TCONS_00051129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051129
Unique NameTCONS_00051129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051129 ID=TCONS_00051129|Name=TCONS_00051129|organism=Clytia hemisphaerica|type=transcript|length=627bp
gGTAATTTGGATTGTccgatgcttgtccaggggtaaaactGTTATATGCT
CCACGCCCTCTCCCCcacattcaatatttttctggaaaagcccaatttta
TAATcgaatattttgtaaatttgaaattattgatgcatataataataatt
gaatttttgagaatttaacTGACGAAGGGTCTTCTGTGTTTTTTGTACCG
TTTGCATATATAATGTCGTAAATAGCTAACGTTGCAGTCTACAATCAGTA
AGAAACAGGTCCTAAGTTAATGAGGGTCTAGTTAAATCGAAAACTAACCT
TCACCGGCCCAGAAAAATACAtgtacataaactcgctatgtactatatac
cgggtgcaccaaaaaaaagtatacaggtttgttgAGATATTGTGATCGgt
aggatttaaattttttgtttactcttTTTTTATGGTATAGAGGATGCTGT
AATCTGATgaatacattaaatttgaaaaagcagttcgaaatttatttcca
aaaatctaaattttttcatGTCGAAATTTTGTTTGAGTTGGTTTCATAAG
TATGTGCTAACGACGTGACAGGATCGAAATTATTGGGAAATTTTGAGAAC
AATTTAGGTCTGGAGTATATAAGGTGT
Run BLAST on NCBI

transcript from alignment at scaffold_197:46443..47069

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051129 ID=TCONS_00051129|Name=TCONS_00051129|organism=Clytia hemisphaerica|type=transcript|length=627bp|location=Sequence derived from alignment at scaffold_197:46443..47069 (Clytia hemisphaerica)
ACACCTTATATACTCCAGACCTAAATTGTTCTCAAAATTTCCCAATAATT
TCGATCCTGTCACGTCGTTAGCACATACTTATGAAACCAACTCAAACAAA
ATTTCGACatgaaaaaatttagatttttggaaataaatttcgaactgctt
tttcaaatttaatgtattcATCAGATTACAGCATCCTCTATACCATAAAA
AaagagtaaacaaaaaatttaaatcctacCGATCACAATATCTcaacaaa
cctgtatacttttttttggtgcacccggtatatagtacatagcgagttta
tgtacaTGTATTTTTCTGGGCCGGTGAAGGTTAGTTTTCGATTTAACTAG
ACCCTCATTAACTTAGGACCTGTTTCTTACTGATTGTAGACTGCAACGTT
AGCTATTTACGACATTATATATGCAAACGGTACAAAAAACACAGAAGACC
CTTCGTCAgttaaattctcaaaaattcaattattattatatgcatcaata
atttcaaatttacaaaatattcgATTAtaaaattgggcttttccagaaaa
atattgaatgtgGGGGAGAGGGCGTGGAGCATATAACagttttacccctg
gacaagcatcggACAATCCAAATTACc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032416XLOC_032416Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051129-exon-scaffold_197-1491911889:46443..47069TCONS_00051129-exon-scaffold_197-1491911889:46443..47069Clytia hemisphaericaexon
TCONS_00051129-exon-scaffold_197-1510915933:46443..47069TCONS_00051129-exon-scaffold_197-1510915933:46443..47069Clytia hemisphaericaexon
TCONS_00051129-exon-scaffold_197-1575043694:46443..47069TCONS_00051129-exon-scaffold_197-1575043694:46443..47069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_197supercontigscaffold_197:46443..47069 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.320316	0.339373	0	0	0	0	0.0725696	0.0901507	0	0.0565836	0.056468	0	0.0492833	0	0	0	0	0	0	0	0	0	0	0.657402	0	0.13382	0	0.154846
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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