TCONS_00051029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051029
Unique NameTCONS_00051029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051029 ID=TCONS_00051029|Name=TCONS_00051029|organism=Clytia hemisphaerica|type=transcript|length=2512bp
ttcaggtaATAAAAGatgataataataaaaaagacaataaaTCTTACATA
AATTTTGGTTACACATTTTATTAACATGGAGAATGGATTTTCATCAATCA
GAAATAATCCCAGTGGTGGTGCTATTCCCAAAACTGGGAAAAGTAAATTC
TACACAACGGAACTAAGTTTTGAGGATAACTTTGATCCATCTAATTATAT
TCAAAAGAACACTCAACATCCAACAATAAAAGAAGATGATTCTTTTACCA
AGCCGGCGAACCCAGAacctgaaaaacaaaaagaaactaTCAATGACATT
TCAAGTCATAAAGTTAAACAGTCAGGAAGTCCTCTCATGTGCTATGTTGT
AAGACTTAAACATGGTGATGAGCTAAGAAAGTCTTTGTTATCCTTTGTCA
AAAAGAATGGACTAAAAGCAGCTTTTATTATGTCTTGTGTGGGTAGTTGC
ACATCAGCACGTGTACGCTTGGCGAGTGCTACCCCAGAAAATGAAGCCAA
TTATATGCTAGATTTGATCAATCCGATGGAAATTGTTTCATTAGATGGGA
CATTATCAGGGGGTGGTCACCTTCATGTTGGACTAGCAGATTATAGCGGT
AAAATGATGGGTGGCCACCTGCTGGAGTTGGTTGTTGACACCACAGCTGA
GGTAGTGATAGGAGATTGTAGTTCATTGTCATTTACCAGAACTTATGATC
AATCCACCGGTTTCCATGAGTTACAGGTTTCTGATAGATAAATGCTGGCT
TGTTTCATTGCCATTTACCTAACCAATGATCAAACCGCTGAGTTCAATGA
GTTAACAAGTTTCTGATAGATTATTACTTGTTTGTTTCATTGTCATTTAC
CATAACATATGATCAAACCACTGGTTTCCATGAGTTACAAGTTTCTGATC
AATTattgttgattttttgtatggtgTGTGGTGTAGTGAAAACATTTTCT
GAGAATTCATTCATAACCGGCACTTGATTACTTTTGTTTGCAATCGTCAA
GATGTTGATTTCACCATATTGATCGATActacattttcattttgaactaC
TGATGTTGTGCGTATTCAAAATGCAATTTTGGCTTTAGACAGAATGTGAA
CATACAGCtcgtctGCAAAAAGCAGGATATTTGAATGCAAAGAAATTCTC
ATAATTCGTGTGCAAATCTTTTGACCTAATTATActttatttcttctttc
aaaaacattttttgtcttACTGATTGCTAGTGATTTAACAATGAATCACC
ATCCTGCACCATCCTTATTTTGAAATCTAGTATGGTGAATGATTTCAAGG
ATATTCCTTTCATTGCAGTGATTTTGTcgtatattttttctttggattgt
TTTAGCTAGTTTTTGGATCTGTATAGCTTTTCAATGTTCTGGCTGAATTA
ATCCTAACTAAACATCCTAACGGCCTTCATTGCTAAATACTTAATCATCT
GAAACATTTTACAGGTTTTGTTGATGGTTTATCTATTGTATGAtgtcttt
gtatttttgtatatttacagTATTATTCATAATGCAATCACACAAATTAT
TGATAAACGCTGTGACATTGACATCTCATAAATTTCTgaaactaaaaatg
aagattctttagaaattctttttcattttaaagacaTGAGCCATGTTAGT
TTGTTCAGCAATATAAATCTTGCCAGCTATTGGGGGAaaaccgtaacttg
gtctaatgtcaacattcGCAATCGAATCGAGAtagaaataacaaaaaaag
acGGAGAATCAATCAATAGTGATAAGGGTGACGAAATTAGATGTGGGATG
TCGGCATTAGACGTTACAGTGTTTTCGATAAAGTGGGGTTAAAGTAGTGC
CATTAGTTTCATAGTCAGCAGGACTAGGCAACTctaattttcaacttttg
agaTATTAGAATGACAATAATTTCCATTCTCaaccttttcaaatttaaat
agTGTATATTTTTGTGACTTCATTCATATTATATAGAaattttgtattat
tttttgtaaaatcttcgTGACAGAGTTTGAAATCATTTATTTTAAAACAG
ATTGTATCAAAGTTTATTTAGATTGTTAGCATTTAAAAAAGGGGTTTTTT
GAGGTGATATAACttgtataaagttttttttctccggacttttttgtttg
tttgattttattggTACATTACCACAATGTAATCTTTATCGAGTTTCGTC
TGGTCCTATTTTTAAAATAGTCAATCGTACCTAATGCCATGCTTTATTTT
TTGGAATTAAGTATTGGTAATCGTCTAAAATCGGTCTAGATTTATTAAAA
TTCATGAATTGGTAGCATGAGACTGGCACCATgttgaaaaacatgaaatt
ttacgatttttagttaaatttttcttttattttaaacgATATTTCTATTC
ATAGTATCACTTACTACTATTTATGCAGAgcatttttgtttacattttaa
ttcttttgagATTCATTTTATAAACACAGTTTTTATGCCTTGGAAATCTT
ATTTGTTAAATA
Run BLAST on NCBI

transcript from alignment at scaffold_192:87441..92050-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051029 ID=TCONS_00051029|Name=TCONS_00051029|organism=Clytia hemisphaerica|type=transcript|length=4610bp|location=Sequence derived from alignment at scaffold_192:87441..92050- (Clytia hemisphaerica)
TTCAGGTAATAAAAGATGATAATAATAAAAAAGACAATAAATCTTACATA
AATTTTGGTTACACATTTTATTAACATGGAGAATGGATTTTCATCAATCA
GAAATAATCCCAGTGGTGGTGCTATTCCCAAAACTGGGAAAAGTAAATTC
TACACAACGGAACTAAGTTTTGAGGATAACTTTGATCCATCTAATTATAT
TCAAAAGAACACTCAACATCCAACAATAAAAGAAGATGATTCTTTTACCA
AGCCGGCGAACCCAGAACCTGAAAAACAAAAAGAAACTATCAATGACATT
TCAAGTCATAAAGTTAAACAGTCAGGAAGTCCTCTCATGTGCTATGTTGT
AAGACTTAAACATGGTGATGAGCTAAGAAAGTCTTTGTTATCCTTTGTCA
AAAAGAATGGACTAAAAGCAGCTTTTATTATGTCTTGTGTGGGTAGTTGC
ACATCAGCACGTGTACGCTTGGCGAGTGCTACCCCAGAAAATGAAGCCAA
TTATGTAAGTTTTTTTGCTTTTGACTCTGATAACATTCTTGCACTTATTG
TGTTATTTTTCCATCCCCAGCCAGACCATATTTTAGAAAGGTTGTCAAAA
AGGCACTTTTTTAGTGTTTTTCCACTAAAAAGGCTGTTTTTACCAAAATT
TTAGCGATTTCAGGAGGGGCAGCTAAAAGGGCATAAAAATGGCCTGCCCA
CTGAATTCTCTGACTAGGAAACAATGGAATTCGAATCCCCAGCCATAAGA
AAACATGGGAGTATCAATCCCCACCGAGTTTTGGTCTGCTATTTGAAGGG
GGTGCCTTTAAGAAACCATTTATCTCAATGTAATCTCATTTCTTTTCAGA
TGCTAGATTTGATCAATCCGATGGAAATTGTTTCATTAGATGGGACATTA
TCAGGGGGTGGTCACCTTCATGTTGGACTAGCAGATTATAGCGGTAAAAT
GATGGGTGGCCACCTGCTGGAGTTGGTTGTTGACACCACAGCTGAGGTAG
TGATAGGAGATTGTAGTTCATTGTCATTTACCAGAACTTATGATCAATCC
ACCGGTTTCCATGAGTTACAGGTTTCTGATAGATAAATGCTGGCTTGTTT
CATTGCCATTTACCTAACCAATGATCAAACCGCTGAGTTCAATGAGTTAA
CAAGTTTCTGATAGATTATTACTTGTTTGTTTCATTGTCATTTACCATAA
CATATGATCAAACCACTGGTTTCCATGAGTTACAAGTTTCTGATCAATTA
TTGTTGATTTTTTGTATGGTGTGTGGTGTAGTGAAAACATTTTCTGAGAA
TTCATTCATAACCGGCACTTGATTACTTTTGTTTGCAATCGTCAAGATGT
TGATTTCACCATATTGATCGATACTACATTTTCATTTTGAACTACTGATG
TTGTGCGTATTCAAAATGCAATTTTGGCTTTAGACAGAATGTGAACATAC
AGCATGTCTGCAAAGAGTCTGCTAAATTGCGTGGGTTGCGTGGGTGCGTG
GGTCAATATTTTTGCGTGGGTCAATATTCTTGCGTGGGTCATTTTTTTGC
GTGGGTGCGTGGGTCAAAATATTTTTTGCGTGGGTCAAAAATTTTGCGTG
GGTCAAATTTTTTGCGTGGGTCATATTTTTTGCGGGGGTCATTATTTTTT
GCGTGGGTCAAAAATTTTGCGTGGGTCAAATTTTTTGCGTGGGTCAAAGT
TTTTGCGTGGGTCACTATTTTTTTGGTCATTTTTTAGCTAACTCGATTTT
TTTACCAAATTAAAACTTTCAAGTTATCTTATACAAAAATGTATTGTGTA
TCTATGAAAACTAAACAAAAGCACACTGTTTTTATGTAACGCGTTGTGGT
TTATTTTGCATAGCTGCACTTATTTACTATAATATTATACAGAATCAACA
CACACCCGTCTAATTTTTGTAGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAATTTTTGT
AGACACACTTCAGGATCACACTTTTGAATTTTAGCATGCTATATTTCAGG
ATTCCAGTGTCATGGAAATAAACCCTATAACTCTAAGCAAAAAAAACGAG
ATATAATAAAATAATAAAAAGTACAGCATCTTTATTTCGTCCAATTTTTT
AAATTGGCCTTTAATGTACTTAAATCAAAGAAATTACAAGTGGGGTGGAC
GAAATAATTGACAACAATTAAATTGTTTAGTAATCGGTCGCCTAATGAAT
ATAACTTTTGTAGAAAAATTTTCAGATTTTGTCGCAATTTGCTTTGTTCT
TTAACACTCAAAGAAAACCCAAAAGATTAAAGCGTGCTATAAGAAGCTAT
AAAAGCTGACATGTTCAGTCAGCGGAATTAAAAAATATAAAGCCGCTTGA
CTGTGTACATTTTTTTGGCCATATTCTTAGGTATATACAAAACGTAACTA
CAGTATTAATTTTGGACGAAATCTCCCAAAAGGGAAAATTCCACTTATAA
AAAGACACTCCCCTGTTGGAAACATTCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACCATAT
TCAGAAAGTACGGAACTGTACAGCTATGCAAAATAAACAAAATAAACCAA
AACGTGTTATGTAAAACACATCCAACATTTTGGATGTGACCAGCTCGAAT
TTTCTTTTTTTCGAATTACAGATAGAATTTTGACCCACGCAAAAATTTTG
ACCCATGCAAAAAATAATGACCCACGCAAAAAATAATGACCCACGCAAAA
AATAATGACCCACGCAAAAAATAATGACCCACGCAAAAAATAATGACCCA
CGCAAAAAATAATGACCCACGCAAAAAATATGACCCACGCAAAAAATATG
ACCCACGCAAAAAATTTGACCCACGCAAAAAATATGACCCACGCAAAAAA
TTTGACCCACGCAAAAAATATTTTGACCCACGCACCCACGCAAAAAAATG
ACCCACGCAAAAATATTGACCCACGCACCCACGCAAAAAAATGACCCACG
CAAAAATATTGACCCACGCACCCACGCACCCACGCAACCCACGCAATTTA
GCAGACTCGTCTGCAAAAAGCAGGATATTTGAATGCAAAGAAATTCTCAT
AATTCGTGTGCAAATCTTTTGACCTAATTATACTTTATTTCTTCTTTCAA
AAACATTTTTTGTCTTACTGATTGCTAGTGATTTAACAATGAATCACCAT
CCTGCACCATCCTTATTTTGAAATCTAGTATGGTGAATGATTTCAAGGAT
ATTCCTTTCATTGCAGTGATTTTGTCGTATATTTTTTCTTTGGATTGTTT
TAGCTAGTTTTTGGATCTGTATAGCTTTTCAATGTTCTGGCTGAATTAAT
CCTAACTAAACATCCTAACGGCCTTCATTGCTAAATACTTAATCATCTGA
AACATTTTACAGGTTTTGTTGATGGTTTATCTATTGTATGATGTCTTTGT
ATTTTTGTATATTTACAGTATTATTCATAATGCAATCACACAAATTATTG
ATAAACGCTGTGACATTGACATCTCATAAATTTCTGAAACTAAAAATGAA
GATTCTTTAGAAATTCTTTTTCATTTTAAAGACATGAGCCATGTTAGTTT
GTTCAGCAATATAAATCTTGCCAGCTATTGGGGGAAAACCGTAACTTGGT
CTAATGTCAACATTCGCAATCGAATCGAGATAGAAATAACAAAAAAAGAC
GGAGAATCAATCAATAGTGATAAGGGTGACGAAATTAGATGTGGGATGTC
GGCATTAGACGTTACAGTGTTTTCGATAAAGTGGGGTTAAAGTAGTGCCA
TTAGTTTCATAGTCAGCAGGACTAGGCAACTCTAATTTTCAACTTTTGAG
ATATTAGAATGACAATAATTTCCATTCTCAACCTTTTCAAATTTAAATAG
TGTATATTTTTGTGACTTCATTCATATTATATAGAAATTTTGTATTATTT
TTTGTAAAATCTTCGTGACAGAGTTTGAAATCATTTATTTTAAAACAGAT
TGTATCAAAGTTTATTTAGATTGTTAGCATTTAAAAAAGGGGTTTTTTGA
GGTGATATAACTTGTATAAAGTTTTTTTTCTCCGGACTTTTTTGTTTGTT
TGATTTTATTGGTACATTACCACAATGTAATCTTTATCGAGTTTCGTCTG
GTCCTATTTTTAAAATAGTCAATCGTACCTAATGCCATGCTTTATTTTTT
GGAATTAAGTATTGGTAATCGTCTAAAATCGGTCTAGATTTATTAAAATT
CATGAATTGGTAGCATGAGACTGGCACCATGTTGAAAAACATGAAATTTT
ACGATTTTTAGTTAAATTTTTCTTTTATTTTAAACGATATTTCTATTCAT
AGTATCACTTACTACTATTTATGCAGAGCATTTTTGTTTACATTTTAATT
CTTTTGAGATTCATTTTATAAACACAGTTTTTATGCCTTGGAAATCTTAT
TTGTTAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032342XLOC_032342Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051029-exon-scaffold_192-1575043694:91547..92050TCONS_00051029-exon-scaffold_192-1575043694:91547..92050Clytia hemisphaericaexon
TCONS_00051029-exon-scaffold_192-1575043694:90598..91201TCONS_00051029-exon-scaffold_192-1575043694:90598..91201Clytia hemisphaericaexon
TCONS_00051029-exon-scaffold_192-1575043694:87441..88844TCONS_00051029-exon-scaffold_192-1575043694:87441..88844Clytia hemisphaericaexon
TCONS_00051029-exon-scaffold_192-1510915933:91547..92050TCONS_00051029-exon-scaffold_192-1510915933:91547..92050Clytia hemisphaericaexon
TCONS_00051029-exon-scaffold_192-1510915933:90598..91201TCONS_00051029-exon-scaffold_192-1510915933:90598..91201Clytia hemisphaericaexon
TCONS_00051029-exon-scaffold_192-1510915933:87441..88844TCONS_00051029-exon-scaffold_192-1510915933:87441..88844Clytia hemisphaericaexon
TCONS_00051029-exon-scaffold_192-1491911889:91547..92050TCONS_00051029-exon-scaffold_192-1491911889:91547..92050Clytia hemisphaericaexon
TCONS_00051029-exon-scaffold_192-1491911889:90598..91201TCONS_00051029-exon-scaffold_192-1491911889:90598..91201Clytia hemisphaericaexon
TCONS_00051029-exon-scaffold_192-1491911889:87441..88844TCONS_00051029-exon-scaffold_192-1491911889:87441..88844Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_192supercontigscaffold_192:87441..92050 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.87167	4.49774	2.9674	2.58439	19.9462	10.021	12.0207	13.4098	7.33652	9.26445	9.37755	7.15766	4.8587	6.54989	3.40992	4.67132	6.2886	7.36005	7.29553	6.96812	10.4178	8.3212	17.2874	17.2704	3.21959	4.36697	7.96806	5.13401	11.5291	12.0542
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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