|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051059 ID=TCONS_00051059|Name=TCONS_00051059|organism=Clytia hemisphaerica|type=transcript|length=936bp
GCATTATATACTTTTTAATTGATCTAATCCGTTGATGCATATCAAGGAAA
TGGGGTATAAATAGAGGCTTCGATACACTACAAAAGGAAGCGAATACAGG
ATTTCACAAGAAGGAGATAGAATTTATGTACATGGCTTACGAAAACTGAC
TTTGACAACCTTCAAAAAAATCCATACATAGATACCTTTTTGTCTGacat
taattttcaaaaacaaattttatgaagaattgATTAGTTTTGTCAAGCTA
TATGAGAAATGTTACTATCAAAATGTATTCAATATGTGATCTTCTTGATT
GGTCTGTCAATTTTGCATCAAAACTGTTTTGTCGAAACAGCACCTATATC
AAATATAGCATCGACGAAGCGCACAATTGCACaaaatatttcagaaattc
gtGAACTACAAttccaaaatttcttcaaaaatctacCTGAAGAAAGTTTT
GAACAAACTGAACATGATATGGAAGAAATCTACCAAATAGAACAGAAGAT
TTTCGACGATTTTCCATTTCTCCTTGATAATAAACAAGAGTCGTTGATGG
CGAGGACCGATGATAGCAGCAATCCGAGCGCCGAGAACAAGACACGGGAA
ATTACCGAGACAAATAATAACAAAAGtacggaaaataaaacaaaagaaat
aatcAACAACCCTCGGAAGAATACCGGAAATGactttgtttcaataaaaa
ctgaaaatgaaactCGGGAACCCGAGCATAATTCTCGGAAGCGAAGATCA
GCACCGCAAAGGTACGAAACACAAGCTCGTTCTCGGTATCGTTTACGTTT
ACTTCGATATTACCAAGAGCTGTATTGCAAAAGGAGATGTGCTTGGAGAA
GATTATGGTTTCTCGCCACCCATGGTGTTGAACCAAGCGCTTGTTCTTGT
TAGGAAATTTGGGCGTTGATTGCGCTGTGTCACAAT Run BLAST on NCBI protein sequence of TCONS_00051059-protein >TCONS_00051059-protein ID=TCONS_00051059-protein|Name=TCONS_00051059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MLLSKCIQYVIFLIGLSILHQNCFVETAPISNIASTKRTIAQNISEIREL
QFQNFFKNLPEESFEQTEHDMEEIYQIEQKIFDDFPFLLDNKQESLMART
DDSSNPSAENKTREITETNNNKSTENKTKEIINNPRKNTGNDFVSIKTEN
ETREPEHNSRKRRSAPQRYETQARSRYRLRLLRYYQELYCKRRCAWRRLW
FLATHGVEPSACSC Run BLAST on NCBI transcript from alignment at scaffold_193:303622..305080+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051059 ID=TCONS_00051059|Name=TCONS_00051059|organism=Clytia hemisphaerica|type=transcript|length=1459bp|location=Sequence derived from alignment at scaffold_193:303622..305080+ (Clytia hemisphaerica)
GCATTATATACTTTTTAATTGATCTAATCCGTTGATGCATATCAAGGAAA
TGGGGTATAAATAGAGGCTTCGATACACTACAAAAGGAAGCGAATACAGG
ATTTCACAAGAAGGAGATAGAATTTATGTACATGGCTTACGAAAACTGAC
TTTGACAACCTTCAAAAAAATCCATACATAGATACCTTTTTGTCTGacat
taattttcaaaaacaaattttatgaagaattgATTAGTTTTGTCAAGCTA
TATGAGAAATGTTACTATCAAAATGTATTCAATATGTGGTAAGTGTTACC
TAGCGATTTTTATCGttattttggtagtttttaacGGTTTTTGGTGTTAT
TCACGAAATGACGTCAGTTCCTTGAAACAGTACCGAATTTAAATCTAAAG
GATATTAATCGTCCCACCTAATTTGAGTGGGAACCTTTTTTacaatccca
gctggcacacaacgttgttttaacgtacAAATAACGttgtttggacgtta
tgaatgtcacatggacgttgttttgacgttgtgtgccgtctggtATAGTT
ACACACAGTATTGTGGTGGTATAGGGACAATACCTCCTAGCGGCTTTCTT
TTAGCTGGGGATGCCAGAAGTCAGGGGGTCCCTTGGGTCACTAAATTTTA
GAGCCTGtctagttttttttaactttaacaAAGCTTTTTGTAGAAAAGAG
GTCCCTAGATCTTATTCTTCTCTAATTGTTGTGAACGATGCTTCCGAAGC
CTCGGAGAACATTAATCATCAATTATGAAATATCAAGAAATATTCACTTT
TCTCTTCTTAGATCTTCTTGATTGGTCTGTCAATTTTGCATCAAAACTGT
TTTGTCGAAACAGCACCTATATCAAATATAGCATCGACGAAGCGCACAAT
TGCACaaaatatttcagaaattcgtGAACTACAAttccaaaatttcttca
aaaatctacCTGAAGAAAGTTTTGAACAAACTGAACATGATATGGAAGAA
ATCTACCAAATAGAACAGAAGATTTTCGACGATTTTCCATTTCTCCTTGA
TAATAAACAAGAGTCGTTGATGGCGAGGACCGATGATAGCAGCAATCCGA
GCGCCGAGAACAAGACACGGGAAATTACCGAGACAAATAATAACAAAAGt
acggaaaataaaacaaaagaaataatcAACAACCCTCGGAAGAATACCGG
AAATGactttgtttcaataaaaactgaaaatgaaactCGGGAACCCGAGC
ATAATTCTCGGAAGCGAAGATCAGCACCGCAAAGGTACGAAACACAAGCT
CGTTCTCGGTATCGTTTACGTTTACTTCGATATTACCAAGAGCTGTATTG
CAAAAGGAGATGTGCTTGGAGAAGATTATGGTTTCTCGCCACCCATGGTG
TTGAACCAAGCGCTTGTTCTTGTTAGGAAATTTGGGCGTTGATTGCGCTG
TGTCACAAT Coding sequence (CDS) from alignment at scaffold_193:303622..305080+ >TCONS_00051059 ID=TCONS_00051059|Name=TCONS_00051059|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_193:303622..305080+ (Clytia hemisphaerica)
ATGTTACTATCAAAATGTATTCAATATGTGATCTTCTTGATTGGTCTGTC
AATTTTGCATCAAAACTGTTTTGTCGAAACAGCACCTATATCAAATATAG
CATCGACGAAGCGCACAATTGCACaaaatatttcagaaattcgtGAACTA
CAAttccaaaatttcttcaaaaatctacCTGAAGAAAGTTTTGAACAAAC
TGAACATGATATGGAAGAAATCTACCAAATAGAACAGAAGATTTTCGACG
ATTTTCCATTTCTCCTTGATAATAAACAAGAGTCGTTGATGGCGAGGACC
GATGATAGCAGCAATCCGAGCGCCGAGAACAAGACACGGGAAATTACCGA
GACAAATAATAACAAAAGtacggaaaataaaacaaaagaaataatcAACA
ACCCTCGGAAGAATACCGGAAATGactttgtttcaataaaaactgaaaat
gaaactCGGGAACCCGAGCATAATTCTCGGAAGCGAAGATCAGCACCGCA
AAGGTACGAAACACAAGCTCGTTCTCGGTATCGTTTACGTTTACTTCGAT
ATTACCAAGAGCTGTATTGCAAAAGGAGATGTGCTTGGAGAAGATTATGG
TTTCTCGCCACCCATGGTGTTGAACCAAGCGCTTGTTCTTGTTAGATGTT
ACTATCAAAATGTATTCAATATGTGATCTTCTTGATTGGTCTGTCAATTT
TGCATCAAAACTGTTTTGTCGAAACAGCACCTATATCAAATATAGCATCG
ACGAAGCGCACAATTGCACaaaatatttcagaaattcgtGAACTACAAtt
ccaaaatttcttcaaaaatctacCTGAAGAAAGTTTTGAACAAACTGAAC
ATGATATGGAAGAAATCTACCAAATAGAACAGAAGATTTTCGACGATTTT
CCATTTCTCCTTGATAATAAACAAGAGTCGTTGATGGCGAGGACCGATGA
TAGCAGCAATCCGAGCGCCGAGAACAAGACACGGGAAATTACCGAGACAA
ATAATAACAAAAGtacggaaaataaaacaaaagaaataatcAACAACCCT
CGGAAGAATACCGGAAATGactttgtttcaataaaaactgaaaatgaaac
tCGGGAACCCGAGCATAATTCTCGGAAGCGAAGATCAGCACCGCAAAGGT
ACGAAACACAAGCTCGTTCTCGGTATCGTTTACGTTTACTTCGATATTAC
CAAGAGCTGTATTGCAAAAGGAGATGTGCTTGGAGAAGATTATGGTTTCT
CGCCACCCATGGTGTTGAACCAAGCGCTTGTTCTTGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051059-exon-scaffold_193-1491911889:303622..303909 | TCONS_00051059-exon-scaffold_193-1491911889:303622..303909 | Clytia hemisphaerica | exon |
| TCONS_00051059-exon-scaffold_193-1510915933:303622..303909 | TCONS_00051059-exon-scaffold_193-1510915933:303622..303909 | Clytia hemisphaerica | exon |
| TCONS_00051059-exon-scaffold_193-1575043694:303622..303909 | TCONS_00051059-exon-scaffold_193-1575043694:303622..303909 | Clytia hemisphaerica | exon |
| TCONS_00051059-exon-scaffold_193-1491911889:304433..305080 | TCONS_00051059-exon-scaffold_193-1491911889:304433..305080 | Clytia hemisphaerica | exon |
| TCONS_00051059-exon-scaffold_193-1510915933:304433..305080 | TCONS_00051059-exon-scaffold_193-1510915933:304433..305080 | Clytia hemisphaerica | exon |
| TCONS_00051059-exon-scaffold_193-1575043694:304433..305080 | TCONS_00051059-exon-scaffold_193-1575043694:304433..305080 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:303622..305080 + |
Blast
The following BLAST results are available for this feature:
|
