TCONS_00051343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051343
Unique NameTCONS_00051343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051343 ID=TCONS_00051343|Name=TCONS_00051343|organism=Clytia hemisphaerica|type=transcript|length=656bp
TGAATATCGCATTGATCAGTTACGATCGTTACGTCAAGTTTTACCGATTA
CGCGATCGGGAAATGAGTAGACGTGAGTTGTACCTAATGATCTTAGCGAC
TTGGCTTTCCCCCGTCACTCTGTTTTTACCGATTATGACTGACAGACTTG
TGTTTATGATATCGTTAACCGCTTTGTTTACATTACCTTTGATAATTATT
ATCGCGGCATACTACAAAGTGGTCAGATATGTCAAGAAGAACACATTGAT
ATTTGATAAcatcaaacaaaatcaaattcGTCGCGAGAGAAACAAGAAAA
TCGTGAAAAGGTTAACTATTCTCGTCATTTGCTACTTCGTATGTTTAATA
CCGCTGACTGTCAATTTCTTCttagaaattttttataaagtataaTCGAG
AGGCGAAAAGACGGTTGCGCACTAAACGTTAGCTATCGTTGGTATATTTG
CCACTTCTCTCAATTCCTTCTTAAACCCGATAGTCTATGTCTCAAATTTC
CCAGAAttcaagaaaatcttcaaaagtttATTTGGATTGTCAGCCAGGGT
GTCAGGGGGTAGCTAAAGGTCCACAAGAAGTCCTGGAAACAGTGCTCTTA
AAGGATAGTTAGTCTCAAAATCAAAgccatttcaaaattcattgataATA
TCCGTG
Run BLAST on NCBI

protein sequence of TCONS_00051343-protein

>TCONS_00051343-protein ID=TCONS_00051343-protein|Name=TCONS_00051343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
NIALISYDRYVKFYRLRDREMSRRELYLMILATWLSPVTLFLPIMTDRLV
FMISLTALFTLPLIIIIAAYYKVVRYVKKNTLIFDNIKQNQIRRERNKKI
VKRLTILVICYFVCLIPLTVNFFLEIFYKV
Run BLAST on NCBI

transcript from alignment at scaffold_200:172683..173338

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051343 ID=TCONS_00051343|Name=TCONS_00051343|organism=Clytia hemisphaerica|type=transcript|length=656bp|location=Sequence derived from alignment at scaffold_200:172683..173338 (Clytia hemisphaerica)
CACGGATATtatcaatgaattttgaaatggcTTTGATTTTGAGACTAACT
ATCCTTTAAGAGCACTGTTTCCAGGACTTCTTGTGGACCTTTAGCTACCC
CCTGACACCCTGGCTGACAATCCAAATaaacttttgaagattttcttgaa
TTCTGGGAAATTTGAGACATAGACTATCGGGTTTAAGAAGGAATTGAGAG
AAGTGGCAAATATACCAACGATAGCTAACGTTTAGTGCGCAACCGTCTTT
TCGCCTCTCGAttatactttataaaaaatttctaaGAAGAAATTGACAGT
CAGCGGTATTAAACATACGAAGTAGCAAATGACGAGAATAGTTAACCTTT
TCACGATTTTCTTGTTTCTCTCGCGACgaatttgattttgtttgatgTTA
TCAAATATCAATGTGTTCTTCTTGACATATCTGACCACTTTGTAGTATGC
CGCGATAATAATTATCAAAGGTAATGTAAACAAAGCGGTTAACGATATCA
TAAACACAAGTCTGTCAGTCATAATCGGTAAAAACAGAGTGACGGGGGAA
AGCCAAGTCGCTAAGATCATTAGGTACAACTCACGTCTACTCATTTCCCG
ATCGCGTAATCGGTAAAACTTGACGTAACGATCGTAACTGATCAATGCGA
TATTCA

Coding sequence (CDS) from alignment at scaffold_200:172683..173338

>TCONS_00051343 ID=TCONS_00051343|Name=TCONS_00051343|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_200:172683..173338 (Clytia hemisphaerica)
ttatactttataaaaaatttctaaGAAGAAATTGACAGTCAGCGGTATTA
AACATACGAAGTAGCAAATGACGAGAATAGTTAACCTTTTCACGATTTTC
TTGTTTCTCTCGCGACgaatttgattttgtttgatgTTATCAAATATCAA
TGTGTTCTTCTTGACATATCTGACCACTTTGTAGTATGCCGCGATAATAA
TTATCAAAGGTAATGTAAACAAAGCGGTTAACGATATCATAAACACAAGT
CTGTCAGTCATAATCGGTAAAAACAGAGTGACGGGGGAAAGCCAAGTCGC
TAAGATCATTAGGTACAACTCACGTCTACTCATTTCCCGATCGCGTAATC
GGTAAAACTTGACGTAACGATCGTAACTGATCAATGCGATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032530XLOC_032530Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051343-proteinTCONS_00051343-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051343-exon-scaffold_200-1491911889:172683..173338TCONS_00051343-exon-scaffold_200-1491911889:172683..173338Clytia hemisphaericaexon
TCONS_00051343-exon-scaffold_200-1510915933:172683..173338TCONS_00051343-exon-scaffold_200-1510915933:172683..173338Clytia hemisphaericaexon
TCONS_00051343-exon-scaffold_200-1575043694:172683..173338TCONS_00051343-exon-scaffold_200-1575043694:172683..173338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:172683..173338 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0793686	0.0773968	0	0	0.321099	0	0.408163	0.477647	0.735706	0.662757	0.988747	0.422872	0.0527855	0.0616406	0	0.048365	0	0	0	0	0.153476	0	0	0.165469	1.36343	0.304208	0.10883	0	0.264279	0.0897527
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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