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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051284 ID=TCONS_00051284|Name=TCONS_00051284|organism=Clytia hemisphaerica|type=transcript|length=3172bp
tctcgaaatcttttgtgatatttttgttattttctggCATTTCTTTGTGT
TATTTGGTTTGAATATTATGAACGGTCGTGTGTTGTTAACGTTGGCCCTT
TGCGGTCTTATCCTTTTCGTCCAATTGGACGCAAAAGCCATCAAGCACAA
GAAACACAAGAAAACACACATCAAACACAAAAAAGCGGCCCTCCCACAAG
ACCCACCAGCACCTGAAGGAGATGCCCCAGCCCCAGATGATGCCGCCGCC
CCACCAGCCGGAGATGCTCCACCAGCAGGAGGCGCCCCACCAGCAGCCGG
TGCTGATGATGAAGATGATGCTGCTGCTCCACCCGCAGCTGCCCCAAAAC
CAGGTGCAGGAGGTGCTCCACAACAACCAGGACAACAACCAGGACAACCT
CCAATCAACCCAAATGATTTGGACGGTAACGGTGTTGCTGACAATCTTGA
GCAACCACAACAACCTCTCCCAGGACAACCACCAGCACCTGGTGCACCTC
CACCagctgaagaagaagaagaaggcaGTGCCAGTGGCGCCGCTCCACCA
CCCGCAAATCCAGTGGCCCCTTCATTACGTTTGTGCCCTGGTGATTGCGA
CCCACAATGTGCTCCAGCTTGCCATGACTTTTGTTGCAGTGGACATCCGG
CCTTAAATAGATACAACGGACCACCTCCATGTGCCGAGCCCCCATGTATG
CCTCCTATGCCACCCCCAATGCCAATGGCTGCACCCTGTGCCCAACCCCC
TTGCGCCCCTGCAATGCCAATGGCTGCACCTTGTGCCCAACCCCCTTGCG
CTCCACCAATGCCAATGGCTGCACCTTGTGCCCAACCCCCTTGCGCCCCA
CCAATGCCAATGGCTGCACCTTGTGCCCAACCCCCTTGCGCCCCACCGAT
GCCAATGGCTGCACCTTGTGCCCAACCACCATGCGCTCCAGCCATGCCTG
CTGCTATGCCATGCGCCCAACCTCCTTGTATGCCAGCATCAGCTCCTATG
TGTCAACCACCCCCTAGTTGCATGCCAGCTGCCGCCCCTTCTGTGTGTGC
ACCAGGTCTTGTTCGATGTATGCCTGCTCAACCAGCAGCAGGATGCAACC
TCCCACCACAATGCCCTCAAGCCACCCCTATGCCACAGTGTCTCCCTCCT
GGTGCTTGTAGTGCTGAAGAGATCCCAACCCCAACAGAAAAACCTAAGCA
AGAAAATTTGACCATGCATGAAATGATCATGAATATGCCACTACCATGTG
CTCAACCTCCATGCATGCCTGCTGCTATGCCATGCGCCCAGCCGCCTTGT
ATGCAAGCCCCTATGGCTGCACCCTGTGCCCAACCTCCCTGTGCTGCTGC
CCCTATGCCAATGTCTGCTGCTTGTGCCCAACCCCCATGTGCTTCTGCTC
CAATGCCAATGTCTGCTCCATGCGCCCAGCCTCCTTGTGCTCCAGCCATG
CAAATGGCTGCACCCTGCGCACGACCACCTTGTGCCCCTGCAATGCCTGC
TGCTATGCCATGTGCCCAGCCTCCCTGTGCTGCTGCCCCAATGCCAATGG
CCGCCCCCTGCGCCCAACCACCTTGTGCCCCTGCAATGCCTGCTGCTATG
CCTTGTGCTCAGCCTCCATGTGCTCCACCCATGGCAGCCACCCCAGCCTG
CGCTAAACCACCCTGCATGGCTCAACCTTCATGTGCTTCTTGTCGTCGCC
ATTGTGCTCCTCATTGTCCCAAAAGATGCTGTAAAAAATCCACCAAGAAA
tctcacaaaaacaaacattgaatTCCTTAACATCCTTTGAACTTAGTGTA
GATAGACAGCCTTCCTCATTATGAGATCGACATTTTTAGGATTTGATGAG
CCTCCACCACaaacaccaccaccaccaccttCGAAATGTAACCAGTGTGA
TCCTTCTGATAGTAGTTGCCAATCTGACCCATCTTGTGCCCAACAACAGG
GTGCCATGTGCACCCCCCAACCTGGTTGTGCCCCTTCCTTCACTCCAGGG
TGCCTTAACTGCATGCCACAATACCCATCAGGATGTGCTGCCTTACCTCC
AATGTGTTTCCCTCAAATGATGCCCCCTCCTCCCCCTCCTCCTTGTCCTG
CCCCTGGTTCCTGCACACCAGCAGAACTTGAAGCAAGCAAAATGCCGACT
CCTCCTCCAGTCCCTGTGCAATTCCAAAGTCCAGATTCATTCCTTGTCAC
ATGTCCATTGCCGCCCTGCATGCAACAACAGATGCCTTGTGGTCAAGCTG
GAGCTGCCCCTTGTCCCGGAGCTAAGTCCCCTGCGTGTCCTTCCGGTTGT
GGAAGTACTTGTGGCCCAAAATGTCATCGGCGTTGCTGtaaaaagcataa
aaaatcaaccaagaAAACCTCAAAACACAAGCGGAAACAACATTAATTCT
TTTTCTACCATTTTATAAAAACCCTCTAAAACACATAtaccaaacaaaca
aaaacattctcACAATcacatcaaaaaaactttttcttcattAAATAGGA
ATGGCCCCACCTCCTCCACCTCCACCTAAACCAGCACCAAAACCTGTCTG
CGATGAATGTCCACCAGCCGGTGCTCCACCACCATTAGACTGTATGCCTG
CCCCAGCCTGTGCCCCAGTTGCTGACCCATGTATGCCAGCACCGGGATGT
GCCCCAATGGCCCCACCAATGGGATGCATGGGAGCCGCTTGTGCCCCACA
AATGCCCGCCGGATGCGCCCCAATGCCAGCCGGATGTGCCCCACCAATGC
CAGCCATGCCCGCTATGCCCGCCCCATGTGCCCCACAACCAGGATGTGCC
CCAATGGCTCCACCAGTTGGATGTCAAGGTGCCGCCTGTGCCCCACAAAT
GCCCGCCGGATGTGCCCCAATGGCAGCCGGATGTGCCCCACCAATGCCCA
TGCCAATGTCCCCCTGTGGAATGTGTAAGAAACACTGCACAAAAGCATGT
CAAGCCAAGAAATGCTGCAAAAAATCCGCAAAGACCAAGAAGGCTAAGAA
ACATCATTAAATTCTCACTCGCTTATCTATGATGCCAACTTCAACCAAAC
ACAATGTGGAATGTCAACCTTTTTTTACCATGATATAGAGTTTTAaacaa
tataattatttttttgttaaaagtaaatattttttttctgcaagaaagtt
gatttgaattttaatacatatg Run BLAST on NCBI transcript from alignment at scaffold_200:86948..92476+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051284 ID=TCONS_00051284|Name=TCONS_00051284|organism=Clytia hemisphaerica|type=transcript|length=5529bp|location=Sequence derived from alignment at scaffold_200:86948..92476+ (Clytia hemisphaerica)
tctcgaaatcttttgtgatatttttgttattttctggCATTTCTTTGTGT
TATTTGGTTTGAATATTGTAAGTGTATTTGGCGAAAAAGCATATCCAATG
AATGTAGAATACACTGGacagtttaaagtttataaaacttgctttttgtt
tgaaattgtcTGATTGCAACCAAGAATATGAAAAAGTTTCAGCCAGAATT
ACCAGAAAACTatctaaatttattttgtgtttGGCAAATATTTTATGGAG
GTGAAATTTAAAATGGTCTTGTTCTATTCTCCTACTTCCCAAGAGCaatg
aaattttgatattcttggTTTTGCAAGCATCATCGTTAACCCTCTATTAC
TTGTTAAGATCCTAGTATCTTATTTTAATGTCTTCTTCGTTTATCTCTAG
ATGAACGGTCGTGTGTTGTTAACGTTGGCCCTTTGCGGTCTTATCCTTTT
CGTCCAATTGGACGCAAAAGCCATCAAGCACAAGAAACACAAGAAAACAC
ACATCAAACACAAAAAAGCGGGTAAGTTTCATTGCCATCTATCTCAAATA
GCACTTTTAAAATCTGATATCACTAGTCTGAGTGGATTGCTTTTTGTCAA
TGCTCTAAATACCCTTTTTCGCTTATTAGGGCTCAGTTTTCTAATTTATG
TATTTTCTATTAACAGCCCTCCCACAAGACCCACCAGCACCTGAAGGAGA
TGCCCCAGCCCCAGATGATGCCGCCGCCCCACCAGCCGGAGATGCTCCAC
CAGCAGGAGGCGCCCCACCAGCAGCCGGTGCTGATGATGAAGATGATGCT
GCTGCTCCACCCGCAGCTGCCCCAAAACCAGGTGCAGGAGGTGCTCCACA
ACAACCAGGACAACAACCAGGACAACCTCCAATCAACCCAAATGATTTGG
ACGGTAACGGTGTTGCTGACAATCTTGAGCAACCACAACAACCTCTCCCA
GGACAACCACCAGCACCTGGTGCACCTCCACCagctgaagaagaagaaga
aggcaGTGCCAGTGGTAAGTCTCCCTTAAATTATCATCATCACCTTTATT
GAAGTTGACTATCATTAGTGGGATCTTTTACGTCTCTTTGTGGGAGATTT
GAAGTCAGAGCGATAAAGTTGGTCagcaaataaatcaaaattcgGAAGCT
TCGCGTAATACAAGTTAAACATTTCAAGTGCACATTTTCCACCTCGCTAA
AGTTTGTACTCACCTCTACGGCCCATAAGGCTTGAATCAGTGTGCTGGCT
AACATTTGCTCTGACTTCTCATCTCGTCGATAATCTATTATGATTAAAAT
TATCATGCATGAGGGTATAGATAAAGCACGGTTCTTTATTCTTATTATCA
TTTTCTTAAAACACGTAGTAATTAAATCTAACTTGAAGGTTAAGCCATGC
AGGTTGAGCCATGAAGGTTGTAGAACTAGTTTAAGGATAGTAGAGTTTTT
CCTAGTCCTCTGAAATGCCCTATCGTCTGGTATTCTTTGGATTAAAGTTG
GTTCAAGCCAGAATAAATAAAAAGTCAAGGGTAATTTTAGAGGACTGGGG
ATAATTCATGCACATCATCTTTCATGATTATTTCTGTAAGTGTCtaattt
atttctttaaaaaagtaaaTGCAGTGAAACCAAAAGAAAACGTAAAATTT
AATACAAGATTATTGATTCTCAATCTGTCTCAATACAAGTAGAAAATGAA
TTTATCGGGTTAGAATATTTCAGAGTGGgtaaacctttttaaaattttca
gtggTTTTCATTGCATTTACCTAAAGAAATTCGAATTCACAAAACTTGAA
TAAAAGTTAAGCATAGCAAAGTGTAGAAAATTAAGTTGAAAAGATTCCCT
TTGAAAAACcttgtgaaatttttaaaaactcaataaaacaataatacaat
gtatagcaatgtgccctcccggttattaccggGAACAATAATAAACAAAC
TTTGAAAGCTTgaaactacaatcatggacaaaatatgaGACAAGGGGATT
TCtttgcgaaattttaaacaccacagatgatttttaagcgcgttaaatAA
CAGTTGGAAAGTACAGTTTTAACTGTGAGTTTTAACAAAAGACTctggat
ctcaggatttaaaagctcgaatttgctccaataaggcttggatTATAGAA
ACCATCGAACCACTCCAGAATCGAAAGAtacaatgaaagaaagtggaagt
gctaaaatagcaattctcgctNCAAACCAAGCCAGCGGATCGAAATATTC
AACGAAAGAAAgcggaagtgctaaaatagcaattctcgtcagaactttaa
attctgaaaaacgttaaaatacactaaaatctcaatatatttcgaccatg
attgtagtacgTAAGAGAAACGAGCAATatctaaaagaaattttcttttt
tgctgtAATAACATTTTTGCACGAACCAGACCAAAAAATGACTAGATTTC
TGATAGTATGTCGAGTTTAAAAAATGCATGTCTTTTTGCCCTTATCAGAT
GCTtaacttttattcttttttgttGATGTCCATATGAAAAGTGAATGGCT
AATATCGAAAATCGAAgttgtcttttttttattttcttaagtTCACTGTC
CCCACCATAATACCTATCGATGTGAGAATGTTTTTAGTTGTTATGCCATG
CGCGACACGAAATCGTCCCTTGAAATTAGTCATTTATTTTTCACCCTTAA
AGCACCCCTGTGATAAAGATTTAATGTTGTTTCCCTGGGTCATTTGGGGG
AATTAAAAACACCcgttttgaaaagataaaacCTCCTTAGTATCTTTCAC
TTTTGTTTCTAAAACTACTGAGACCATGACCAGTAAAATACATACATACA
CACAAACTGACTGACTGAATGAAACGGTCCTTCCTATATCTAGGCGCCGC
TCCACCACCCGCAAATCCAGTGGCCCCTTCATTACGTTTGTGCCCTGGTG
ATTGCGACCCACAATGTGCTCCAGCTTGCCATGACTTTTGTTGCAGTGGA
CATCCGGCCTTAAATAGATACAACGGACCACCTCCATGTGCCGAGCCCCC
ATGTATGCCTCCTATGCCACCCCCAATGCCAATGGCTGCACCCTGTGCCC
AACCCCCTTGCGCCCCTGCAATGCCAATGGCTGCACCTTGTGCCCAACCC
CCTTGCGCTCCACCAATGCCAATGGCTGCACCTTGTGCCCAACCCCCTTG
CGCCCCACCAATGCCAATGGCTGCACCTTGTGCCCAACCCCCTTGCGCCC
CACCGATGCCAATGGCTGCACCTTGTGCCCAACCACCATGCGCTCCAGCC
ATGCCTGCTGCTATGCCATGCGCCCAACCTCCTTGTATGCCAGCATCAGC
TCCTATGTGTCAACCACCCCCTAGTTGCATGCCAGCTGCCGCCCCTTCTG
TGTGTGCACCAGGTCTTGTTCGATGTATGCCTGCTCAACCAGCAGCAGGA
TGCAACCTCCCACCACAATGCCCTCAAGCCACCCCTATGCCACAGTGTCT
CCCTCCTGGTGCTTGTAGTGCTGAAGAGATCCCAACCCCAACAGAAAAAC
CTAAGCAAGAAAATTTGACCATGCATGAAATGATCATGAATATGCCACTA
CCATGTGCTCAACCTCCATGCATGCCTGCTGCTATGCCATGCGCCCAGCC
GCCTTGTATGCAAGCCCCTATGGCTGCACCCTGTGCCCAACCTCCCTGTG
CTGCTGCCCCTATGCCAATGTCTGCTGCTTGTGCCCAACCCCCATGTGCT
TCTGCTCCAATGCCAATGTCTGCTCCATGCGCCCAGCCTCCTTGTGCTCC
AGCCATGCAAATGGCTGCACCCTGCGCACGACCACCTTGTGCCCCTGCAA
TGCCTGCTGCTATGCCATGTGCCCAGCCTCCCTGTGCTGCTGCCCCAATG
CCAATGGCCGCCCCCTGCGCCCAACCACCTTGTGCCCCTGCAATGCCTGC
TGCTATGCCTTGTGCTCAGCCTCCATGTGCTCCACCCATGGCAGCCACCC
CAGCCTGCGCTAAACCACCCTGCATGGCTCAACCTTCATGTGCTTCTTGT
CGTCGCCATTGTGCTCCTCATTGTCCCAAAAGATGCTGTAAAAAATCCAC
CAAGAAAtctcacaaaaacaaacattgaatTCCTTAACATCCTTTGAACT
TAGTGTAGATAGACAGCCTTCCTCATTATGAGATCGACATTTTTAGGATT
TGATGAGCCTCCACCACaaacaccaccaccaccaccttCGAAATGTAACC
AGTGTGATCCTTCTGATAGTAGTTGCCAATCTGACCCATCTTGTGCCCAA
CAACAGGGTGCCATGTGCACCCCCCAACCTGGTTGTGCCCCTTCCTTCAC
TCCAGGGTGCCTTAACTGCATGCCACAATACCCATCAGGATGTGCTGCCT
TACCTCCAATGTGTTTCCCTCAAATGATGCCCCCTCCTCCCCCTCCTCCT
TGTCCTGCCCCTGGTTCCTGCACACCAGCAGAACTTGAAGCAAGCAAAAT
GCCGACTCCTCCTCCAGTCCCTGTGCAATTCCAAAGTCCAGATTCATTCC
TTGTCACATGTCCATTGCCGCCCTGCATGCAACAACAGATGCCTTGTGGT
CAAGCTGGAGCTGCCCCTTGTCCCGGAGCTAAGTCCCCTGCGTGTCCTTC
CGGTTGTGGAAGTACTTGTGGCCCAAAATGTCATCGGCGTTGCTGtaaaa
agcataaaaaatcaaccaagaAAACCTCAAAACACAAGCGGAAACAACAT
TAATTCTTTTTCTACCATTTTATAAAAACCCTCTAAAACACATAtaccaa
acaaacaaaaacattctcACAATcacatcaaaaaaactttttcttcattA
AATAGGAATGGCCCCACCTCCTCCACCTCCACCTAAACCAGCACCAAAAC
CTGTCTGCGATGAATGTCCACCAGCCGGTGCTCCACCACCATTAGACTGT
ATGCCTGCCCCAGCCTGTGCCCCAGTTGCTGACCCATGTATGCCAGCACC
GGGATGTGCCCCAATGGCCCCACCAATGGGATGCATGGGAGCCGCTTGTG
CCCCACAAATGCCCGCCGGATGCGCCCCAATGCCAGCCGGATGTGCCCCA
CCAATGCCAGCCATGCCCGCTATGCCCGCCCCATGTGCCCCACAACCAGG
ATGTGCCCCAATGGCTCCACCAGTTGGATGTCAAGGTGCCGCCTGTGCCC
CACAAATGCCCGCCGGATGTGCCCCAATGGCAGCCGGATGTGCCCCACCA
ATGCCCATGCCAATGTCCCCCTGTGGAATGTGTAAGAAACACTGCACAAA
AGCATGTCAAGCCAAGAAATGCTGCAAAAAATCCGCAAAGACCAAGAAGG
CTAAGAAACATCATTAAATTCTCACTCGCTTATCTATGATGCCAACTTCA
ACCAAACACAATGTGGAATGTCAACCTTTTTTTACCATGATATAGAGTTT
TAaacaatataattatttttttgttaaaagtaaatattttttttctgcaa
gaaagttgatttgaattttaatacatatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00051284-exon-scaffold_200-1491911889:86948..87014 | TCONS_00051284-exon-scaffold_200-1491911889:86948..87014 | Clytia hemisphaerica | exon |
| TCONS_00051284-exon-scaffold_200-1510915933:86948..87014 | TCONS_00051284-exon-scaffold_200-1510915933:86948..87014 | Clytia hemisphaerica | exon |
| TCONS_00051284-exon-scaffold_200-1575043694:86948..87014 | TCONS_00051284-exon-scaffold_200-1575043694:86948..87014 | Clytia hemisphaerica | exon |
| TCONS_00051284-exon-scaffold_200-1491911889:87348..87468 | TCONS_00051284-exon-scaffold_200-1491911889:87348..87468 | Clytia hemisphaerica | exon |
| TCONS_00051284-exon-scaffold_200-1510915933:87348..87468 | TCONS_00051284-exon-scaffold_200-1510915933:87348..87468 | Clytia hemisphaerica | exon |
| TCONS_00051284-exon-scaffold_200-1575043694:87348..87468 | TCONS_00051284-exon-scaffold_200-1575043694:87348..87468 | Clytia hemisphaerica | exon |
| TCONS_00051284-exon-scaffold_200-1491911889:87614..87961 | TCONS_00051284-exon-scaffold_200-1491911889:87614..87961 | Clytia hemisphaerica | exon |
| TCONS_00051284-exon-scaffold_200-1510915933:87614..87961 | TCONS_00051284-exon-scaffold_200-1510915933:87614..87961 | Clytia hemisphaerica | exon |
| TCONS_00051284-exon-scaffold_200-1575043694:87614..87961 | TCONS_00051284-exon-scaffold_200-1575043694:87614..87961 | Clytia hemisphaerica | exon |
| TCONS_00051284-exon-scaffold_200-1491911889:89841..92476 | TCONS_00051284-exon-scaffold_200-1491911889:89841..92476 | Clytia hemisphaerica | exon |
| TCONS_00051284-exon-scaffold_200-1510915933:89841..92476 | TCONS_00051284-exon-scaffold_200-1510915933:89841..92476 | Clytia hemisphaerica | exon |
| TCONS_00051284-exon-scaffold_200-1575043694:89841..92476 | TCONS_00051284-exon-scaffold_200-1575043694:89841..92476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:86948..92476 + |
Blast
The following BLAST results are available for this feature:
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