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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051033 ID=TCONS_00051033|Name=TCONS_00051033|organism=Clytia hemisphaerica|type=transcript|length=1662bp
TACGGGTTGAGATTGTCAATAGAACTTCCAAAAGGAGATAAACTTGAGCA
ATtcggggggaaattttgaaaagttaacaaaagTTTATCCCGTCACAATT
TTTCTCCGACTTAATTAAACCCCAAATCTTCTTCCCCGATAAGATATTTT
GCAACAGAAATTTACGACTGAAATTTCCCGTGTTAGGTCCCAACGGGTTC
TTTGATACAAGTGTGTAGGGCATTATTATGTTCTTCTGTTGCTCGCTTTT
CCTTTTAACATGTAATCGTTACAGCTTCGGTAAAACAACAAACGCAAAGC
AAATGCTTGCAGAGTTTGCTTGTTCTTATAATCTTCGTTTCTTGATCCAT
TCTGATTCCAAAGAGGACAGGGCCTAAAAATGAAATCGGAAAAACGATTA
ATTAATAGGCACGTTGTTACTTAACACGATACCACCAAACCGGTTTACTG
CCTAGTAATCGTAAAAATATACATGAACAATTAACGAGCCGTAATTACTA
ACAAACagatatattttcatatatttGATTTTGAGGCTGGCCGAAGTtat
attttactactttttGGTCTTCTTTGGGTCATTACTTtcgaaggaaatat
ttttaggttGTGAAATTTTAACACATTAATTTGAGGGACTTCAAGATGAT
GTATAATAAGTTTCATGCTCGTACGATCAATATTTGTTgcaaacgaaaat
aaaaatggtcaaaagtgGCCGAAGTCATCTGGACTTACGGTATGGATTCC
ACAAAATCTCGCGtcgaagatatttttccgtacagcaagcctcacgccaa
gcaaaatttcttttgtaccaacattcaatttttaataagGGTGCAAGATG
GGAAAAGAGGCGCATGCGCCAACATAATTAATAAATTGACGCAAGCGTAA
GCAAGCAAAAGCTAATTTAGCCAAAATGAAAGCTAAAAATCAATGAATTA
TGGAGTCATTCACGCCGAGCTGGATTTATTACTTTACACCAACTGAAAac
caaacaatctttgtaagtacccttaaaCCAATGCgtcaaaaacgtttcag
ttgcACGTTATAGTTTACACGAAATCCATGCTGGCAAATACGTCCATCCA
AGTCCAAAAACATGATTGCATcctgtctttatcaaatttagacagtagct
gtacttttttatactttatcatattccaataacattataacatgATCAAT
TCCACCTACAGCTGGAGGCAAACAggaaaaatatgtttatttattatgca
aaaagcagaaattcttaaaaataacaaaaacttgagcaaattgcTAAACG
ttcaacaaatataaaaaagaatccccttgatgaaaatcatgtgtttgatt
tgccaagtttcaaagtcattataaaaaagatatgacagaaattgaagctt
gcaacatgCATTTTACTTCCTGCATTTACACTGAAAACACTGAGCCGTTT
aaaccgccatcttgaaacaccacatctaTGTTTTCTAAAACAACACACGC
TGAAAGTACACTAAAACTTAACCCGATCGGATATAAACTttagaaatcgg
ggaaacacggCTTACGTAATGAGCATATCGGGGTAACATGTTTTTTTCGA
TTTTGGTCTGATGATGATGGGGAAAAAGCCTATTTGAATAATCAGCTGTT
GGCTGActaatt Run BLAST on NCBI transcript from alignment at scaffold_192:31075..32736 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051033 ID=TCONS_00051033|Name=TCONS_00051033|organism=Clytia hemisphaerica|type=transcript|length=1662bp|location=Sequence derived from alignment at scaffold_192:31075..32736 (Clytia hemisphaerica)
aattagTCAGCCAACAGCTGATTATTCAAATAGGCTTTTTCCCCATCATC
ATCAGACCAAAATCGAAAAAAACATGTTACCCCGATATGCTCATTACGTA
AGccgtgtttccccgatttctaaAGTTTATATCCGATCGGGTTAAGTTTT
AGTGTACTTTCAGCGTGTGTTGTTTTAGAAAACAtagatgtggtgtttca
agatggcggtttAAACGGCTCAGTGTTTTCAGTGTAAATGCAGGAAGTAA
AATGcatgttgcaagcttcaatttctgtcatatcttttttataatgactt
tgaaacttggcaaatcaaacacatgattttcatcaaggggattctttttt
atatttgttgaaCGTTTAgcaatttgctcaagtttttgttatttttaaga
atttctgctttttgcataataaataaacatatttttccTGTTTGCCTCCA
GCTGTAGGTGGAATTGATcatgttataatgttattggaatatgataaagt
ataaaaaagtacagctactgtctaaatttgataaagacaggATGCAATCA
TGTTTTTGGACTTGGATGGACGTATTTGCCAGCATGGATTTCGTGTAAAC
TATAACGTgcaactgaaacgtttttgacGCATTGGtttaagggtacttac
aaagattgtttggtTTTCAGTTGGTGTAAAGTAATAAATCCAGCTCGGCG
TGAATGACTCCATAATTCATTGATTTTTAGCTTTCATTTTGGCTAAATTA
GCTTTTGCTTGCTTACGCTTGCGTCAATTTATTAATTATGTTGGCGCATG
CGCCTCTTTTCCCATCTTGCACCcttattaaaaattgaatgttggtacaa
aagaaattttgcttggcgtgaggcttgctgtacggaaaaatatcttcgaC
GCGAGATTTTGTGGAATCCATACCGTAAGTCCAGATGACTTCGGCcactt
ttgaccatttttattttcgtttgcAACAAATATTGATCGTACGAGCATGA
AACTTATTATACATCATCTTGAAGTCCCTCAAATTAATGTGTTAAAATTT
CACaacctaaaaatatttccttcgaAAGTAATGACCCAAAGAAGACCaaa
aagtagtaaaatataACTTCGGCCAGCCTCAAAATCaaatatatgaaaat
atatctGTTTGTTAGTAATTACGGCTCGTTAATTGTTCATGTATATTTTT
ACGATTACTAGGCAGTAAACCGGTTTGGTGGTATCGTGTTAAGTAACAAC
GTGCCTATTAATTAATCGTTTTTCCGATTTCATTTTTAGGCCCTGTCCTC
TTTGGAATCAGAATGGATCAAGAAACGAAGATTATAAGAACAAGCAAACT
CTGCAAGCATTTGCTTTGCGTTTGTTGTTTTACCGAAGCTGTAACGATTA
CATGTTAAAAGGAAAAGCGAGCAACAGAAGAACATAATAATGCCCTACAC
ACTTGTATCAAAGAACCCGTTGGGACCTAACACGGGAAATTTCAGTCGTA
AATTTCTGTTGCAAAATATCTTATCGGGGAAGAAGATTTGGGGTTTAATT
AAGTCGGAGAAAAATTGTGACGGGATAAActtttgttaacttttcaaaat
ttccccccgaATTGCTCAAGTTTATCTCCTTTTGGAAGTTCTATTGACAA
TCTCAACCCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051033-exon-scaffold_192-1491911889:31075..32736 | TCONS_00051033-exon-scaffold_192-1491911889:31075..32736 | Clytia hemisphaerica | exon |
| TCONS_00051033-exon-scaffold_192-1510915933:31075..32736 | TCONS_00051033-exon-scaffold_192-1510915933:31075..32736 | Clytia hemisphaerica | exon |
| TCONS_00051033-exon-scaffold_192-1575043694:31075..32736 | TCONS_00051033-exon-scaffold_192-1575043694:31075..32736 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_192 | supercontig | scaffold_192:31075..32736 . |
Blast
The following BLAST results are available for this feature:
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