignment at scaffold_200:176175..178106 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051344 ID=TCONS_00051344|Name=TCONS_00051344|organism=Clytia hemisphaerica|type=transcript|length=1932bp|location=Sequence derived from alignment at scaffold_200:176175..178106 (Clytia hemisphaerica)
AAGCTAAGGCTTGTGGTATTGTTGGGTCAAAAGAATCAATACCTCTTGAC
AAAGAGAAGTCTTTCCAAGCTGTGAGGTACTTAGCATAGGAAGattttgt
acctttttttccAACTTGTAAGAAGAATGTTGATTGAGCTTTCATTTATT
CCCTCATTTTGATATCTTTGCTGGATAAGATCCCAGTCATTAGGGTAAGG
TTTTTGTGAAGAGGGTGTACAAGATTTGGAGTTTGTGGCATTGTCATTAC
GGTTGGACAGGGTGGAATCGTTACCAGCTTCGATCTCAGCATTTCCATGT
AAGTTGTATACCATGGTTGGGTGGTCCACACTGGGACTACTACCATTGCT
GTTGCTTTTTCGTGTCGAATCTTGTGAAGTACACGGTCGATTAAGCTAAA
AGGAGGGAAAATATAGCCTTTAGTGTTGGACCAGTTTTGGGCTAAAGCAG
TTATTAAGTGAGCATATGGGTCAGGCCTGTAAGAGACATATTTGGGTAGC
TGAGTGTTAAGCCTACTAGCAAAATAGTCTATTTCTGGTTTGAAGTTTAA
AGTAGCAGTTAGAAATCCAAAGATTTCAGGATTTAGTTTCCACTCTGCCT
CTTTATACTCTCTTCTGGATTCTGTGTCAGCAATATCATTCTCTATTCCT
GGAATGTAAGTTGCTGTGAcccaaatttcattttcttcacaAAACTGCCA
AATGTCTTTGCTTATCTCATTATTTATAAGACTTTTGCTAGAGCCCATTT
TGTTGACCGTGCCAATTGCTGTAGTGTTATCACTCAGAATACGAACATGT
TTACTTTTacaaaggtttttaaaagatcGAAGTGCAAAGTAGATAGCCAG
CAGCTCACGAGTATTTATATGGTAAGATTGCTCTATAATGTCCCATCCAC
CTCCACATTGAATATCCTGGCATGTTGCTCCCAAACCGCCAGAGGAATTT
GGAGAGAAATCACCTGTGGATGCATCAGTTTTCATTTCTAGAGTTATTGG
TGGTGGACTTATCCAATTTTTAAGAATGGCtgttttccaccattttaatT
CTGCCCGAGATTCATTGGAAAGTTGGCATTTGGCTTCAtaatttccttta
ttttttgCCAATGCTTcagattttactttttcaatatGTCTATAGTGCAG
TTGAGCAAATTTTACAGCCGGGAAACTAGAAACCAAGGTACTTTTGCTAC
AAATCTTATTATTGGATTCTTGATTTTTAGTAATTGTGATACTAGATTTT
TAAGTTGGTTTTCCTTCTCTGGGGTCAAAGATACTGACATTTCAATTGAA
TTTATAACAAaccccaaaaaagttaaaatctgTTTTGGTTCAAATTCAGA
TTTTATTGGATGAATGGCAAAACCAAGATAGTGAAATTCTTTTACTattt
caataatgtttttaagACAGCCTTCATAGGATTGAGATTTAGTAAAGAGA
TCATAAATATATCCACTACACACTGGGATACCAGCTTTTCTAAGATTTGA
GGTTGgtacttttattatttttgtaaactttCTTGGGCATGGCCCAAGCC
CATTTGGAAAACAAGTAAATTGGTATAATTGattatcaaattcaaatttc
agaTACTTTTGGTATCCCTTAGCTATCCTTACACTGTAATATGCatcttt
taagtcaatttttgcCATAAAACATCCCTTGGAGTACTGAATAAATATTG
CCCATTTTGAAGTGTTCAAATTTTATGTGttcattcaatatttttaagtt
CAATATCATTCTAATTGAACCATCTGACTTTGGTCTGGTAAAAATTGGGG
AGTTAAATTCCTCATCTTCATGATGGCATTTTttgattatctttttcttt
agatACTTGATTATTTCTTCCCTGATGAAAGATTTCTCCTCTGGAGAAAA
TTGtgcattttttgcaaaatgttttGACCTTG Coding sequence (CDS) from alignment at scaffold_200:176175..178106 >TCONS_00051344 ID=TCONS_00051344|Name=TCONS_00051344|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_200:176175..178106 (Clytia hemisphaerica)
TTATTCCCTCATTTTGATATCTTTGCTGGATAAGATCCCAGTCATTAGGG
TAAGGTTTTTGTGAAGAGGGTGTACAAGATTTGGAGTTTGTGGCATTGTC
ATTACGGTTGGACAGGGTGGAATCGTTACCAGCTTCGATCTCAGCATTTC
CATGTAAGTTGTATACCATGGTTGGGTGGTCCACACTGGGACTACTACCA
TTGCTGTTGCTTTTTCGTGTCGAATCTTGTGAAGTACACGGTCGATTAAG
CTAAAAGGAGGGAAAATATAGCCTTTAGTGTTGGACCAGTTTTGGGCTAA
AGCAGTTATTAAGTGAGCATATGGGTCAGGCCTGTAAGAGACATATTTGG
GTAGCTGAGTGTTAAGCCTACTAGCAAAATAGTCTATTTCTGGTTTGAAG
TTTAAAGTAGCAGTTAGAAATCCAAAGATTTCAGGATTTAGTTTCCACTC
TGCCTCTTTATACTCTCTTCTGGATTCTGTGTCAGCAATATCATTCTCTA
TTCCTGGAATGTAAGTTGCTGTGAcccaaatttcattttcttcacaAAAC
TGCCAAATGTCTTTGCTTATCTCATTATTTATAAGACTTTTGCTAGAGCC
CATTTTGTTGACCGTGCCAATTGCTGTAGTGTTATCACTCAGAATACGAA
CATGTTTACTTTTacaaaggtttttaaaagatcGAAGTGCAAAGTAGATA
GCCAGCAGCTCACGAGTATTTATATGGTAAGATTGCTCTATAATGTCCCA
TCCACCTCCACATTGAATATCCTGGCATGTTGCTCCCAAACCGCCAGAGG
AATTTGGAGAGAAATCACCTGTGGATGCATCAGTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051344-exon-scaffold_200-1491911889:176175..178106 | TCONS_00051344-exon-scaffold_200-1491911889:176175..178106 | Clytia hemisphaerica | exon |
| TCONS_00051344-exon-scaffold_200-1510915933:176175..178106 | TCONS_00051344-exon-scaffold_200-1510915933:176175..178106 | Clytia hemisphaerica | exon |
| TCONS_00051344-exon-scaffold_200-1575043694:176175..178106 | TCONS_00051344-exon-scaffold_200-1575043694:176175..178106 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:176175..178106 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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