TCONS_00051163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051163
Unique NameTCONS_00051163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051163 ID=TCONS_00051163|Name=TCONS_00051163|organism=Clytia hemisphaerica|type=transcript|length=485bp
AAAAAGACAAACTGAGCTTTCAAAATGGCTGATTGCCCATCAATCAACTC
TGGAAAATTCTTTTTGATGATGATGATATTATTGCAAAAAAACCCTCATT
CTTAAAAAAAAGACTTGCTCTGACCTAAAATTGGTATTGCTGTTGTTGTA
GTTGTAGTGGTGGCGGTAGTTGTTGTAGTTGTTGTGGTAGGCTGAGGCgt
ggttgttgtagttgttgtggTAGGCTGAGGCGTGGTTGTCGAAGTTTTGG
TTGATTTGAGGGTAGTAGTTTTGGTTGTTATTGTAGTCGCTACTTCTGCT
GTAGGATTAGTTACAGGTGTGACTGtaaatatgatttttgttgTGGAACC
TGATATTGATGCCATGGTTGTTACCACCTTTGACTGCGAAGTTGTGGTTA
CACATATCAGTGGAAAGTAGATTAGTAGACTGTGGACTAAAAGTCCTAGG
TATCTATTGAAATAGTTTTGATGACTCATTCTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_2:28698..29314+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051163 ID=TCONS_00051163|Name=TCONS_00051163|organism=Clytia hemisphaerica|type=transcript|length=617bp|location=Sequence derived from alignment at scaffold_2:28698..29314+ (Clytia hemisphaerica)
AAAAAGACAAACTGAGCTTTCAAAATGGCTGATTGCCCATCAATCAACTC
TGGAAAATTCTTTTTGATGATGATGATATTATTGCAAAAAAACCCTCATT
CTTAAAAAAAAGACTTGCTCTGACCTAAAATTGGTATTGCTGTTGTTGTA
GTTGTAGTGGTGGCGGTAGTTGTTGTAGTTGTTGTGGTAGGCTGAGGCgt
ggttgttgtagttgttgtggTAGGCTGAGGggtggttgttgtagttgttg
tggTAGGCTGAGGggtggttgttgtagttgttgtggTAGGCTGAGGcgtg
gttgttgtagttgttgtggTAGGCTGAGGggtggttgttgtagttgttgt
ggTAGGCTGAGGCGTGGTTGTCGAAGTTTTGGTTGATTTGAGGGTAGTAG
TTTTGGTTGTTATTGTAGTCGCTACTTCTGCTGTAGGATTAGTTACAGGT
GTGACTGtaaatatgatttttgttgTGGAACCTGATATTGATGCCATGGT
TGTTACCACCTTTGACTGCGAAGTTGTGGTTACACATATCAGTGGAAAGT
AGATTAGTAGACTGTGGACTAAAAGTCCTAGGTATCTATTGAAATAGTTT
TGATGACTCATTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032431XLOC_032431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051163-exon-scaffold_2-1491911889:28698..28920TCONS_00051163-exon-scaffold_2-1491911889:28698..28920Clytia hemisphaericaexon
TCONS_00051163-exon-scaffold_2-1510915933:28698..28920TCONS_00051163-exon-scaffold_2-1510915933:28698..28920Clytia hemisphaericaexon
TCONS_00051163-exon-scaffold_2-1575043694:28698..28920TCONS_00051163-exon-scaffold_2-1575043694:28698..28920Clytia hemisphaericaexon
TCONS_00051163-exon-scaffold_2-1491911889:29053..29314TCONS_00051163-exon-scaffold_2-1491911889:29053..29314Clytia hemisphaericaexon
TCONS_00051163-exon-scaffold_2-1510915933:29053..29314TCONS_00051163-exon-scaffold_2-1510915933:29053..29314Clytia hemisphaericaexon
TCONS_00051163-exon-scaffold_2-1575043694:29053..29314TCONS_00051163-exon-scaffold_2-1575043694:29053..29314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:28698..29314 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.89447	0.36163	0.66713	0	0.340939	0	0	0	0	0	0	0.445473	1.36253	0.502441	0.344342	0	0.0381234	0.283704	0.607224	0.380542	0.277078	0	0.183308	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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