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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051271 ID=TCONS_00051271|Name=TCONS_00051271|organism=Clytia hemisphaerica|type=transcript|length=1230bp
caATGTCATATATAtaagacatgggctatgtaggagggtgaagccctcct
gtaatgcccagtttgagttagaaattgtaatttttagtccaactcgtagg
aattggattgggctatTTGTCCAGGAAAAAAAAGGATCGAAaatgagtct
tttcagcgacaTTTTAAACTACGCGTCATTTCATGtcaattttgttcaat
tttaaaATCCAATCGAGATTTATCTCCGGTGCCTATAACCAGACAATATT
AATATATTTTGGTTACTTCAAGGATGGGATTTGAATATATGTGGCGTGAA
GCTACCGTACTGTATTCTCAGCGGATGTTTTTCATGGTTTCCCTTCAACA
GTTTAAACAACTACCTTTCAAAAACAAATATCAtcattggaaaaaaaata
tatagaaaCCTACCAACCGAAATCTTTAATGTTTAtcctttttaaatctt
tttacaAGAAGGTGGAAACGAAATCCTAGCTTTATGTTGCAGCGAATCAA
GTTGTACTTTAATATGGGAGATATTCAAGGCATTTTATTATGTTTTCTAT
TGGTCAATATCATACCAGTTTTATCAATCAAAGTTGATAAAGTCCACCAA
TTTGAGGAGACATTAATACAATCCCACCTACCAATCCTGATGACAGAGGC
GTTCACCATCTTGGATAAGTATCACGACTTTTCAACATGTCTACCATTAT
GGACAAGACCGAACGCGTGCTTGACACCAGCCAACAATCATTGCAATTTA
CCACCTATAACATTATTGGGTCAGACCTTTCCAGTTAGCGGGACCTTCGA
TTTCTGTCCACTGACACAAATCATACACGCGAAAGTTTATGCCCCAAACA
TAGATATCAAAGTCAAACCGATACGATATCAACTCAATTACAACAAGGCG
GAGAAAATACTTCATGTTTCCGCTAAGATTCAAAAGAAAGTCACTGGTTT
GGAAGTTCTTCAATTTATCGGCTCATTCAAATTCGACACGGCGCTCAAGC
TTGATGTTGACTTGTCCAGTTTCCCTAAACTCCAATACAGCTTGGAATTA
CACTATAGCATACGTCAGAAGAATCTACTGCAGAAAGACTACAAATGCGT
TTCGTGTAACAAAGCATGGCGTAGAAGTGGCCAATGGAACGTTTCTCCTT
TGTTATATCATTTTTCTAGATTCTTGTAAATAagtttttggttattttgg
caAGGAAAGAATATGGATCTTGAAAATAAT Run BLAST on NCBI protein sequence of TCONS_00051271-protein >TCONS_00051271-protein ID=TCONS_00051271-protein|Name=TCONS_00051271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MLQRIKLYFNMGDIQGILLCFLLVNIIPVLSIKVDKVHQFEETLIQSHLP
ILMTEAFTILDKYHDFSTCLPLWTRPNACLTPANNHCNLPPITLLGQTFP
VSGTFDFCPLTQIIHAKVYAPNIDIKVKPIRYQLNYNKAEKILHVSAKIQ
KKVTGLEVLQFIGSFKFDTALKLDVDLSSFPKLQYSLELHYSIRQKNLLQ
KDYKCVSCNKAWRRSGQWNVSPLLYHFSRFL Run BLAST on NCBI transcript from alignment at scaffold_20:286441..287670 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051271 ID=TCONS_00051271|Name=TCONS_00051271|organism=Clytia hemisphaerica|type=transcript|length=1230bp|location=Sequence derived from alignment at scaffold_20:286441..287670 (Clytia hemisphaerica)
ATTATTTTCAAGATCCATATTCTTTCCTtgccaaaataaccaaaaactTA
TTTACAAGAATCTAGAAAAATGATATAACAAAGGAGAAACGTTCCATTGG
CCACTTCTACGCCATGCTTTGTTACACGAAACGCATTTGTAGTCTTTCTG
CAGTAGATTCTTCTGACGTATGCTATAGTGTAATTCCAAGCTGTATTGGA
GTTTAGGGAAACTGGACAAGTCAACATCAAGCTTGAGCGCCGTGTCGAAT
TTGAATGAGCCGATAAATTGAAGAACTTCCAAACCAGTGACTTTCTTTTG
AATCTTAGCGGAAACATGAAGTATTTTCTCCGCCTTGTTGTAATTGAGTT
GATATCGTATCGGTTTGACTTTGATATCTATGTTTGGGGCATAAACTTTC
GCGTGTATGATTTGTGTCAGTGGACAGAAATCGAAGGTCCCGCTAACTGG
AAAGGTCTGACCCAATAATGTTATAGGTGGTAAATTGCAATGATTGTTGG
CTGGTGTCAAGCACGCGTTCGGTCTTGTCCATAATGGTAGACATGTTGAA
AAGTCGTGATACTTATCCAAGATGGTGAACGCCTCTGTCATCAGGATTGG
TAGGTGGGATTGTATTAATGTCTCCTCAAATTGGTGGACTTTATCAACTT
TGATTGATAAAACTGGTATGATATTGACCAATAGAAAACATAATAAAATG
CCTTGAATATCTCCCATATTAAAGTACAACTTGATTCGCTGCAACATAAA
GCTAGGATTTCGTTTCCACCTTCTtgtaaaaagatttaaaaaggaTAAAC
ATTAAAGATTTCGGTTGGTAGGtttctatatattttttttccaatgaTGA
TATTTGTTTTTGAAAGGTAGTTGTTTAAACTGTTGAAGGGAAACCATGAA
AAACATCCGCTGAGAATACAGTACGGTAGCTTCACGCCACATATATTCAA
ATCCCATCCTTGAAGTAACCAAAATATATTAATATTGTCTGGTTATAGGC
ACCGGAGATAAATCTCGATTGGATtttaaaattgaacaaaattgaCATGA
AATGACGCGTAGTTTAAAAtgtcgctgaaaagactcattTTCGATCCTTT
TTTTTCCTGGACAAatagcccaatccaattcctacgagttggactaaaaa
ttacaatttctaactcaaactgggcattacaggagggcttcaccctccta
catagcccatgtcttaTATATATGACATtg Coding sequence (CDS) from alignment at scaffold_20:286441..287670 >TCONS_00051271 ID=TCONS_00051271|Name=TCONS_00051271|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_20:286441..287670 (Clytia hemisphaerica)
TTACAAGAATCTAGAAAAATGATATAACAAAGGAGAAACGTTCCATTGGC
CACTTCTACGCCATGCTTTGTTACACGAAACGCATTTGTAGTCTTTCTGC
AGTAGATTCTTCTGACGTATGCTATAGTGTAATTCCAAGCTGTATTGGAG
TTTAGGGAAACTGGACAAGTCAACATCAAGCTTGAGCGCCGTGTCGAATT
TGAATGAGCCGATAAATTGAAGAACTTCCAAACCAGTGACTTTCTTTTGA
ATCTTAGCGGAAACATGAAGTATTTTCTCCGCCTTGTTGTAATTGAGTTG
ATATCGTATCGGTTTGACTTTGATATCTATGTTTGGGGCATAAACTTTCG
CGTGTATGATTTGTGTCAGTGGACAGAAATCGAAGGTCCCGCTAACTGGA
AAGGTCTGACCCAATAATGTTATAGGTGGTAAATTGCAATGATTGTTGGC
TGGTGTCAAGCACGCGTTCGGTCTTGTCCATAATGGTAGACATGTTGAAA
AGTCGTGATACTTATCCAAGATGGTGAACGCCTCTGTCATCAGGATTGGT
AGGTGGGATTGTATTAATGTCTCCTCAAATTGGTGGACTTTATCAACTTT
GATTGATAAAACTGGTATGATATTGACCAATAGAAAACATAATAAAATGC
CTTGAATATCTCCCATATTAAAGTACAACTTGATTCGCTGCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051271-exon-scaffold_20-1491911889:286441..287670 | TCONS_00051271-exon-scaffold_20-1491911889:286441..287670 | Clytia hemisphaerica | exon |
| TCONS_00051271-exon-scaffold_20-1510915933:286441..287670 | TCONS_00051271-exon-scaffold_20-1510915933:286441..287670 | Clytia hemisphaerica | exon |
| TCONS_00051271-exon-scaffold_20-1575043694:286441..287670 | TCONS_00051271-exon-scaffold_20-1575043694:286441..287670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:286441..287670 . |
Blast
The following BLAST results are available for this feature:
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