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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051283 ID=TCONS_00051283|Name=TCONS_00051283|organism=Clytia hemisphaerica|type=transcript|length=1218bp
taaatatttctcgaaatcttttgtgatatttttgttattttctggCATTT
CTTTGTGTTATTTGGTTTGAATATTATGAACGGTCGTGTGTTGTTAACGT
TGGCCCTTTGCGGTCTTATCCTTTTCGTCCAATTGGACGCAAAAGCCATC
AAGCACAAGAAACACAAGAAAACACACATCAAACACAAAAAAGCGGCCCT
CCCACAAGACCCACCAGCACCTGAAGGAGATGCCCCAGCCCCAGATGATG
CCGCCGCCCCACCAGCCGGAGATGCTCCACCAGCAGGAGGCGCCCCACCA
GCAGCCGGTGCTGATGATGAAGATGATGCTGCTGCTCCACCCGCAGCTGC
CCCAAAACCAGGTGCAGGAGGTGCTCCACAACAACCAGGACAACAACCAG
GACAACCTCCAATCAACCCAAATGATTTGGACGGTAACGGTGTTGCTGAC
AATCTTGAGCAACCACAACAACCTCTCCCAGGACAACCACCAGCACCTGG
TGCACCTCCACCagctgaagaagaagaagaaggcaGTGCCAGTGGAATGG
CCCCACCTCCTCCACCTCCACCTAAACCAGCACCAAAACCTGTCTGCGAT
GAATGTCCACCAGCCGGTGCTCCACCACCATTAGACTGTATGCCTGCCCC
AGCCTGTGCCCCAGTTGCTGACCCATGTATGCCAGCACCGGGATGTGCCC
CAATGGCCCCACCAATGGGATGCATGGGAGCCGCTTGTGCCCCACAAATG
CCCGCCGGATGCGCCCCAATGCCAGCCGGATGTGCCCCACCAATGCCAGC
CATGCCCGCTATGCCCGCCCCATGTGCCCCACAACCAGGATGTGCCCCAA
TGGCTCCACCAGTTGGATGTCAAGGTGCCGCCTGTGCCCCACAAATGCCC
GCCGGATGTGCCCCAATGGCAGCCGGATGTGCCCCACCAATGCCCATGCC
AATGTCCCCCTGTGGAATGTGTAAGAAACACTGCACAAAAGCATGTCAAG
CCAAGAAATGCTGCAAAAAATCCGCAAAGACCAAGAAGGCTAAGAAACAT
CATTAAATTCTCACTCGCTTATCTATGATGCCAACTTCAACCAAACACAA
TGTGGAATGTCAACCTTTTTTTACCATGATATAGAGTTTTAaacaatata
attatttttttgttaaaagtaaatattttttttctgcaagaaagttgatt
tgaattttaatacatatg Run BLAST on NCBI transcript from alignment at scaffold_200:86940..92476+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051283 ID=TCONS_00051283|Name=TCONS_00051283|organism=Clytia hemisphaerica|type=transcript|length=5537bp|location=Sequence derived from alignment at scaffold_200:86940..92476+ (Clytia hemisphaerica)
taaatatttctcgaaatcttttgtgatatttttgttattttctggCATTT
CTTTGTGTTATTTGGTTTGAATATTGTAAGTGTATTTGGCGAAAAAGCAT
ATCCAATGAATGTAGAATACACTGGacagtttaaagtttataaaacttgc
tttttgtttgaaattgtcTGATTGCAACCAAGAATATGAAAAAGTTTCAG
CCAGAATTACCAGAAAACTatctaaatttattttgtgtttGGCAAATATT
TTATGGAGGTGAAATTTAAAATGGTCTTGTTCTATTCTCCTACTTCCCAA
GAGCaatgaaattttgatattcttggTTTTGCAAGCATCATCGTTAACCC
TCTATTACTTGTTAAGATCCTAGTATCTTATTTTAATGTCTTCTTCGTTT
ATCTCTAGATGAACGGTCGTGTGTTGTTAACGTTGGCCCTTTGCGGTCTT
ATCCTTTTCGTCCAATTGGACGCAAAAGCCATCAAGCACAAGAAACACAA
GAAAACACACATCAAACACAAAAAAGCGGGTAAGTTTCATTGCCATCTAT
CTCAAATAGCACTTTTAAAATCTGATATCACTAGTCTGAGTGGATTGCTT
TTTGTCAATGCTCTAAATACCCTTTTTCGCTTATTAGGGCTCAGTTTTCT
AATTTATGTATTTTCTATTAACAGCCCTCCCACAAGACCCACCAGCACCT
GAAGGAGATGCCCCAGCCCCAGATGATGCCGCCGCCCCACCAGCCGGAGA
TGCTCCACCAGCAGGAGGCGCCCCACCAGCAGCCGGTGCTGATGATGAAG
ATGATGCTGCTGCTCCACCCGCAGCTGCCCCAAAACCAGGTGCAGGAGGT
GCTCCACAACAACCAGGACAACAACCAGGACAACCTCCAATCAACCCAAA
TGATTTGGACGGTAACGGTGTTGCTGACAATCTTGAGCAACCACAACAAC
CTCTCCCAGGACAACCACCAGCACCTGGTGCACCTCCACCagctgaagaa
gaagaagaaggcaGTGCCAGTGGTAAGTCTCCCTTAAATTATCATCATCA
CCTTTATTGAAGTTGACTATCATTAGTGGGATCTTTTACGTCTCTTTGTG
GGAGATTTGAAGTCAGAGCGATAAAGTTGGTCagcaaataaatcaaaatt
cgGAAGCTTCGCGTAATACAAGTTAAACATTTCAAGTGCACATTTTCCAC
CTCGCTAAAGTTTGTACTCACCTCTACGGCCCATAAGGCTTGAATCAGTG
TGCTGGCTAACATTTGCTCTGACTTCTCATCTCGTCGATAATCTATTATG
ATTAAAATTATCATGCATGAGGGTATAGATAAAGCACGGTTCTTTATTCT
TATTATCATTTTCTTAAAACACGTAGTAATTAAATCTAACTTGAAGGTTA
AGCCATGCAGGTTGAGCCATGAAGGTTGTAGAACTAGTTTAAGGATAGTA
GAGTTTTTCCTAGTCCTCTGAAATGCCCTATCGTCTGGTATTCTTTGGAT
TAAAGTTGGTTCAAGCCAGAATAAATAAAAAGTCAAGGGTAATTTTAGAG
GACTGGGGATAATTCATGCACATCATCTTTCATGATTATTTCTGTAAGTG
TCtaatttatttctttaaaaaagtaaaTGCAGTGAAACCAAAAGAAAACG
TAAAATTTAATACAAGATTATTGATTCTCAATCTGTCTCAATACAAGTAG
AAAATGAATTTATCGGGTTAGAATATTTCAGAGTGGgtaaacctttttaa
aattttcagtggTTTTCATTGCATTTACCTAAAGAAATTCGAATTCACAA
AACTTGAATAAAAGTTAAGCATAGCAAAGTGTAGAAAATTAAGTTGAAAA
GATTCCCTTTGAAAAACcttgtgaaatttttaaaaactcaataaaacaat
aatacaatgtatagcaatgtgccctcccggttattaccggGAACAATAAT
AAACAAACTTTGAAAGCTTgaaactacaatcatggacaaaatatgaGACA
AGGGGATTTCtttgcgaaattttaaacaccacagatgatttttaagcgcg
ttaaatAACAGTTGGAAAGTACAGTTTTAACTGTGAGTTTTAACAAAAGA
CTctggatctcaggatttaaaagctcgaatttgctccaataaggcttgga
tTATAGAAACCATCGAACCACTCCAGAATCGAAAGAtacaatgaaagaaa
gtggaagtgctaaaatagcaattctcgctNCAAACCAAGCCAGCGGATCG
AAATATTCAACGAAAGAAAgcggaagtgctaaaatagcaattctcgtcag
aactttaaattctgaaaaacgttaaaatacactaaaatctcaatatattt
cgaccatgattgtagtacgTAAGAGAAACGAGCAATatctaaaagaaatt
ttcttttttgctgtAATAACATTTTTGCACGAACCAGACCAAAAAATGAC
TAGATTTCTGATAGTATGTCGAGTTTAAAAAATGCATGTCTTTTTGCCCT
TATCAGATGCTtaacttttattcttttttgttGATGTCCATATGAAAAGT
GAATGGCTAATATCGAAAATCGAAgttgtcttttttttattttcttaagt
TCACTGTCCCCACCATAATACCTATCGATGTGAGAATGTTTTTAGTTGTT
ATGCCATGCGCGACACGAAATCGTCCCTTGAAATTAGTCATTTATTTTTC
ACCCTTAAAGCACCCCTGTGATAAAGATTTAATGTTGTTTCCCTGGGTCA
TTTGGGGGAATTAAAAACACCcgttttgaaaagataaaacCTCCTTAGTA
TCTTTCACTTTTGTTTCTAAAACTACTGAGACCATGACCAGTAAAATACA
TACATACACACAAACTGACTGACTGAATGAAACGGTCCTTCCTATATCTA
GGCGCCGCTCCACCACCCGCAAATCCAGTGGCCCCTTCATTACGTTTGTG
CCCTGGTGATTGCGACCCACAATGTGCTCCAGCTTGCCATGACTTTTGTT
GCAGTGGACATCCGGCCTTAAATAGATACAACGGACCACCTCCATGTGCC
GAGCCCCCATGTATGCCTCCTATGCCACCCCCAATGCCAATGGCTGCACC
CTGTGCCCAACCCCCTTGCGCCCCTGCAATGCCAATGGCTGCACCTTGTG
CCCAACCCCCTTGCGCTCCACCAATGCCAATGGCTGCACCTTGTGCCCAA
CCCCCTTGCGCCCCACCAATGCCAATGGCTGCACCTTGTGCCCAACCCCC
TTGCGCCCCACCGATGCCAATGGCTGCACCTTGTGCCCAACCACCATGCG
CTCCAGCCATGCCTGCTGCTATGCCATGCGCCCAACCTCCTTGTATGCCA
GCATCAGCTCCTATGTGTCAACCACCCCCTAGTTGCATGCCAGCTGCCGC
CCCTTCTGTGTGTGCACCAGGTCTTGTTCGATGTATGCCTGCTCAACCAG
CAGCAGGATGCAACCTCCCACCACAATGCCCTCAAGCCACCCCTATGCCA
CAGTGTCTCCCTCCTGGTGCTTGTAGTGCTGAAGAGATCCCAACCCCAAC
AGAAAAACCTAAGCAAGAAAATTTGACCATGCATGAAATGATCATGAATA
TGCCACTACCATGTGCTCAACCTCCATGCATGCCTGCTGCTATGCCATGC
GCCCAGCCGCCTTGTATGCAAGCCCCTATGGCTGCACCCTGTGCCCAACC
TCCCTGTGCTGCTGCCCCTATGCCAATGTCTGCTGCTTGTGCCCAACCCC
CATGTGCTTCTGCTCCAATGCCAATGTCTGCTCCATGCGCCCAGCCTCCT
TGTGCTCCAGCCATGCAAATGGCTGCACCCTGCGCACGACCACCTTGTGC
CCCTGCAATGCCTGCTGCTATGCCATGTGCCCAGCCTCCCTGTGCTGCTG
CCCCAATGCCAATGGCCGCCCCCTGCGCCCAACCACCTTGTGCCCCTGCA
ATGCCTGCTGCTATGCCTTGTGCTCAGCCTCCATGTGCTCCACCCATGGC
AGCCACCCCAGCCTGCGCTAAACCACCCTGCATGGCTCAACCTTCATGTG
CTTCTTGTCGTCGCCATTGTGCTCCTCATTGTCCCAAAAGATGCTGTAAA
AAATCCACCAAGAAAtctcacaaaaacaaacattgaatTCCTTAACATCC
TTTGAACTTAGTGTAGATAGACAGCCTTCCTCATTATGAGATCGACATTT
TTAGGATTTGATGAGCCTCCACCACaaacaccaccaccaccaccttCGAA
ATGTAACCAGTGTGATCCTTCTGATAGTAGTTGCCAATCTGACCCATCTT
GTGCCCAACAACAGGGTGCCATGTGCACCCCCCAACCTGGTTGTGCCCCT
TCCTTCACTCCAGGGTGCCTTAACTGCATGCCACAATACCCATCAGGATG
TGCTGCCTTACCTCCAATGTGTTTCCCTCAAATGATGCCCCCTCCTCCCC
CTCCTCCTTGTCCTGCCCCTGGTTCCTGCACACCAGCAGAACTTGAAGCA
AGCAAAATGCCGACTCCTCCTCCAGTCCCTGTGCAATTCCAAAGTCCAGA
TTCATTCCTTGTCACATGTCCATTGCCGCCCTGCATGCAACAACAGATGC
CTTGTGGTCAAGCTGGAGCTGCCCCTTGTCCCGGAGCTAAGTCCCCTGCG
TGTCCTTCCGGTTGTGGAAGTACTTGTGGCCCAAAATGTCATCGGCGTTG
CTGtaaaaagcataaaaaatcaaccaagaAAACCTCAAAACACAAGCGGA
AACAACATTAATTCTTTTTCTACCATTTTATAAAAACCCTCTAAAACACA
TAtaccaaacaaacaaaaacattctcACAATcacatcaaaaaaacttttt
cttcattAAATAGGAATGGCCCCACCTCCTCCACCTCCACCTAAACCAGC
ACCAAAACCTGTCTGCGATGAATGTCCACCAGCCGGTGCTCCACCACCAT
TAGACTGTATGCCTGCCCCAGCCTGTGCCCCAGTTGCTGACCCATGTATG
CCAGCACCGGGATGTGCCCCAATGGCCCCACCAATGGGATGCATGGGAGC
CGCTTGTGCCCCACAAATGCCCGCCGGATGCGCCCCAATGCCAGCCGGAT
GTGCCCCACCAATGCCAGCCATGCCCGCTATGCCCGCCCCATGTGCCCCA
CAACCAGGATGTGCCCCAATGGCTCCACCAGTTGGATGTCAAGGTGCCGC
CTGTGCCCCACAAATGCCCGCCGGATGTGCCCCAATGGCAGCCGGATGTG
CCCCACCAATGCCCATGCCAATGTCCCCCTGTGGAATGTGTAAGAAACAC
TGCACAAAAGCATGTCAAGCCAAGAAATGCTGCAAAAAATCCGCAAAGAC
CAAGAAGGCTAAGAAACATCATTAAATTCTCACTCGCTTATCTATGATGC
CAACTTCAACCAAACACAATGTGGAATGTCAACCTTTTTTTACCATGATA
TAGAGTTTTAaacaatataattatttttttgttaaaagtaaatatttttt
ttctgcaagaaagttgatttgaattttaatacatatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051283-exon-scaffold_200-1491911889:86940..87014 | TCONS_00051283-exon-scaffold_200-1491911889:86940..87014 | Clytia hemisphaerica | exon |
| TCONS_00051283-exon-scaffold_200-1510915933:86940..87014 | TCONS_00051283-exon-scaffold_200-1510915933:86940..87014 | Clytia hemisphaerica | exon |
| TCONS_00051283-exon-scaffold_200-1575043694:86940..87014 | TCONS_00051283-exon-scaffold_200-1575043694:86940..87014 | Clytia hemisphaerica | exon |
| TCONS_00051283-exon-scaffold_200-1491911889:87348..87468 | TCONS_00051283-exon-scaffold_200-1491911889:87348..87468 | Clytia hemisphaerica | exon |
| TCONS_00051283-exon-scaffold_200-1510915933:87348..87468 | TCONS_00051283-exon-scaffold_200-1510915933:87348..87468 | Clytia hemisphaerica | exon |
| TCONS_00051283-exon-scaffold_200-1575043694:87348..87468 | TCONS_00051283-exon-scaffold_200-1575043694:87348..87468 | Clytia hemisphaerica | exon |
| TCONS_00051283-exon-scaffold_200-1491911889:87614..87961 | TCONS_00051283-exon-scaffold_200-1491911889:87614..87961 | Clytia hemisphaerica | exon |
| TCONS_00051283-exon-scaffold_200-1510915933:87614..87961 | TCONS_00051283-exon-scaffold_200-1510915933:87614..87961 | Clytia hemisphaerica | exon |
| TCONS_00051283-exon-scaffold_200-1575043694:87614..87961 | TCONS_00051283-exon-scaffold_200-1575043694:87614..87961 | Clytia hemisphaerica | exon |
| TCONS_00051283-exon-scaffold_200-1491911889:91803..92476 | TCONS_00051283-exon-scaffold_200-1491911889:91803..92476 | Clytia hemisphaerica | exon |
| TCONS_00051283-exon-scaffold_200-1510915933:91803..92476 | TCONS_00051283-exon-scaffold_200-1510915933:91803..92476 | Clytia hemisphaerica | exon |
| TCONS_00051283-exon-scaffold_200-1575043694:91803..92476 | TCONS_00051283-exon-scaffold_200-1575043694:91803..92476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:86940..92476 + |
Blast
The following BLAST results are available for this feature:
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