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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050999 ID=TCONS_00050999|Name=TCONS_00050999|organism=Clytia hemisphaerica|type=transcript|length=1098bp
CAACGGAAGATTCAACATCTCCCTCCAAAAATACCAGCCCCTATCTTGAA
TGCTGATGGGACCAGGTATCTCAAATTCAGTGAAACGTACGGAAAAATTC
CAACGTCGGAAAAAGATTATCCGTCTTTGAGTGCTACATCTAACATCGAG
AAATCGAGGCCAAGGTATCGATTACTGGCCAATANAGTGGTTGCGACTTT
ATTTAGTCACCAATGTGGCAAAGCACGATGTGTGTTCAGCCTCGATGGGA
AGATTTCTACAAAGGGAGAGCGCGAGATTGAAGACGTAATTTTCACCTGT
GGGATGGCTTTAACAAGTGGTTCAGTTTACACAGCGACTGGATTAACTTG
TCGATCAAATATCGAAAACGCCTATTATCCGTCTCATCCCTCGAAAACAA
ATCTGATTTGCTATTATTGTGGCGGAGACCACATCTTGACGACAAGCTAC
AACCAAAAGAAGAAGCTTTTCAGGACGGTGTACCCTCTTTGCAGTATTTG
CAGTCCCTCTgggaaaaagaaatttgggCTGTACCATTGAACAACAAGCG
AAAAGCAACTGCCGCATCCGACAAGGCTGCACAGTCAAATCAAGATCGCA
ACAAGTCTACAGCTACACCATTAAATCAAACCATCAACAAGTCTACTGCA
TCAAACCAAAAGGAGAACGAGGCTACACTGTCAAATAGAAACAAAGACAA
ATCAAAGGTCAATCTGTTTACATCTCGATTCTCGTACACCAAAAAAGCTT
CAATTCGCAAAAGTCCCGCCAACAAATCCAAGACAAAAAGTACCATTGTC
AACAGTGTTAACAAAGAAGCAGTCCCTGTAGATAACGCCAGCAATGGGAC
GACCCCAATCCAAAACGTCAATAAGGAATCGACCCAAAACAACAGCGTCA
ACAAAGAAGCCCTTGTCAACACCGTCAACAATGAAACGACCCCGATCAAC
ATCGTCAACAATGAAACGTCCCCGATCAACATCGTCAACAATGAAACGAC
TCCAATCAGCATCAACGTCAACAATGAAACGTCCCCGATCAACATCGTCA
ACAATGAAACGACTCCAATCAGCATCAACGTAAACAATGAAACGTCCC Run BLAST on NCBI protein sequence of TCONS_00050999-protein >TCONS_00050999-protein ID=TCONS_00050999-protein|Name=TCONS_00050999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
QRKIQHLPPKIPAPILNADGTRYLKFSETYGKIPTSEKDYPSLSATSNIE
KSRPRYRLLANXVVATLFSHQCGKARCVFSLDGKISTKGEREIEDVIFTC
GMALTSGSVYTATGLTCRSNIENAYYPSHPSKTNLICYYCGGDHILTTSY
NQKKKLFRTVYPLCSICSPSGKKKFGLYH Run BLAST on NCBI transcript from alignment at scaffold_191:45849..47001+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050999 ID=TCONS_00050999|Name=TCONS_00050999|organism=Clytia hemisphaerica|type=transcript|length=1153bp|location=Sequence derived from alignment at scaffold_191:45849..47001+ (Clytia hemisphaerica)
CAACGGAAGATTCAACATCTCCCTCCAAAAATACCAGCCCCTATCTTGAA
TGCTGATGGGACCAGGTATCTCAAATTCAGTGAAACGTACGGAAAAATTC
CAACGTCGGAAAAAGATTATCCGTCTTTGAGTGCTACATCTAACATCGAG
AAATCGAGGCCAAGGTATCGATTACTGGCCAATANGTGCTACATCTAAGA
TCGCGAAATCGAGGCCAAGGTATCGATTACTGGCCAATAGAGTGGTTGCG
ACTTTATTTAGTCACCAATGTGGCAAAGCACGATGTGTGTTCAGCCTCGA
TGGGAAGATTTCTACAAAGGGAGAGCGCGAGATTGAAGACGTAATTTTCA
CCTGTGGGATGGCTTTAACAAGTGGTTCAGTTTACACAGCGACTGGATTA
ACTTGTCGATCAAATATCGAAAACGCCTATTATCCGTCTCATCCCTCGAA
AACAAATCTGATTTGCTATTATTGTGGCGGAGACCACATCTTGACGACAA
GCTACAACCAAAAGAAGAAGCTTTTCAGGACGGTGTACCCTCTTTGCAGT
ATTTGCAGTCCCTCTgggaaaaagaaatttgggCTGTACCATTGAACAAC
AAGCGAAAAGCAACTGCCGCATCCGACAAGGCTGCACAGTCAAATCAAGA
TCGCAACAAGTCTACAGCTACACCATTAAATCAAACCATCAACAAGTCTA
CTGCATCAAACCAAAAGGAGAACGAGGCTACACTGTCAAATAGAAACAAA
GACAAATCAAAGGTCAATCTGTTTACATCTCGATTCTCGTACACCAAAAA
AGCTTCAATTCGCAAAAGTCCCGCCAACAAATCCAAGACAAAAAGTACCA
TTGTCAACAGTGTTAACAAAGAAGCAGTCCCTGTAGATAACGCCAGCAAT
GGGACGACCCCAATCCAAAACGTCAATAAGGAATCGACCCAAAACAACAG
CGTCAACAAAGAAGCCCTTGTCAACACCGTCAACAATGAAACGACCCCGA
TCAACATCGTCAACAATGAAACGTCCCCGATCAACATCGTCAACAATGAA
ACGACTCCAATCAGCATCAACGTCAACAATGAAACGTCCCCGATCAACAT
CGTCAACAATGAAACGACTCCAATCAGCATCAACGTAAACAATGAAACGT
CCC Coding sequence (CDS) from alignment at scaffold_191:45849..47001+ >TCONS_00050999 ID=TCONS_00050999|Name=TCONS_00050999|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_191:45849..47001+ (Clytia hemisphaerica)
CAACGGAAGATTCAACATCTCCCTCCAAAAATACCAGCCCCTATCTTGAA
TGCTGATGGGACCAGGTATCTCAAATTCAGTGAAACGTACGGAAAAATTC
CAACGTCGGAAAAAGATTATCCGTCTTTGAGTGCTACATCTAACATCGAG
AAATCGAGGCCAAGGTATCGATTACTGGCCAATANAGTGGTTGCGACTTT
ATTTAGTCACCAATGTGGCAAAGCACGATGTGTGTTCAGCCTCGATGGGA
AGATTTCTACAAAGGGAGAGCGCGAGATTGAAGACGTAATTTTCACCTGT
GGGATGGCTTTAACAAGTGGTTCAGTTTACACAGCGACTGGATTAACTTG
TCGATCAAATATCGAAAACGCCTATTATCCGTCTCATCCCTCGAAAACAA
ATCTGATTTGCTATTATTGTGGCGGAGACCACATCTTGACGACAAGCTAC
AACCAAAAGAAGAAGCTTTTCAGGACGGTGTACCCTCTTTGCAGTATTTG
CAGTCCCTCTgggaaaaagaaatttgggCTGTACCATTGACAACGGAAGA
TTCAACATCTCCCTCCAAAAATACCAGCCCCTATCTTGAATGCTGATGGG
ACCAGGTATCTCAAATTCAGTGAAACGTACGGAAAAATTCCAACGTCGGA
AAAAGATTATCCGTCTTTGAGTGCTACATCTAACATCGAGAAATCGAGGC
CAAGGTATCGATTACTGGCCAATANAGTGGTTGCGACTTTATTTAGTCAC
CAATGTGGCAAAGCACGATGTGTGTTCAGCCTCGATGGGAAGATTTCTAC
AAAGGGAGAGCGCGAGATTGAAGACGTAATTTTCACCTGTGGGATGGCTT
TAACAAGTGGTTCAGTTTACACAGCGACTGGATTAACTTGTCGATCAAAT
ATCGAAAACGCCTATTATCCGTCTCATCCCTCGAAAACAAATCTGATTTG
CTATTATTGTGGCGGAGACCACATCTTGACGACAAGCTACAACCAAAAGA
AGAAGCTTTTCAGGACGGTGTACCCTCTTTGCAGTATTTGCAGTCCCTCT
gggaaaaagaaatttgggCTGTACCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050999-exon-scaffold_191-1491911889:45849..46033 | TCONS_00050999-exon-scaffold_191-1491911889:45849..46033 | Clytia hemisphaerica | exon |
| TCONS_00050999-exon-scaffold_191-1510915933:45849..46033 | TCONS_00050999-exon-scaffold_191-1510915933:45849..46033 | Clytia hemisphaerica | exon |
| TCONS_00050999-exon-scaffold_191-1575043694:45849..46033 | TCONS_00050999-exon-scaffold_191-1575043694:45849..46033 | Clytia hemisphaerica | exon |
| TCONS_00050999-exon-scaffold_191-1491911889:46089..47001 | TCONS_00050999-exon-scaffold_191-1491911889:46089..47001 | Clytia hemisphaerica | exon |
| TCONS_00050999-exon-scaffold_191-1510915933:46089..47001 | TCONS_00050999-exon-scaffold_191-1510915933:46089..47001 | Clytia hemisphaerica | exon |
| TCONS_00050999-exon-scaffold_191-1575043694:46089..47001 | TCONS_00050999-exon-scaffold_191-1575043694:46089..47001 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_191 | supercontig | scaffold_191:45849..47001 + |
Blast
The following BLAST results are available for this feature:
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