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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051213 ID=TCONS_00051213|Name=TCONS_00051213|organism=Clytia hemisphaerica|type=transcript|length=1635bp
ATGgttaaatatcaaaataatcaaagtAAGAAGAACTAGATTTGTGCTTG
TACAGTGACGTATGATTGAAGACATCATCATTATCATGGCAAGGAACAAA
TCCCGACAAAACTTCCTCCCAAGGGAGACAGAAATCTGCCGTGAAATAGA
AGAAACTTGGTCTCAAAACGAAAAAAACTGTATTAGAATAAGAAGTTATT
CTACAAACGGTTTTGATCGCAGTGGGAAATATTTTACGATTGATTTAGGT
GGCTCCGGTGGCTCACCCTATCAAATATTAGTGTACCATTTTGACAATGA
TATTCAAGCATTGAAATATAATCTGGTTAACCTGGAGATCATGAATAAAA
AGCATTACAAGAGAAGTATGCTTGATCCGTTTACGACTCGCTGGTTTTGT
ATATCTATGGAATTTGACAAAGAGAAACAATTTGTCCATATCGAAAGTGG
ATGTCTTGAGAAGTATTTAGGGAGATCAGTGACCATACCTATAGACGCAG
AACAACAGTCTGGTTGTATTGAACGCTCGTATCCTCGAGGTCACATTATT
GAATTCCATATTCGCGTAATCAATACTGAACGTTACTTAGAAACATTAGT
ACAAGCAAGGGGTAGTAGAGATTATGTTATTgacttattcaaatttgatg
aaaagaaCTTGTTACACTTTAAACGTTTAACAATACCTGATAACATTGGT
TATCTTTTGTATGGGCGACTCGTGGTCGCTTCGGTGTACCCCCTGTATGA
TTTACGATCTGAGAGATTATACCTTATCGAGAAAAGCAATAGGAATGATA
GAGGTATCTTAAGTGGATTTGATTTATctggaaataaaatatttgaatac
CGAATTCAGAAGCAAGCAAAATGTGGTGGTCTCGATCaagatttttgttt
tattgaacACATAAATGGATCAATATTTGTAATCGTTTGGACGGACTTGG
AAGTTAGTATTTGCAATTTTACCCACACCAGAATGGTCATTTTGAACAGT
TTTCAATTACCCCCTGAAATGAAACATTCTGCTAGTTTCGATTTACTCCG
ATGTTTTGAGAAATGTTATCTTTGCATTGagactgaaaaatatttgaaaa
tttcttcgaatGGTGTTCGATTATTTGATATCAGCTCTGGTCAATTAGTT
TACAATTTTGAAACTGGTTTTTTATTACATATGTTTTGCTTCAATCGGAg
tttggaagaattttcagttGTTATTGTTGACGAGACTCGTTGTAGACCAG
ATTATTtccttaaaatcttaaaaacaggATTATTCAGAAACAGCGAGACA
AATTTGAAACAATGGGCTCGATTAGCGTGTTTGAATCATTTTGATGACGA
ATATTTGGCTGGAAATCTTCCTCGTTGTCTGAAAGAATATCTTGGAATTC
TCTAGATTGGGCTCttcagaaaaaagtttgaattttggatgGAGGATATA
ACTTCTTTCAGAAATTCACCCTCTGAACATTTTTTGTGACTTCTAACCCC
TCGATCAAGCATCTGTTGACCCCCTAAACAATCTAAATTaacccaaacag
agcaagtacGAATATTTTCTGGAAGATCCCATTAGGCTCTATTGGGATAG
TACTGTTTACGAATGAATTTCACTATCAATTTAAA Run BLAST on NCBI protein sequence of TCONS_00051213-protein >TCONS_00051213-protein ID=TCONS_00051213-protein|Name=TCONS_00051213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp
MIEDIIIIMARNKSRQNFLPRETEICREIEETWSQNEKNCIRIRSYSTNG
FDRSGKYFTIDLGGSGGSPYQILVYHFDNDIQALKYNLVNLEIMNKKHYK
RSMLDPFTTRWFCISMEFDKEKQFVHIESGCLEKYLGRSVTIPIDAEQQS
GCIERSYPRGHIIEFHIRVINTERYLETLVQARGSRDYVIDLFKFDEKNL
LHFKRLTIPDNIGYLLYGRLVVASVYPLYDLRSERLYLIEKSNRNDRGIL
SGFDLSGNKIFEYRIQKQAKCGGLDQDFCFIEHINGSIFVIVWTDLEVSI
CNFTHTRMVILNSFQLPPEMKHSASFDLLRCFEKCYLCIETEKYLKISSN
GVRLFDISSGQLVYNFETGFLLHMFCFNRSLEEFSVVIVDETRCRPDYFL
KILKTGLFRNSETNLKQWARLACLNHFDDEYLAGNLPRCLKEYLGIL Run BLAST on NCBI transcript from alignment at scaffold_20:25958..27651+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051213 ID=TCONS_00051213|Name=TCONS_00051213|organism=Clytia hemisphaerica|type=transcript|length=1694bp|location=Sequence derived from alignment at scaffold_20:25958..27651+ (Clytia hemisphaerica)
ATGgttaaatatcaaaataatcaaagtAAGAAGAACTAGATTTGTGCTTG
TACAGTGACGTATGATTGAAGACATCATCATTATCATGGCAAGGAACAAA
TCCCGACAAAACTTCCTCCCAAGGGAGACAGAAATCTGCCGTGAAATAGA
AGAAACTTGGTCTCAAAACGAAAAAAACTGTATTAGAATAAGAAGTTATT
CTACAAACGGTTTTGATCGCAGTGGGAAATATTTTACGATTGATTTAGGT
GGCTCCGGTGGCTCACCCTATCAAATATTAGTGTACCATTTTGACAATGA
TATTCAAGCATTGAAATATAATCTGGTTAACCTGGAGATCATGAATAAAA
AGCATTACAAGAGAAGTATGCTTGATCCGTTTACGACTCGCTGGTTTTGT
ATATCTATGGAATTTGACAAAGAGAAACAATTTGTCCATATCGAAAGTGG
ATGTCTTGAGAAGTATTTAGGGAGATCAGTGACCATACCTATAGACGCAG
AACAACAGTCTGGTTGTATTGAACGCTCGTATCCTCGAGGTCACATTATT
GAATTCCATATTCGCGTAATCAATACTGAACGTTACTTAGAAACATTAGT
ACAAGCAAGGGGTAGTAGAGATTATGTTATCGACTTATTCAAATTTGNGA
AACATTAGTACAAGCAAGGGGTAGTAGAGATTATGTTATTgacttattca
aatttgatgaaaagaaCTTGTTACACTTTAAACGTTTAACAATACCTGAT
AACATTGGTTATCTTTTGTATGGGCGACTCGTGGTCGCTTCGGTGTACCC
CCTGTATGATTTACGATCTGAGAGATTATACCTTATCGAGAAAAGCAATA
GGAATGATAGAGGTATCTTAAGTGGATTTGATTTATctggaaataaaata
tttgaatacCGAATTCAGAAGCAAGCAAAATGTGGTGGTCTCGATCaaga
tttttgttttattgaacACATAAATGGATCAATATTTGTAATCGTTTGGA
CGGACTTGGAAGTTAGTATTTGCAATTTTACCCACACCAGAATGGTCATT
TTGAACAGTTTTCAATTACCCCCTGAAATGAAACATTCTGCTAGTTTCGA
TTTACTCCGATGTTTTGAGAAATGTTATCTTTGCATTGagactgaaaaat
atttgaaaatttcttcgaatGGTGTTCGATTATTTGATATCAGCTCTGGT
CAATTAGTTTACAATTTTGAAACTGGTTTTTTATTACATATGTTTTGCTT
CAATCGGAgtttggaagaattttcagttGTTATTGTTGACGAGACTCGTT
GTAGACCAGATTATTtccttaaaatcttaaaaacaggATTATTCAGAAAC
AGCGAGACAAATTTGAAACAATGGGCTCGATTAGCGTGTTTGAATCATTT
TGATGACGAATATTTGGCTGGAAATCTTCCTCGTTGTCTGAAAGAATATC
TTGGAATTCTCTAGATTGGGCTCttcagaaaaaagtttgaattttggatg
GAGGATATAACTTCTTTCAGAAATTCACCCTCTGAACATTTTTTGTGACT
TCTAACCCCTCGATCAAGCATCTGTTGACCCCCTAAACAATCTAAATTaa
cccaaacagagcaagtacGAATATTTTCTGGAAGATCCCATTAGGCTCTA
TTGGGATAGTACTGTTTACGAATGAATTTCACTATCAATTTAAA Coding sequence (CDS) from alignment at scaffold_20:25958..27651+ >TCONS_00051213 ID=TCONS_00051213|Name=TCONS_00051213|organism=Clytia hemisphaerica|type=CDS|length=2688bp|location=Sequence derived from alignment at scaffold_20:25958..27651+ (Clytia hemisphaerica)
ATGATTGAAGACATCATCATTATCATGGCAAGGAACAAATCCCGACAAAA
CTTCCTCCCAAGGGAGACAGAAATCTGCCGTGAAATAGAAGAAACTTGGT
CTCAAAACGAAAAAAACTGTATTAGAATAAGAAGTTATTCTACAAACGGT
TTTGATCGCAGTGGGAAATATTTTACGATTGATTTAGGTGGCTCCGGTGG
CTCACCCTATCAAATATTAGTGTACCATTTTGACAATGATATTCAAGCAT
TGAAATATAATCTGGTTAACCTGGAGATCATGAATAAAAAGCATTACAAG
AGAAGTATGCTTGATCCGTTTACGACTCGCTGGTTTTGTATATCTATGGA
ATTTGACAAAGAGAAACAATTTGTCCATATCGAAAGTGGATGTCTTGAGA
AGTATTTAGGGAGATCAGTGACCATACCTATAGACGCAGAACAACAGTCT
GGTTGTATTGAACGCTCGTATCCTCGAGGTCACATTATTGAATTCCATAT
TCGCGTAATCAATACTGAACGTTACTTAGAAACATTAGTACAAGCAAGGG
GTAGTAGAGATTATGTTATTgacttattcaaatttgatgaaaagaaCTTG
TTACACTTTAAACGTTTAACAATACCTGATAACATTGGTTATCTTTTGTA
TGGGCGACTCGTGGTCGCTTCGGTGTACCCCCTGTATGATTTACGATCTG
AGAGATTATACCTTATCGAGAAAAGCAATAGGAATGATAGAGGTATCTTA
AGTGGATTTGATTTATctggaaataaaatatttgaatacCGAATTCAGAA
GCAAGCAAAATGTGGTGGTCTCGATCaagatttttgttttattgaacACA
TAAATGGATCAATATTTGTAATCGTTTGGACGGACTTGGAAGTTAGTATT
TGCAATTTTACCCACACCAGAATGGTCATTTTGAACAGTTTTCAATTACC
CCCTGAAATGAAACATTCTGCTAGTTTCGATTTACTCCGATGTTTTGAGA
AATGTTATCTTTGCATTGagactgaaaaatatttgaaaatttcttcgaat
GGTGTTCGATTATTTGATATCAGCTCTGGTCAATTAGTTTACAATTTTGA
AACTGGTTTTTTATTACATATGTTTTGCTTCAATCGGAgtttggaagaat
tttcagttGTTATTGTTGACGAGACTCGTTGTAGACCAGATTATTtcctt
aaaatcttaaaaacaggATTATTCAGAAACAGCGAGACAAATTTGAAACA
ATGGGCTCGATTAGCGTGTTTGAATCATTTTGATGACGAATATTTGGCTG
GAAATCTTCCTCGTTGTCTGAAAGAATATCTTGGAATTCTCTAGATGATT
GAAGACATCATCATTATCATGGCAAGGAACAAATCCCGACAAAACTTCCT
CCCAAGGGAGACAGAAATCTGCCGTGAAATAGAAGAAACTTGGTCTCAAA
ACGAAAAAAACTGTATTAGAATAAGAAGTTATTCTACAAACGGTTTTGAT
CGCAGTGGGAAATATTTTACGATTGATTTAGGTGGCTCCGGTGGCTCACC
CTATCAAATATTAGTGTACCATTTTGACAATGATATTCAAGCATTGAAAT
ATAATCTGGTTAACCTGGAGATCATGAATAAAAAGCATTACAAGAGAAGT
ATGCTTGATCCGTTTACGACTCGCTGGTTTTGTATATCTATGGAATTTGA
CAAAGAGAAACAATTTGTCCATATCGAAAGTGGATGTCTTGAGAAGTATT
TAGGGAGATCAGTGACCATACCTATAGACGCAGAACAACAGTCTGGTTGT
ATTGAACGCTCGTATCCTCGAGGTCACATTATTGAATTCCATATTCGCGT
AATCAATACTGAACGTTACTTAGAAACATTAGTACAAGCAAGGGGTAGTA
GAGATTATGTTATTgacttattcaaatttgatgaaaagaaCTTGTTACAC
TTTAAACGTTTAACAATACCTGATAACATTGGTTATCTTTTGTATGGGCG
ACTCGTGGTCGCTTCGGTGTACCCCCTGTATGATTTACGATCTGAGAGAT
TATACCTTATCGAGAAAAGCAATAGGAATGATAGAGGTATCTTAAGTGGA
TTTGATTTATctggaaataaaatatttgaatacCGAATTCAGAAGCAAGC
AAAATGTGGTGGTCTCGATCaagatttttgttttattgaacACATAAATG
GATCAATATTTGTAATCGTTTGGACGGACTTGGAAGTTAGTATTTGCAAT
TTTACCCACACCAGAATGGTCATTTTGAACAGTTTTCAATTACCCCCTGA
AATGAAACATTCTGCTAGTTTCGATTTACTCCGATGTTTTGAGAAATGTT
ATCTTTGCATTGagactgaaaaatatttgaaaatttcttcgaatGGTGTT
CGATTATTTGATATCAGCTCTGGTCAATTAGTTTACAATTTTGAAACTGG
TTTTTTATTACATATGTTTTGCTTCAATCGGAgtttggaagaattttcag
ttGTTATTGTTGACGAGACTCGTTGTAGACCAGATTATTtccttaaaatc
ttaaaaacaggATTATTCAGAAACAGCGAGACAAATTTGAAACAATGGGC
TCGATTAGCGTGTTTGAATCATTTTGATGACGAATATTTGGCTGGAAATC
TTCCTCGTTGTCTGAAAGAATATCTTGGAATTCTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051213-exon-scaffold_20-1491911889:25958..26551 | TCONS_00051213-exon-scaffold_20-1491911889:25958..26551 | Clytia hemisphaerica | exon |
| TCONS_00051213-exon-scaffold_20-1510915933:25958..26551 | TCONS_00051213-exon-scaffold_20-1510915933:25958..26551 | Clytia hemisphaerica | exon |
| TCONS_00051213-exon-scaffold_20-1575043694:25958..26551 | TCONS_00051213-exon-scaffold_20-1575043694:25958..26551 | Clytia hemisphaerica | exon |
| TCONS_00051213-exon-scaffold_20-1491911889:26611..27651 | TCONS_00051213-exon-scaffold_20-1491911889:26611..27651 | Clytia hemisphaerica | exon |
| TCONS_00051213-exon-scaffold_20-1510915933:26611..27651 | TCONS_00051213-exon-scaffold_20-1510915933:26611..27651 | Clytia hemisphaerica | exon |
| TCONS_00051213-exon-scaffold_20-1575043694:26611..27651 | TCONS_00051213-exon-scaffold_20-1575043694:26611..27651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_20 | supercontig | scaffold_20:25958..27651 + |
Blast
The following BLAST results are available for this feature:
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