TCONS_00051087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051087
Unique NameTCONS_00051087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051087 ID=TCONS_00051087|Name=TCONS_00051087|organism=Clytia hemisphaerica|type=transcript|length=419bp
AGCACGAGGCATTATGTGTGCAAAAAATTGTACGCGACGCGTTTACTTCG
GGTttgacttttgtttttgtttttgtgtgtgtgacattcgaatgttttca
ttgattcgaacgtttgaatgttcgaaaaagaaatcaatGGAATATTTGgg
ttattcgaatgtttttgtttttatcgaaATTCACTGACAAAAATAGATCA
GACGAGACAGGAGTGAAGTGAAgagatcaaaaatttttggagtGAAGCTG
AACTATTTCAATTTCCGGTCCAATGGTTTTCTTTTTACCCGCGTGCTTTG
TTGATGTTAGCGTGACATCTATTTGAATAATTAATATTTTAAAAGCTTTT
GTCCCCACATTTGagagagagaaactttttcgaatatttttttttgttta
tgtttttgtctCACATTCG
Run BLAST on NCBI

transcript from alignment at scaffold_193:135241..135659

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051087 ID=TCONS_00051087|Name=TCONS_00051087|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at scaffold_193:135241..135659 (Clytia hemisphaerica)
CGAATGTGagacaaaaacataaacaaaaaaaaatattcgaaaaagtttct
ctctctCAAATGTGGGGACAAAAGCTTTTAAAATATTAATTATTCAAATA
GATGTCACGCTAACATCAACAAAGCACGCGGGTAAAAAGAAAACCATTGG
ACCGGAAATTGAAATAGTTCAGCTTCactccaaaaatttttgatctcTTC
ACTTCACTCCTGTCTCGTCTGATCTATTTTTGTCAGTGAATttcgataaa
aacaaaaacattcgaataaccCAAATATTCCattgatttctttttcgaac
attcaaacgttcgaatcaatgaaaacattcgaatgtcacacacacaaaaa
caaaaacaaaagtcaaACCCGAAGTAAACGCGTCGCGTACAATTTTTTGC
ACACATAATGCCTCGTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032380XLOC_032380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051087-exon-scaffold_193-1491911889:135241..135659TCONS_00051087-exon-scaffold_193-1491911889:135241..135659Clytia hemisphaericaexon
TCONS_00051087-exon-scaffold_193-1510915933:135241..135659TCONS_00051087-exon-scaffold_193-1510915933:135241..135659Clytia hemisphaericaexon
TCONS_00051087-exon-scaffold_193-1575043694:135241..135659TCONS_00051087-exon-scaffold_193-1575043694:135241..135659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:135241..135659 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.168942	0.329489	0.956422	0.187142	2.96175	1.80032	2.60641	2.64343	2.98964	1.76341	1.19812	3.48794	2.02244	3.61722	0.575584	0.102948	0	0	0.718355	0	0.163342	0.239018	0	0.704424	0.36277	0.647528	0.231653	0	0	0.191045
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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