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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051188 ID=TCONS_00051188|Name=TCONS_00051188|organism=Clytia hemisphaerica|type=transcript|length=2936bpRun BLAST on NCBI protein sequence of TCONS_00051188-protein >TCONS_00051188-protein ID=TCONS_00051188-protein|Name=TCONS_00051188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=796bp MPIENYVIGDVIGKGSYGEVTLASNKKDKKKYVIKKIDLHNANAKERTFARun BLAST on NCBI transcript from alignment at scaffold_2:210182..225617- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051188 ID=TCONS_00051188|Name=TCONS_00051188|organism=Clytia hemisphaerica|type=transcript|length=15436bp|location=Sequence derived from alignment at scaffold_2:210182..225617- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_2:210182..225617- >TCONS_00051188 ID=TCONS_00051188|Name=TCONS_00051188|organism=Clytia hemisphaerica|type=CDS|length=35865bp|location=Sequence derived from alignment at scaffold_2:210182..225617- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051188 vs. Swiss-Prot (Human)
Match: NEK4 (Serine/threonine-protein kinase Nek4 OS=Homo sapiens GN=NEK4 PE=1 SV=2) HSP 1 Score: 394.045 bits (1011), Expect = 2.361e-121 Identity = 185/280 (66.07%), Postives = 234/280 (83.57%), Query Frame = 1
Query: 70 MPIENYVIGDVIGKGSYGEVTLASNXXXXXXXXXXXXXLHNANAKERTFAQQEVEILSKLRHPNIVSYKESFQTNDGHLAIIMGYCEGGDLYTKLKKQAKQGEFLTETQIVEWFVQIAMALQYMHDRNILHRDLKTQNIFLTKSKIIKLGDLGIARVLDSNADMATTMIGTPYYMSPELFSNKPYNHKSDVWALGCCVYEMATLKHAFNAKDMNSLVYKILKGKTPTMPKHYSEELLEIIRSMLKYEPSSRPSASRILRHAFIKKHIALFLEGTKNRHKK 909
MP+ Y V+GKGSYGEVTL +++D K+YVIKK++L NA+++ER A+QE ++LS+L+HPNIV+YKES++ DG L I+MG+CEGGDLY KLK+Q +G+ L E Q+VEWFVQIAMALQY+H+++ILHRDLKTQN+FLT++ IIK+GDLGIARVL+++ DMA+T+IGTPYYMSPELFSNKPYN+KSDVWALGCCVYEMATLKHAFNAKDMNSLVY+I++GK P MP+ YS EL E+IR+ML P RPS ILR +IK+ I+ FLE TK + K
Sbjct: 1 MPLAAYCYLRVVGKGSYGEVTLVKHRRDGKQYVIKKLNLRNASSRERRAAEQEAQLLSQLKHPNIVTYKESWEGGDGLLYIVMGFCEGGDLYRKLKEQ--KGQLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPRDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKRQISFFLEATKIKTSK 278 The following BLAST results are available for this feature:
BLAST of TCONS_00051188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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