TCONS_00051339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051339
Unique NameTCONS_00051339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051339 ID=TCONS_00051339|Name=TCONS_00051339|organism=Clytia hemisphaerica|type=transcript|length=489bp
aatgaCCTATCCAAAGTGGTcttcaagtttgtttttaaaagatgAATGTC
CTTCAATTGTCGTAAGACCACCAGGGAGATCATTCCAGAGTTTAGCTGTT
GATGGAGCAAATGAGTTTTTGTAGGCAAGCACTCGCCCATGCATTTGCTT
GAATCGAATACATGTTGAAAACCTAGCcctgtttgaaaatatagtcTCAG
GAATTGCAACTACTCCGTGAATGATGTTGTGCATCATTGTAAGGTTGCGA
ATTTTCCTTTGAGCTTCTAAGGTTTTCCATTCAAGATCGTTCATCATTCT
CGTTGGACTGGAGTGACGGTTCCAGTCAGCATAAACAAAGCGAGCAGATT
TCCTTTGAATCATTTCAATTCGGTCTCGCAGACCTTGATTGCTCTCCCCG
ATAGGGTTCCAGACAGTAGATGCGTAGTTGAGGATTGGGTTTATGTACGT
CTTGTAGGCTTTTGCTTTGGTGGCTTTGGTGCATCCTCT
Run BLAST on NCBI

protein sequence of TCONS_00051339-protein

>TCONS_00051339-protein ID=TCONS_00051339-protein|Name=TCONS_00051339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
RGCTKATKAKAYKTYINPILNYASTVWNPIGESNQGLRDRIEMIQRKSAR
FVYADWNRHSSPTRMMNDLEWKTLEAQRKIRNLTMMHNIIHGVVAIPETI
FSNRARFSTCIRFKQMHGRVLAYKNSFAPSTAKLWNDLPGGLTTIEGHSS
FKNKLEDHFG
Run BLAST on NCBI

transcript from alignment at scaffold_200:9519..10007

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051339 ID=TCONS_00051339|Name=TCONS_00051339|organism=Clytia hemisphaerica|type=transcript|length=489bp|location=Sequence derived from alignment at scaffold_200:9519..10007 (Clytia hemisphaerica)
AGAGGATGCACCAAAGCCACCAAAGCAAAAGCCTACAAGACGTACATAAA
CCCAATCCTCAACTACGCATCTACTGTCTGGAACCCTATCGGGGAGAGCA
ATCAAGGTCTGCGAGACCGAATTGAAATGATTCAAAGGAAATCTGCTCGC
TTTGTTTATGCTGACTGGAACCGTCACTCCAGTCCAACGAGAATGATGAA
CGATCTTGAATGGAAAACCTTAGAAGCTCAAAGGAAAATTCGCAACCTTA
CAATGATGCACAACATCATTCACGGAGTAGTTGCAATTCCTGAgactata
ttttcaaacaggGCTAGGTTTTCAACATGTATTCGATTCAAGCAAATGCA
TGGGCGAGTGCTTGCCTACAAAAACTCATTTGCTCCATCAACAGCTAAAC
TCTGGAATGATCTCCCTGGTGGTCTTACGACAATTGAAGGACATTcatct
tttaaaaacaaacttgaagACCACTTTGGATAGGtcatt

Coding sequence (CDS) from alignment at scaffold_200:9519..10007

>TCONS_00051339 ID=TCONS_00051339|Name=TCONS_00051339|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_200:9519..10007 (Clytia hemisphaerica)
AGAGGATGCACCAAAGCCACCAAAGCAAAAGCCTACAAGACGTACATAAA
CCCAATCCTCAACTACGCATCTACTGTCTGGAACCCTATCGGGGAGAGCA
ATCAAGGTCTGCGAGACCGAATTGAAATGATTCAAAGGAAATCTGCTCGC
TTTGTTTATGCTGACTGGAACCGTCACTCCAGTCCAACGAGAATGATGAA
CGATCTTGAATGGAAAACCTTAGAAGCTCAAAGGAAAATTCGCAACCTTA
CAATGATGCACAACATCATTCACGGAGTAGTTGCAATTCCTGAgactata
ttttcaaacaggGCTAGGTTTTCAACATGTATTCGATTCAAGCAAATGCA
TGGGCGAGTGCTTGCCTACAAAAACTCATTTGCTCCATCAACAGCTAAAC
TCTGGAATGATCTCCCTGGTGGTCTTACGACAATTGAAGGACATTcatct
tttaaaaacaaacttgaagACCACTTTGGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032526XLOC_032526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051339-exon-scaffold_200-1491911889:9519..10007TCONS_00051339-exon-scaffold_200-1491911889:9519..10007Clytia hemisphaericaexon
TCONS_00051339-exon-scaffold_200-1510915933:9519..10007TCONS_00051339-exon-scaffold_200-1510915933:9519..10007Clytia hemisphaericaexon
TCONS_00051339-exon-scaffold_200-1575043694:9519..10007TCONS_00051339-exon-scaffold_200-1575043694:9519..10007Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051339-proteinTCONS_00051339-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:9519..10007 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.822275	1.12859	1.59262	2.423	1.56679	1.52418	1.72814	1.14016	0.591773	1.05093	0.833582	0.683198	1.16248	1.52463	0.391572	1.05505	1.48459	1.74755	1.06544	0.947444	1.42388	0.511094	0.854266	0.727683	1.06872	2.05598	1.24274	0.445063	1.72331	0.998333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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