TCONS_00051159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051159
Unique NameTCONS_00051159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051159 ID=TCONS_00051159|Name=TCONS_00051159|organism=Clytia hemisphaerica|type=transcript|length=256bp
CAACGGTgttgtccttgaaaaagcagaaaaatttgtgttaattttaATTG
CTAATGTTTTAATTTGTTAATTGTCAATTTCAAGGCCCTTAAATACTTGT
CGTACATTCGGGCGAGAAGCCGCACTCTTTTAGCAAGAACTAATTTTTAT
GCTATTTATTTACGAATGGCAAGGTTAATTGCATCTTATTTTGTCTAAAC
ATGTGCgtttttttaagcaataaaatATAAGGctgttttggaaaaattaa
ttttat
Run BLAST on NCBI

transcript from alignment at scaffold_199:131148..131403

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051159 ID=TCONS_00051159|Name=TCONS_00051159|organism=Clytia hemisphaerica|type=transcript|length=256bp|location=Sequence derived from alignment at scaffold_199:131148..131403 (Clytia hemisphaerica)
ataaaattaatttttccaaaacagCCTTATattttattgcttaaaaaaac
GCACATGTTTAGACAAAATAAGATGCAATTAACCTTGCCATTCGTAAATA
AATAGCATAAAAATTAGTTCTTGCTAAAAGAGTGCGGCTTCTCGCCCGAA
TGTACGACAAGTATTTAAGGGCCTTGAAATTGACAATTAACAAATTAAAA
CATTAGCAATtaaaattaacacaaatttttctgctttttcaaggacaacA
CCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032427XLOC_032427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051159-exon-scaffold_199-1491911889:131148..131403TCONS_00051159-exon-scaffold_199-1491911889:131148..131403Clytia hemisphaericaexon
TCONS_00051159-exon-scaffold_199-1510915933:131148..131403TCONS_00051159-exon-scaffold_199-1510915933:131148..131403Clytia hemisphaericaexon
TCONS_00051159-exon-scaffold_199-1575043694:131148..131403TCONS_00051159-exon-scaffold_199-1575043694:131148..131403Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_199supercontigscaffold_199:131148..131403 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.69794	0.680601	0	0.773129	0	2.97503	0.897311	3.36021	4.11698	7.54139	5.65685	1.8593	0	0	0	0.425305	3.66758	1.61107	0.741925	0	0.674808	0	2.40073	1.45508	0	0	4.78507	6.1281	0	0.789254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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