TCONS_00051288 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051288
Unique Name	TCONS_00051288
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1796

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_200:109766..120514+

transcript sequence

>TCONS_00051288 ID=TCONS_00051288|Name=TCONS_00051288|organism=Clytia hemisphaerica|type=transcript|length=1796bp
TACAGCACTCAATAATGTCCAAAAACAGTGAGGATACAGTGGCCTCGATA
GAAAACTTGCTGCAAATTATTCGATCAATAAAATGTACAAATGAGGATAA
AACTGATGCATACCTTACATTATTCAGGTTGATCCAGTCAAACAAGCAAG
AATCTATCTCAATCATTACAAAACAAATCAACTCTGTCTTGAATACTGTA
CAGaaaCATATCCAACACAATGAGAGGTCATTGGCTGAAGCGGCAATAAC
ATTTCTTGGTTATTGTCTAGCTATTGAAGAAATCAATTTTGTTTGTAAAG
ATGAATCTCTAAAGAACATCAGCAAAGCACTTTGTCAAATCCTTGAAACT
AATGGAGAGAAAACAGTTATCATAAGAACACTTTGGTGTTTTTGTAACCA
ATCTATGAAAAAGGACATCATTGAGCAATATGTTGAAAGGATTTTGGTTT
TCTTCTCAACTCTCAAAGAGAATGACAAGATAAAGTCAGAAACAATTTAT
AatgaagctctcaaagtcaTCAAAAAATTTTGTGAGCAATGTCCAGACAG
TATGAGAAGTAATCATGACAAATGGGCTCCAGAAATGATTAATTCGCTGA
CAAGTAAAGTAATAAAgAACCAAGAAGTTGGATTTTCTGCTCTTGAAGCA
AGCATCAATGTTTTAATGGTCAATCAAGAATTTGTTTCTTCTTTGTTACA
AAGACTGAATGAAACCGAATTCTCACAAACATTGAATGGCTTATATGATG
AGAACCAAGTGCATGTTTTAAATATTTGGGCTTGTTTACTTCGTATAATT
GGAGAGtcattttttcaattcaacCGTATCAAAGTAACCAATCCTCTGTT
GAAGATAGCTGAAAAGGCATTTGCTTCTAAATCACCAGAGGTTTTGTTGG
CATTAAACAATTTATGGAGATCACTGATTGATTGTGTTTTCACAAGACCa
agtGAATTCTTCAAAAGAATGGAAAAGATATTTCTATTACCTTTGAAAGT
CAGATACAAAAACGAGATTGTAGCCCAGGAAAGTTTGAAAACACAGTGGT
ATTTACTATGTAACATCAATCAGAATGTCAATGATTATATTGAGAAGgCT
ATTTTTGTGGTGTTTGATCTCTACTTACCAACGGCTGATGCAACTCAAGC
AGCTGTCGCAACCAGCACTAACAATAATATGAAAACTCCAGATCGTAGAA
AGTCCATTCACAAATCACCCAAATCTCCTTTCAATGCTCCACCAAAGGTC
AAGTTATTGCTTGCTGAAATGATGTTACAACTGTTGACACCATTGGAAAG
AAGACATCAATTGAAATCTCAACTAGAGTTATTCAAGGGACCTTGTATCG
ACAAGAAAATCCTCATCAAATACTGCAACAAGTTTATTTGCTATCTATCC
GACTTAACAACAAGCTGTACACCTAAACATGagaATTCCATTGCAAATGT
TTGGTATGCTTTTCTGGTGCAATTGAGACAAGATTCTGTGGAGTGTGAAT
CATCTGCCGTTTTAAGAGAGGTTTGGGGACCAATAACGAACAGTTTGAAA
GAAAGAGTTGAACAATGGTCATTGAGTGCGACTTCCATACTTAAATTACT
GCTCTTGATTCCCGAAAGTTTTCTCAAGATGACGGTTGGTAGTGTTGGTT
TAAAGAATGGTTCAGAAGATGAGCAGATTTCTCTGTTTGTGATCCGCCTC
TTGCTTCACAAGAATTTCATCGATCATGAGGGTTATGAATCGGAAAGGTT
TTTCATCTTATTCGAACGTGCCATCGGTGTTGTATTCTCATCAATG

Run BLAST on NCBI

transcript from alignment at scaffold_200:109766..120514+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051288 ID=TCONS_00051288|Name=TCONS_00051288|organism=Clytia hemisphaerica|type=transcript|length=10749bp|location=Sequence derived from alignment at scaffold_200:109766..120514+ (Clytia hemisphaerica)
TACAGCACTCAATAATGTCCAAAAACAGTGAGGATACAGTGGCCTCGATA
GAAAACTTGCTGCAAATTATTCGATCAATAAAATGTACAAATGAGGATAA
AACTGATGCATACCTTACATTATTCAGGTAGGTCTTAAGTTTAGAATCTT
TTAAATAAACCTTTTGCTATACATGATACCATTTTTTTGACTCAATAAAT
TAGCAGTGAAAACATTATGTAATGACTAATAAGCCTCCTTTGAAATGAta
agaattttgttattttttgttttcaggtaTTTGTACACCTTTCTTGACAA
ATTCTCTTTAATTGGTCATATCTTTAGAAAAACTGAGCAGGGtatcaata
aaattttaagaattttaacatTATATACTTCAAAGAAGTTTAAAGTGACC
CATAGCTTTTTGAATTAAGATcgcaattttaccaaaatgaaatccagtaa
cttttcttccacattggctgaaaaaaagtttttcacaaaaaattggaaaa
ggtTGTATAGATACCTTAAATCATTCAATGTCTTGATTTGCAATGCTTTC
TTTCAGGGTGTTTACTACAGATACTAATACTACAAAGGACTTTCTATTTT
CAGGTTGATCCAGTCAAACAAGCAAGAATCTATCTCAATCATTACAAAAC
AAATCAACTCTGTCTTGAATACTGTACAGGTAAAAATCATACACAAACTG
ATTTTGAACTTTCATTGCTTGGTTACttgataaatttgaaaagtttatga
tttttgattttatatgatgattaattttaatttttctagaaaCATATCCA
ACACAATGAGAGGTCATTGGCTGAAGCGGCAATAACATTTCTTGGTTATT
GTCTAGCTATTGAAGAAATCAATTTGTAAGTATCACGCTGCTTTATATCT
AGATATTTTTTGCATTATATGATTCAAAGATATTTCTTTCACTTTGGATT
GTTAATCTTCTGTATTTCAAAATCTCCCCAATTGATTTAAAGATATACAA
AATCAGAATTTAACCATGTCAATAAAATTATGATTGACTTTTAGTACACT
TCTACGTAATCTTAATCATCATAATcaataaaatcctttttttgcaGTGT
TTGTAAAGATGAATCTCTAAAGAACATCAGCAAAGGTAACTACAATAAAT
TAAATGGTAAAAAGGTTCATTTTGATAAGTAACCTATTGTAATATGGTTA
TTGTTTATCATCAATAACTCTGCTACCGCAGTCAGAGGCAACCAGAAGGC
TCTACttttgatagctatctacctgagGGTAGACCACTCTTCTTTCTCCG
TGAATTGCTCCACATACACTCAATAATTCACTTAATTGCTGAGCTCCAAG
CTgagaggtatcaagtaccatttttgttcCAAGTACAAAGTCTTTTGTAT
GAACCAGCTAgtgattgaacccacaaccttacACAcagtagctggatgct
ctacctttgcGCTATGGTAGCTTCTGGTAGCTTATCTTCAATAGTAGAGC
AGCCACATGGCTAAAACTTGGAATAAATTACTTTTTTAGCACTTTGTCAA
ATCCTTGAAACTAATGGAGAGAAAACAGTTATCATAAGAACACTTTGGTG
TTTTTGTAACCAATCTATGAAAAAGGACATCATTGAGCAATATGTAAGGG
actattgtttttttcttttgcttacaGTGAAAAAAGACTTAATAGATTTT
AATAGATCTTATAAAAATTTCTGTCAACAAATGCTCAaccattttcatta
ttttgtccACTTTGATTCAAATAACAGGATTATTAAGTTTTAATTCtttc
caaatttaaaaattagGTTGAAAGGATTTTGGTTTTCTTCTCAACTCTCA
AAGAGAATGACAAGATAAAGTCAGAAACAATTTATAatgaagctctcaaa
gtcaTCAAAAAGTAAGTTGTTTtacttcatttcattttttcagcttTATT
GTACACGAACTAGCATATAGCATATTTTCCCAAAGCCTTGTGGGACTTAT
TCAGTTTTCCTGACTTTAGGTATGGCACTTACTAGAGGGTAGCGCTTATC
TTTCAAAATTTGGGTTTCTAAGTTTCTGAAGCTTTAACCTACTCTATAAA
TTTGATCGATTCATGGATTGACATCCTTGGAGAGTTGGTATTCATTATGA
TGGCCAATAAGATGCTTATAGGAAATACCTCTTTCGGCTTCACTGTctat
acaaaaattatttcaatgcCAAAATAAAGTATATCTTTATAGATTTTGTG
AGCAATGTCCAGACAGTATGAGAAGTAATCATGACAAATGGGCTCCAGAA
ATGATTAATTCGCTGACAAGTAAAGTAATAAAggtaatcaaaataaaaat
accaagccattgttaaagtttgttttgaactaGTAGGCTAATAACTTAAA
AATAATATCTTTGCAAAATTGATTAGTTTTTCCTCATTCAAATTTACACT
TATTCCATtttaaaatcgaaaatgatTGTTATATAATTCATTACATAGCT
CTTAGTATTTTTCAATTTAGAACCAAGAAGTTGGATTTTCTGCTCTTGAA
GCAAGCATCAATGTTTTAATGGTCAATCAAGAATTTGTTTCTTCTTTGTT
ACAAAGACTGAATGAAACCGTAAGTGTTTCCATTGGTCATTACCAAATGG
TGTCCCTGAATTTTGTCATGCATCCTTATTAATTCTTaccatttttccaa
aaaatctctcgactcattcctcaaaagtcaaattttaataTAAATTAGGA
CAGTTTTATTTGAAGAATCGGAAATAAATGCAAATTTTTTTGATCTTCAT
TAATGTTTTACTAAAATGCTTTTCAGGAATTCTCACAAACATTGAATGGC
TTATATGATGAGAACCAAGTGCATGTTTTAAATATTTGGGCTTGTTTACT
TCGTATAATTGGAGAGGTATGGATGACTTAATCTACAACCCCTATAGGGT
CTACATAGCTATGTCCAGGGGGGGCACTGATCTTGATGACCAATGGGGAC
GtaccgctggagtttgaaaagtggaccccaTCAAAACCTTGTCAAAACGA
AAATGTTTGTGTTTTCACCCTGAAATGTggcaaaaatgaccaaaagtaga
taaaaattttaatatttttcttatttccaccctgaaaattgtccaaaata
actaAAAGTCAGCCCTGCCAGATACACATCTTAAAAGTTAGttaatttgg
gaccctgtcagatatctccAGAATCTAAAAAATGGACCCTGACCAGTGGC
ATTTCCCTGTATCCAATTTTGACTAAGTGCCTCCCCTGGGTCCTCAATGT
TATTCAACAGCTTCTTTAAATCCTCAAAATCTCAGCCTCTTTGAGTGTTT
TGCATAATGCAATCCCAAAATCTTTGTTCTAAATCTATGCACGCTAACTT
TTAAGTACTTTGCAACTGCCCACCAAAATGGTCAGTTTGTTTCCTAGaat
tttgctgaaaatattttaaagctaTTGAAAAAACAGTATATATAAAGCTC
TAATAATCCattcaattttattatttatttcttttagtcattttttcaat
tcaacCGTATCAAAGTAACCAATCCTCTGTTGAAGATAGCTGAAAAGGTA
ATAATTTAACTATCTTANaaaagtcaaattttaataTAAATTAGGACAGT
TTTATTTGAAGAATCGGAAATAAATGCAAATTTTTTTGATCTTCATTAAT
GTTTTACTAATGCTTTTCAGGAATTCTCACAAACATTGAATGGCTTATAT
GATGAGAACCAAGTGCATGTTTTAAATGTCTGGGCTTGTTTACTTCGTAT
AATTGGAGAGGTATGGATGACTTAATCTACAACCCCTATAGGGTCTACAT
AGCTATGTCCAGGGGGGGGCACTGATCTTGATGACCAATGGGGACGtacc
gctggagtttgaaaagtggaccccaTCAAAACCTTGTCAAAACGAAAATG
TTTGTGTTTTCACCCTGAAATGTggcaaaaatgaccaaaagtagataaaa
attttaatatttttcttatttccaccctgaaaattgtccaaaataactaA
AAGTCAGCCCTGCCAGATACACATCTTAAAAGTTAGttaatttgggaccc
tgtcagatatctccAGAATCTAAAAAATGGACCCTGACCAGTGGCATTTC
CCTGTATCCAATTTTGACTAAGTGCCTCCCCTGGGTCCTCAATGTTATTC
AACAGCTTCTTAAATCCTCAAAATCTCACCCTCTTTGAGTGTTTTGCATA
ATGCAATCCCAAAATCTTTGTTCTAAATCTCTGCACGCTAACTTTTAAGT
ACTTTGCAACTGCCCACCAAAATGACCAGTTTGTTTCCTAGaattttgct
gaaaatattttaaagctaTTGAAAAAACAGTATATATAAAGCTCTAATAA
TCCATTCAATTTTATTATCTATttcttttagtcattttttcaattcaacC
GTATCAAAGTAACCAATCCTCTGTTGAAGATAGCTGAAAAGGTAATAATT
TAACTATCTTctatatagtaaaaaaatttaaatataccACGAAAGTCATT
AAacaacaaacttcaaaaaaagccTTGGTCATATGTGTAAATTTAACAAG
GAAAACTGACTAATTTACTTTGACATtgtctctactttatttcctacATT
AAATTAATCTAGTCTGGTTCAAATCGAGAAGCATTTTATCTACTTTGacc
tttcattttatttctatGCCCTTTCATTTTTAGGCATTTGCTTCTAAATC
ACCAGAGGTTTTGTTGGCATTAAACAATTTATGGAGATCACTGATTGATT
GTGTTTTCACAAGACCaagtaattgttttttttttacatccaTGGATGCT
TACAACGTCATGGTATAAGAAAACATTCAATGGACAAATCACCCATTTAT
TACTTTCTTATAcatgaacatttttttaaaattttaaaaatcaatggtct
actctttgtctttttgttattttatgctttttttatttctttaggtGAAT
TCTTCAAAAGAATGGAAAAGATATTTCTATTACCTTTGAAAGTAAGATTT
CTTGCCCTATTtcaatatcaaaatattttagcCTTGTTACAAAAAAATGG
AATAAACCTATGATATTCATGTGTGaaccaaaacagaaaaaatagtctac
attacaaaaaagtaatggCCTTTTGGTCTAAGTTGtcagcttttcaaaaa
atgagatTCTGATTCAGACCCCTGCTTTCTTTTCTgtgaaaacaattaaa
agacTGTCAAAAAGTGCTAGATTACTGAGCTATCATAAAATGACTATCTA
TCTACATTCATTCTAGGTCAGATACAAAAACGAGATTGTAGCCCAGGAAA
GTTTGAAAACACAGTGGTATTTACTATGTAACATCAATCAGAATGTCAAT
GATTATATTGAGAAGGTAATCCATGTGCaatattttttctacaaaaatcc
aatgaaacagCAGGGACGGACCACTTTATTTAAGATTATTGATGAATTTA
TCTGAGTGACCTAAAGCTTACAAGCTTTTGATTATACTTTATAATCAAAA
TTACAAATATCTGCTCATCTCATTAATAGCGAATTAAATCACATTTTAAC
CCTAAGAGATTTTTGTTTCTGGTATTTACTATCTTAACAGTACCGCTTCC
CCTTTTCTCAGGGTGTATTAATTCATCTCACCAGATTTAGTTTTCCTCCC
TATTCAGTGAGATCAATGGAATCACTGtccttttaatttgaaaaaatgtg
tcCATGTTGTTTGTTTACGTAGCTCAATGGTAGGTATACGGGGCTATCAA
CAATAACATAtacatttatttcttttcaggCTATTTTTGTGGTGTTTGAT
CTCTACTTACCAACGGCTGATGCAACTCAAGCAGCTGTCGCAACCAGCAC
TAACAATAATATGAAAACTCCAGATCGTAGAAAGTCCATTCACAAATCAC
CCAAATCTCCTTTCAATGCTCCACCAAAGGTCAAGTTATTGCTTGCTGAA
ATGATGTTACAACTGTTGACACCATTGGAAAGAAGACATCAATTGAAATC
TCAACTAGGTAGATTACCCTTAACTCCTTTTTACCAGAGGGACATAGGTT
AGGCATTTTGATGACTGGGAAAATTAAAACTAGtttatgattatttttta
tacCATTACTAgagaaataaatagaatcacaaaatgctcaaaaaacattc
gattgaaATACCAAGAAATACttacaatagacgatatcggctttcgatGA
ANATGACTGGGAAAATTAAAACTAGtttatgattattttttatacCATTA
CTAgagaaataaatagaatcacaaaatgctcaaaaaacattcgattgaaA
TACCAAGAAATACttacaatagacgatatcggatttagataaatgcaatg
cattctggtttctagggactctcaaaggaattataatagattataactcc
tttgagagtccctagaaaccagaatgcattgcatttatcgaaagccgata
tcgtctattgctaCACGATGTTTCATACTGGCGTATTCTTTAGGCAATCG
GTGTATTTTAGATTGTATTTAAATGATTGAAATTTAATTGCCCGAAGATT
GCGTCTGCATGAAACACCGTGCAGCAatttgtaagtttttttttctcaat
ataaCATTAGTAGATTTCATATTTCACTTAGTTAGACTATAATTATCAAG
CCTCAATAGACAAAAACTTCTCCCGGGCTTTGTACAAGTTGTGAATGCTG
AGAAACTGCTTAATCATGTTTCATTTTTAGAGTTATTCAAGGGACCTTGT
ATCGACAAGAAAATCCTCATCAAATACTGCAACAAGTTTATTTGCTATCT
ATCCGACTTAACAACAAGCTGTACACCTAAACATGGTAAGATTGTTATTG
GGCTTCATTAATAAATTAAGTATAAAATTGCTCAAACTAAAAATAAGATT
GAAACTATAATTATGATAAACCTCTAAAAAgttgggaatttaaatttttg
gaaataccTTTTTTAGTTATCCACAGAAAACTTAGATCCTATAAATAATC
CTTTGTGAGACAGGTCTTCACCAGATTTTCTCAGGTTTTTGTTGAATAAA
TTGTTAAAATGTGATGGAATCTGATTGAAATATCTGCAACAGTCACATTC
TTGGCACTGCATTGCTAATAATGcatctttttgtaaaaaaattgacaaaa
gtaaTAAAACATCGAGAAAATCCTAAAAATTGTTCAAACTAGTTGAGGTG
TAGCATCAATTGTGTGTAATTTGGAAACGCATGAAAAAAACGATACACCA
TTGTATTTCCTCATCTTAGTCATAGGACATTGGACCAACCAATCTATAAA
ACCAGTTCAGACTTGTCATCTTTAGCAGGAATTACACCCCTTTTTTGAAT
GAATCGTTTACAAGCAGTTCTGAATTTTGTGTCTTTCCAAATGTATATGA
AAGGGTTGCAACACGAGTTGGATAAAGTAACATATAATGCTGCCAAGTTG
ACATACCTAACAACCTCCTGTTGTACGTTATTATCAGGCAACGTCTTTTG
TATGATAAACATGAATATTGAAGGGACAAAAGCTGCTAAATAAAACCCAA
TCAATATCATTAATTTGTTGACAAGTTTTCTTTCTTCTATGTGTCTTTTC
TTTTCTGCCACCTGATTGGGTATTGTATTGTGTTGAGCGAGGCGTTTTGC
ACTTTGTCGAAATGCTTTCCAAACGAAATAATAGCTGCAACACAGTATTA
TTATGGATATGATAACAACGAAAGGACTGCCAAACATATATATCAAGGGG
TTGATAAATGAAATTATCCCAAAGATCAAAAGAATGAAACAAAAAGACCC
GATAATGGTTTTCATCTTTTGATCTGTCATAATATCATGATAACGGTTCG
ATTTTGTAATGACAGTGTATCTATCATACGCAATGAAAACGACAGAGCAA
GTCGAGCAACCTCCTAACCATATAACAGTTAACGAGTATCCAGCAAGGAC
CTGACAAAACAGTTTCGAATCATTTTTCCGACCATTATTTATCAACCAAA
TTCTCAAAGGAAAACAAACAAAGCCGACTAAGCAATCACTCAAAGCGAGA
GACGTTaagattttgttcgattttgttCTCTGTGAGGGTTGCCAGAggac
aatcaaacaaaatgtGTTCCCCAAAGCTGCCATAATGGCTGATAGAGTAT
AGAATGTAGTTGCAATAATTTGCACTATGTTTGGCAGTTGGAAATAGTTT
CCAAAAAAGCAATCCatcttttttttgttattttcctTGTCCTCTTTTCT
TGGAGAAGGAGgacaaatttttcttcattcgAGGTTTTTAAAAGGCCAAT
GGAATTAATCACTAAATTGTAAACTTTCACACTTTTTTGTTAcaaccaaa
aataatttaatattcAATATTAGCAATATTCGATTTTTTCCAGAATCTAT
TAATTTTATTAAGATTACAATAAAAATCTCTTCTTGAAACAAACGGATGA
AAAAACTTCTATATCGATATCTAATTAGTTCTAGTTAGATGGAAATTAGG
GTTTAATTTCTCCGTTATTACTTATGAATTTTTTGAAGAGAGTGAAACGA
GTGGGAGGACGAGGGAAACTGATGAAgaattgggctgttccattaaaaaa
ccgtacagggggtggacgaaccttttcaagtcaaaaaaattattgagaAT
TGTGTGAATTCCCCCtcgaaaagtgtaaaatctccaaaaatacCCTTGGG
AAAGTTCTTTtgataccttaaagtgagggtagacgaactaaaatcagtct
tcaTCCCCTGGAAACTTTTCTCGGGTTACCCTCTGAAAATGTTCGTCCAc
tccccctgtatggatataaaatggaagccCATTTGTGACAGTATAATTGT
AATTCTTTCTTCATCCCATGATTAAGATTGAAATTTCCCGAGTTCTAATT
CAATTTTCTGATTCAGTGTAATGGTGTGCAAAGTCCGCTCTGCTTAAGGG
AGGGGGTGTTGATTGGAGGCGATAGATATAAATGGTAGATGTTATTATAG
ACCATGAGACACGGAGGAAATCGGTATCGCTTATGTGGCTCAACAATTTC
GGAAAACTTCATAAAGAATGTTGGAAAATTAGATCTCATAAGCATCTAAA
TGTCATGATGTTTTATTTATGAggcaatattttctttttttagagaATTC
CATTGCAAATGTTTGGTATGCTTTTCTGGTGCAATTGAGACAAGATTCTG
TGGAGTGTGGTAAGAAAACTTATCGGTAAAATAATTTTCACCTAGAAATT
GTAGCCATTGTATCAAGTCCATAAGTAAGAAATAACGCGGAAACGAAAAA
CAAACTCTGAAAGCTATAAAGAGAGCAAAATATAAGTTATGAGTTATGGA
ATGCAAAAATGATGtcataaaattccaaatatGACAACTAACTCaggata
actcggttttttaactCAGAAAGAATAACTCTGGAATTCCGCGGGTGTCC
AGATATCGGTATCAGAAATTAACAGGCATTGAATCAATGGAAATGTCCAG
TTATATTGTATTTTCATAATTGCGAAATATAGTAAAAATTTCTCTTTAGA
ATCATCTGCCGTTTTAAGAGAGGTTTGGGGACCAATAACGAACAGTTTGA
AAGAAAGAGTTGAACAATGGTCATTGAGTGCGACTTCCATACTTGTAAGT
TCTTCACTTCCCAATTACAGTACGTTTTCTACTTTGGGGTATACATGTAA
AAGAACTTCAGTTTTTGACAATAGCGTCACATCCTTGGCacttttattga
tttattttatattttatgaagGAAACGTATTTAAGATATTAAAAAGGCAC
ATAACAGTACtggcgaaatttgtaaaaaaactgtatgcagcggatacaaa
atcaaaacaaatgtgacatgtcaaaataaaaaatcaaaccaaatatggct
aattttgattgttcaatcgttttacaagtttattttggacacgtgattct
aattgttctctttaatgacacgtggttcgcgcaatgtttacattttacaa
cttttatgtccctttaaagtatattttgatttttttgtgggttttttttt
taattcttatttTCCAATTGATTTCTGTCTAACCATACGGGCCAAAGGTC
AGTTTGTGGAATGTCGTTGTTTTACTTTTTACTAACTATATCGTATACTC
TTAGATTGTCTTTACTTTTAGAAATTACTGCTCTTGATTCCCGAAAGTTT
TCTCAAGATGACGGTTGGTAGTGTTGGTTTAAAGAATGGTTCAGAAGATG
AGCAGATTTCTCTGTTTGTGATCCGCCTCTTGCTTCACAAGAATTTCATC
GATCATGAGGGTTATGAATCGGAAAGGTTTGATTTGATGTCCCTTATATG
TACCCTTACAACTTTCCTATGCaactttttcaattattttaatgCGGGTA
AAAAGAGTACGACAATTTATTAACGCGAAAGGCAATTACTGTGGCTCACA
TTTTGTCATCGTAGCGTTTTCTAATAGCGAAGGCAGGGTTAagatttata
atatttttatattttctcaaaatttcaatccaaactttttaacttttttt
cgacACATCTAGTAAATTGCTGGACTATCCCTGCAACATATCGCAACTTA
ATAATACTTGTTATTTTTATGGAACTTTTTACGTGTTTCGTTTCCTTCAG
GTTTTTCATCTTATTCGAACGTGCCATCGGTGTTGTATTCTCATCAATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032508	XLOC_032508	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_200	supercontig	scaffold_200:109766..120514 +

Expression

No biomaterial libraries express this feature.

Blast

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BLAST of TCONS_00051288 vs. Swiss-Prot (Human)
Match: RIF1 (Telomere-associated protein RIF1 OS=Homo sapiens GN=RIF1 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 4.499e-30
Identity = 157/624 (25.16%), Postives = 272/624 (43.59%), Query Frame = 3

Query:   57 LLQIIRSIKCTNEDKTDAYLTLF-RLIQSNKQESISIITKQINSVLNTVQKHIQHNERSLAEAAITFLGYCLAIEEINFVCKDESLKNISKALCQILET--NGEKTVIIRTLWCFCNQSMKKDIIEQYVERILVFFSTLKENDKIKSETIYNEALKVIKKFCEQCPDSMRSNHDKWAPEMINSLTSKVIKNQEVGFSALEASINVLMVNQEFVSSLLQRLNETEFSQTLNGLY-DENQVHVLNIWACLLRIIGESFFQFNRIKVTNPLLKIAEKAFASKSPEVLLALNNLWRSLIDCVFTRPSEF--FKRMEKIFLLPL-KVRYKNEIVAQESLKTQWYLLCNINQNVNDYIEKAIFVVFDLYL-----PTADATQAAVATSTNNNMKTPDRRKSIHKSPKSPFNAP--PKVKXXXXXXXXXXXXXXERRHQLKSQLELFKGPCIDKKILIKYCNKFICYLSDL------TTSCTPKHENSIANVWYAFLVQLRQDSVECESSAVLREVWGPITNSLKERVEQWXXXXXXXXXXXXXXXXXXXKMTVGSV------------GLKN---GSEDEQI----------SLFVIRLLLHKNFIDHEGYESERFFILFERAIGVVFSS 1793
            LL+ +     ++  +TDAYLTL  R+     +E I+ I K++  +   ++ HI      L+ AA+  LG+CL   +I     + S  N  + L ++ +T  N +K V  R LW    Q+   +++ + V  I+     L    +  S  +  EAL VI +  EQ P  M     +WA  +I  +     K    G +ALE  + +L+  Q+ ++S+ ++L  T+    L  L+  +N+ +VL +W   ++++G +  +       N LL++ E  F S +P +       W+SLID     P      KR+ K+ + PL  +  + E +A   L+  WYLL  +  ++    E+    +    +      +       VATS   N  TP     +HK   SP+ AP  P++ L      +  +  ++    L+  L    GP   + +     NK +  L  L      + S   KH N++    +   V + +D+ +   SA+ +E+   +  S+ E   +     + +L LLL   ES +K  V  V            GL     GS   Q+          +LF+I+L+ + NF++  G   ERFF+  E  +G V S 
Sbjct:   12 LLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSELSSAALQALGFCLYNPKI---TSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDFEALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKNETYVLKLWPLFVKLLGRTLHRSGSF--INSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPDILCSAKRL-KLLMQPLSSIHVRTETLALTKLEVWWYLLMRLGPHLPANFEQVCVPLIQSTISIDSNASPQGNSCHVATSPGLNPMTP-----VHKGASSPYGAPGTPRMNLSSNLGGMATIPSIQLLG-LEMLLHFLLGP---EALSFAKQNKLVLSLEPLEHPLISSPSFFSKHANTLITAVHDSFVAVGKDAPDVVVSAIWKELIS-LVKSVTESGNKKEKPGSEVLTLLLKSLESIVKSEVFPVSKTLVLMEITIKGLPQKVLGSPAYQVANMDILNGTPALFLIQLIFN-NFLEC-GVSDERFFLSLESLVGCVLSG 617

The following BLAST results are available for this feature:

BLAST of TCONS_00051288 vs. Swiss-Prot (Human)

BLAST of TCONS_00051288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RIF1	4.499e-30	25.16	Telomere-associated protein RIF1 OS=Homo sapiens G...	[more]

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TCONS_00051288 (transcript) - C. hemisphaerica