TCONS_00051297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051297
Unique NameTCONS_00051297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1144

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051297 ID=TCONS_00051297|Name=TCONS_00051297|organism=Clytia hemisphaerica|type=transcript|length=1144bp
ACTATAACGAAATATATTTTGTAGAATTTGACGGCGTGGACGTTCTAAAA
GCAGCCTAACTgactaaatatttcttttttctcagaGAGAGTGTATTTCA
GTTCACGTTGGACAAGCCGGTGTCCAAATCGGAAATGCTTGTTGGGAATT
ATATTGTTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCTTCAGATA
AAACCATTGGAGGGGGAGATGATTCATTCAACACTTTCTTCAGTGAGACT
GGTTCTGGTAAACACGTCCCCAGAGCTGTTTTCATCGATCTTGAACCCTC
AGTTGTTGGTAAGAGCCAAAGTTATTTAATAAACTAATTCTTATTTTTCT
GCTCACTGTATTTTGTTTGGTATAGACACAGCGATATTACAAAGATGTCT
CTCGTAAAGCTTTAAACCCCTTGTCAattaattcttgatatgcgtaagtc
atttttctagcggaaacacccgaaaaaatccgggatttgacccctctctg
ttactaaaaatagaaacacagaggtcaaaatccggcttttttgggtgctt
ccgttaaaaatatgacgtcatcttgacttacgcatatcaagaataagaGA
ATTTAAACCTTAGACGGCATTCCAAACATTTACAATTTGGGACGGGCTTA
AGACTGAAAACATCCGTTTAGATCAGCTTTTTCTGACGATGATGGTATAA
TAACATTGTTGGTACTGCCTCAGTAATACTATTAGAAAGTAATTCATGCC
AAACTGTACCACGATGCTAATGAAATTTCTCTTCACGTGAAACGCCCTGT
TTGCCATTCAAAATGAACATTAATTTTCCCTCTTTGTTATCTACTAATTA
ATTTGCTTGCATGGAAAATAATGCGGTTACCATAGCAACTTGATTGCTAG
GAGGTATACAAAACAACGTATTTCTATAGATTCATATGTTTTGATTCCAC
GCCTTATCGAGAATAATATTTGCGCTTTTAGAAGCGTTAGGTCACACGGT
TTCTAAgagattttcaacaaaaaactttttacacttttttcataaGGTAT
CAAAATCTAGCTGCCTACttttagtagagggcattttgtaaaatcgctcg
actgttttgttagaagcacttgttatacatctttggaaagctaa
Run BLAST on NCBI

transcript from alignment at scaffold_200:133947..135090+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051297 ID=TCONS_00051297|Name=TCONS_00051297|organism=Clytia hemisphaerica|type=transcript|length=1144bp|location=Sequence derived from alignment at scaffold_200:133947..135090+ (Clytia hemisphaerica)
ACTATAACGAAATATATTTTGTAGAATTTGACGGCGTGGACGTTCTAAAA
GCAGCCTAACTgactaaatatttcttttttctcagaGAGAGTGTATTTCA
GTTCACGTTGGACAAGCCGGTGTCCAAATCGGAAATGCTTGTTGGGAATT
ATATTGTTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCTTCAGATA
AAACCATTGGAGGGGGAGATGATTCATTCAACACTTTCTTCAGTGAGACT
GGTTCTGGTAAACACGTCCCCAGAGCTGTTTTCATCGATCTTGAACCCTC
AGTTGTTGGTAAGAGCCAAAGTTATTTAATAAACTAATTCTTATTTTTCT
GCTCACTGTATTTTGTTTGGTATAGACACAGCGATATTACAAAGATGTCT
CTCGTAAAGCTTTAAACCCCTTGTCAattaattcttgatatgcgtaagtc
atttttctagcggaaacacccgaaaaaatccgggatttgacccctctctg
ttactaaaaatagaaacacagaggtcaaaatccggcttttttgggtgctt
ccgttaaaaatatgacgtcatcttgacttacgcatatcaagaataagaGA
ATTTAAACCTTAGACGGCATTCCAAACATTTACAATTTGGGACGGGCTTA
AGACTGAAAACATCCGTTTAGATCAGCTTTTTCTGACGATGATGGTATAA
TAACATTGTTGGTACTGCCTCAGTAATACTATTAGAAAGTAATTCATGCC
AAACTGTACCACGATGCTAATGAAATTTCTCTTCACGTGAAACGCCCTGT
TTGCCATTCAAAATGAACATTAATTTTCCCTCTTTGTTATCTACTAATTA
ATTTGCTTGCATGGAAAATAATGCGGTTACCATAGCAACTTGATTGCTAG
GAGGTATACAAAACAACGTATTTCTATAGATTCATATGTTTTGATTCCAC
GCCTTATCGAGAATAATATTTGCGCTTTTAGAAGCGTTAGGTCACACGGT
TTCTAAgagattttcaacaaaaaactttttacacttttttcataaGGTAT
CAAAATCTAGCTGCCTACttttagtagagggcattttgtaaaatcgctcg
actgttttgttagaagcacttgttatacatctttggaaagctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032509XLOC_032509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051297-exon-scaffold_200-1491911889:133947..135090TCONS_00051297-exon-scaffold_200-1491911889:133947..135090Clytia hemisphaericaexon
TCONS_00051297-exon-scaffold_200-1510915933:133947..135090TCONS_00051297-exon-scaffold_200-1510915933:133947..135090Clytia hemisphaericaexon
TCONS_00051297-exon-scaffold_200-1575043694:133947..135090TCONS_00051297-exon-scaffold_200-1575043694:133947..135090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:133947..135090 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07254	1.3549	2.32407	2.33499	3.91199	2.46212	1.60934	1.78862	1.46171	1.48045	0.792619	0.733206	1.24437	1.52977	0.930957	1.04324	1.60476	1.02201	1.72929	2.23211	1.18521	0.907315	0.815256	0.918445	0.635088	0.481034	2.32467	2.62274	1.10352	1.32481
Blast
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BLAST of TCONS_00051297 vs. Swiss-Prot (Human)
Match: TBA3C (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.360e-43
Identity = 70/79 (88.61%), Postives = 77/79 (97.47%), Query Frame = 2 
Query:   86 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGSGKHVPRAVFIDLEPSVVGKSQS 322
            RECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG+GKHVPRAVF+DLEP+VV + ++
Sbjct:    2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRT 80
The following BLAST results are available for this feature:
BLAST of TCONS_00051297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA3C4.360e-4388.61Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
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