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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051239 ID=TCONS_00051239|Name=TCONS_00051239|organism=Clytia hemisphaerica|type=transcript|length=4784bpRun BLAST on NCBI protein sequence of TCONS_00051239-protein >TCONS_00051239-protein ID=TCONS_00051239-protein|Name=TCONS_00051239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1183bp MQPPMFNPMQAPRPGGPPTMQQPPTMQRPPSMQAPLAMQQPPMMKPPGTMRun BLAST on NCBI transcript from alignment at scaffold_20:167252..187584- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051239 ID=TCONS_00051239|Name=TCONS_00051239|organism=Clytia hemisphaerica|type=transcript|length=20333bp|location=Sequence derived from alignment at scaffold_20:167252..187584- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_20:167252..187584- >TCONS_00051239 ID=TCONS_00051239|Name=TCONS_00051239|organism=Clytia hemisphaerica|type=CDS|length=74592bp|location=Sequence derived from alignment at scaffold_20:167252..187584- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051239 vs. Swiss-Prot (Human)
Match: SC24C (Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3) HSP 1 Score: 930.628 bits (2404), Expect = 0.000e+0 Identity = 432/798 (54.14%), Postives = 587/798 (73.56%), Query Frame = 2
Query: 1286 KIDPNQMPNPIQVMSEDQASFDNEIFQTSSRGKVPPLVSTKCRIQDDGNCSPRYMRSSVYSIPCNQDMLKESGIPMAIVTTPFAKIPEDEHQLRYVDQGPTGPIRCNRCKAYMNPFMQFIDGGRRFVCNICSHSSEVPAEYFCHLDHQGRRVDMYERPELCFGSYEYIATADYCKDSKLPQPPAFIFMIDVSYQSMQQGMVRILSSELHKLLDELPKDIGMNESVIKVGFVTYSTQLHFYNVKANLAQPQMMVVADLEDSFVPLLDGFLVDYREAKAVVDSLLEMLPEMFKDTRETDVVLGPVVAAGLEALKSAGISGKLYIFHSSLPITEAPGKLKNREDRKLLNTDKEKTILVPQGNYYMNMAKECVNNGVSIDLFLFPNSYVDVATIGLMVTQTGGQVYRYSYFKENTHGQQFVNDLYKNFKREIGFDAIMRLRCSXYKNFKREIGFDAIMRLRCSTGLRPVEFFGSFVMNNTTDVELATIDSDKAIVIEIKHDDKIPEDGVAYVQNALLYTSASGQRRLRIHNLAFATCSQLADLYRCCELDTAVNYFTKYALRQVLSSNPQSIRENLVQKCVQILACYRQHCATPSTSGQLILPECMKLLPLYMNCLIKSDVLSGGSEISSDDRAFLMQACLSMPPSFTSSYLYPRVISXXXXXXXXXXXXIPPQMRCLGEKFEESGVYLLENTISMFLWIGLHADQSFISQVFGVNSMGQIDIEMTSLPALETPLSTRVREIIDSIQSERQRYLKLTIVRQRDKLEPWFKHYIVEDKGFNAGQMSYVDFLCHVHKEIRNLLS 3679
++DP+ +P+PIQV+ +D+ + E F T RG+VPPLV+T ++D GN SPRY+R + Y+IPC DM K++ +P+A V P A++P +E VD G +GP+RCNRCKAYM PFMQFI+GGRRF C CS ++VP +YF HLDH G+RVD Y+RPEL GSYE++AT DYCK++K P PPAFIFMIDVSY +++ G+VR+L EL LLD LP++ G ES I+VGFVTY+ LHFYNVK++LAQPQMMVV+D+ D FVPLLDGFLV+ E++AV+ SLL+ +PEMF DTRET+ V PV+ AG+EALK+A +GKL++FH+SLPI EAPGKLKNR+DRKL+NTDKEKT+ PQ Y +AKECV G +DLFLFPN YVDVAT+ ++ TGG VY+Y+ F+ ++F++DL ++ ++ +GFD A+MR+R STG+R V+FFG+F M+NTTDVELA +D DK + +E KHDD++ E+ A +Q ALLYTS +GQRRLRIHNLA C+QLADLYR CE DT +NY K+A R VL+S +++R+ L+ +C QILACYR++CA+PS++GQLILPECMKLLP+Y+NC++KSDVL G+E+++DDRA++ Q SM + T+ + YPR++ L + + PP +R E+ +YLLEN +++FLW+G Q + +F V+S QI ++ LP L+ PLS +VR +IDS++++R RY+KLT+V+Q DK+E FKH++VEDK + G SYVDFLCH+HKEIR LLS
Sbjct: 320 RLDPDAIPSPIQVIEDDRNNRGTEPFVTGVRGQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFD--------------------AVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTE--PPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGG-ASYVDFLCHMHKEIRQLLS 1094 The following BLAST results are available for this feature:
BLAST of TCONS_00051239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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