TCONS_00051260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051260
Unique NameTCONS_00051260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051260 ID=TCONS_00051260|Name=TCONS_00051260|organism=Clytia hemisphaerica|type=transcript|length=233bp
cagaactttgtgaaaaatacaataaaatgaaaatatgaaatgatGGAAAA
CGAAATTCCGCTGTTAAATGATTGGTTGGTTATCCATTTACATGTTGCCG
GGGGTGATGGAAAGAATCGAAAGCCAGGGTTAAATCCCCatcaaaaatca
aacattttttcaaagatcaTTTTGTTCAAAcattttggtagattttttgG
AATGGAACACGAGAGAAAGAACTATACGTTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_20:164686..164918

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051260 ID=TCONS_00051260|Name=TCONS_00051260|organism=Clytia hemisphaerica|type=transcript|length=233bp|location=Sequence derived from alignment at scaffold_20:164686..164918 (Clytia hemisphaerica)
CTTAACGTATAGTTCTTTCTCTCGTGTTCCATTCcaaaaaatctaccaaa
atgTTTGAACAAAAtgatctttgaaaaaatgtttgatttttgatGGGGAT
TTAACCCTGGCTTTCGATTCTTTCCATCACCCCCGGCAACATGTAAATGG
ATAACCAACCAATCATTTAACAGCGGAATTTCGTTTTCCatcatttcata
ttttcattttattgtatttttcacaaagttctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032487XLOC_032487Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051260-exon-scaffold_20-1491911889:164686..164918TCONS_00051260-exon-scaffold_20-1491911889:164686..164918Clytia hemisphaericaexon
TCONS_00051260-exon-scaffold_20-1510915933:164686..164918TCONS_00051260-exon-scaffold_20-1510915933:164686..164918Clytia hemisphaericaexon
TCONS_00051260-exon-scaffold_20-1575043694:164686..164918TCONS_00051260-exon-scaffold_20-1575043694:164686..164918Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:164686..164918 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.02668	0	2.27961	0	0	2.14551	2.58847	2.42329	2.5449	2.10152	14.2785	10.0565	4.68653	1.39057	6.85944	7.36124	0.755703	3.09829	1.07011	2.23959	1.94661	1.42423	8.07959	3.14808	4.32327	6.75222	0	0	3.35198	2.27675
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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