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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050996 ID=TCONS_00050996|Name=TCONS_00050996|organism=Clytia hemisphaerica|type=transcript|length=2069bp
AAACGAAGTATCTGTTAAGATTGGTTTGCTAACATTTAAAGATGGAAAAT
GGAAAAGGCAAGGAAGAAGATTGCCTGTATTGGTTCTAGACCGTGTAAAT
GCAACAGAATTAAAATCGAAAGCAGTTAAGAAGTTTGCAGAGCATGATCA
AAACTTTTGTTCGACAGAGGACTACATACTCCTTTATCATGATTATTCTG
AGATGGTGTATATACCTGGCACAATGAAAGCGTTTATCTTATCTGACTAT
AAAGAAAACTTAGGAGATCCGTACTCTAAAATAGTTTTCTTCTTAGTCCA
AGAAACTGACTTGGAAGAGTACACTTTATTCAAGAGATCATCATCAACAT
CAGGATCAGAAAGTGCTGAAGAGGGCCAAGGAAATGATGATGACGAGAAC
CAagaaaatgatgatgatgacacTATTTTTGGAGCTACTTCTAATGCTAG
AGATAGAACTTaccaaaatgacttttttgatgATGCTAATGAACTCTATA
ATAGTGGTGGATATAATCCTATCATCATAGATGGGGATGATGAAATGTTG
AATAATGAACACCTTTCTAACGCAACCCCACCACTCCTCAATACGGCTAG
TTCTGCTGTTCCACATGAGGTGAAAACCAACGATTTTGCAGAAAGAAATC
CACCATCCAATTTGATTTGAATTCTTCTAATGCATGTGCAGAAACCACCC
AAGAGAGTAAAACAACTCATTCTAGCGCAAGTACAACAACGCCAGAAGAA
GATGATACTCTTGATGGTAAACTTAAATCAATCAATGAAACTTTAAATCA
AACAAGTTCTTTCAAACTTGAAATCAGAAGAAATAAGGCTTGGCCTGACA
CCTTTCAGAAACTTAACCGTGCATTCAAAAAGTCGGTAACACCCTTTGAT
GTAACATTTATCGGGGAAGACGCTAGAGACAGAGGTGGACTTATAAGAGA
ATTCTTCACTGTTATTTTTGAGGACATCAAAAAGTATCTCCTTTGTGCTG
GTGCTGGTGACGGATATACATTCAAGCATGACATGGAACGCTTAAAGAGA
AAGGAATTCTATGTCCTCGGAAATTTACTTGGGTTAGCCATTTTATATGG
TTGTGCTGGTCCAAGATATCTGATGCCTGCAGtggtttcaaaaatctttt
ttcaaaaaatcacatttcaaCTCTTTATCCATGATGTACCAGATTTcgaa
attcagcaaaaattgaTCAAAGTTGACAATTCAAAAACTGAAACTGACTT
TCAAAAAGCCATTAATATTGATGAATTCCCAGAACGATTTGATGCTGTAT
CAAAATCATCAGTCAAGCTTGAAGAGAAAAATAGCTTCATCCAAAATATT
ATTGAACATTTCATTATTTGCAGATGCTCAGAAGAAATTCTTGATGTAGC
CAGTGGAATGGATATCCATGATTTGCATTCTGTTCTTTTATGTCATTCAG
AGGAAGTGTTTAGTGAATTTTCTCTTGgggaaaaatcaaaaccttCTTCA
GAGGatgttatcaaaatattttcagaaattgattATCATAAAGAATCTGA
GGAAATCAGAAAATTACAGGGAGATTTTTACTATAACATTACAAACTTTG
TCCAATCGATTGAGGACGAGCCATTCATTTTATCAGTCCTAAATATTGAC
GGAGAAAAggaaatcagtcagaaaaaagAAGTAACACTGTCTGACtttgt
aaaattcatttcagGATCTCGTTTTGTGTTGCCGTCAATGATTGGAAATT
GTAAATTGAAGTTTGCAATGCCAGATGAATGTGAAAAAGGTGAACGTGTC
TTTATCAGTATATGTCAACTGTTGTTCAAAATACCATTAAATGAGAGATA
TTGTGTAGACACTGAAGACTTTAATAGAGCCCTATTAGAGGATATATGTG
ATTCTCCAGGTTTCGGTAAAGAATGAGACTTATTTTTTATGTTAAAATTT
CTGTTATTTATTGTTGAATCTTAAGTTCATCAATATGGCttacttttttt
ctcaataacctttttgaaacattttcactCTATGATACCATCATCTGATG
TTtaaaatatagatttttt Run BLAST on NCBI protein sequence of TCONS_00050996-protein >TCONS_00050996-protein ID=TCONS_00050996-protein|Name=TCONS_00050996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MERLKRKEFYVLGNLLGLAILYGCAGPRYLMPAVVSKIFFQKITFQLFIH
DVPDFEIQQKLIKVDNSKTETDFQKAINIDEFPERFDAVSKSSVKLEEKN
SFIQNIIEHFIICRCSEEILDVASGMDIHDLHSVLLCHSEEVFSEFSLGE
KSKPSSEDVIKIFSEIDYHKESEEIRKLQGDFYYNITNFVQSIEDEPFIL
SVLNIDGEKEISQKKEVTLSDFVKFISGSRFVLPSMIGNCKLKFAMPDEC
EKGERVFISICQLLFKIPLNERYCVDTEDFNRALLEDICDSPGFGKE Run BLAST on NCBI transcript from alignment at scaffold_190:29535..31603 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050996 ID=TCONS_00050996|Name=TCONS_00050996|organism=Clytia hemisphaerica|type=transcript|length=2069bp|location=Sequence derived from alignment at scaffold_190:29535..31603 (Clytia hemisphaerica)
aaaaaatctatattttaAACATCAGATGATGGTATCATAGagtgaaaatg
tttcaaaaaggttattgagaaaaaaagtaaGCCATATTGATGAACTTAAG
ATTCAACAATAAATAACAGAAATTTTAACATAAAAAATAAGTCTCATTCT
TTACCGAAACCTGGAGAATCACATATATCCTCTAATAGGGCTCTATTAAA
GTCTTCAGTGTCTACACAATATCTCTCATTTAATGGTATTTTGAACAACA
GTTGACATATACTGATAAAGACACGTTCACCTTTTTCACATTCATCTGGC
ATTGCAAACTTCAATTTACAATTTCCAATCATTGACGGCAACACAAAACG
AGATCctgaaatgaattttacaaaGTCAGACAGTGTTACTTcttttttct
gactgatttccTTTTCTCCGTCAATATTTAGGACTGATAAAATGAATGGC
TCGTCCTCAATCGATTGGACAAAGTTTGTAATGTTATAGTAAAAATCTCC
CTGTAATTTTCTGATTTCCTCAGATTCTTTATGATaatcaatttctgaaa
atattttgataacatCCTCTGAAGaaggttttgatttttcccCAAGAGAA
AATTCACTAAACACTTCCTCTGAATGACATAAAAGAACAGAATGCAAATC
ATGGATATCCATTCCACTGGCTACATCAAGAATTTCTTCTGAGCATCTGC
AAATAATGAAATGTTCAATAATATTTTGGATGAAGCTATTTTTCTCTTCA
AGCTTGACTGATGATTTTGATACAGCATCAAATCGTTCTGGGAATTCATC
AATATTAATGGCTTTTTGAAAGTCAGTTTCAGTTTTTGAATTGTCAACTT
TGAtcaatttttgctgaatttcgAAATCTGGTACATCATGGATAAAGAGt
tgaaatgtgattttttgaaaaaagatttttgaaaccaCTGCAGGCATCAG
ATATCTTGGACCAGCACAACCATATAAAATGGCTAACCCAAGTAAATTTC
CGAGGACATAGAATTCCTTTCTCTTTAAGCGTTCCATGTCATGCTTGAAT
GTATATCCGTCACCAGCACCAGCACAAAGGAGATACTTTTTGATGTCCTC
AAAAATAACAGTGAAGAATTCTCTTATAAGTCCACCTCTGTCTCTAGCGT
CTTCCCCGATAAATGTTACATCAAAGGGTGTTACCGACTTTTTGAATGCA
CGGTTAAGTTTCTGAAAGGTGTCAGGCCAAGCCTTATTTCTTCTGATTTC
AAGTTTGAAAGAACTTGTTTGATTTAAAGTTTCATTGATTGATTTAAGTT
TACCATCAAGAGTATCATCTTCTTCTGGCGTTGTTGTACTTGCGCTAGAA
TGAGTTGTTTTACTCTCTTGGGTGGTTTCTGCACATGCATTAGAAGAATT
CAAATCAAATTGGATGGTGGATTTCTTTCTGCAAAATCGTTGGTTTTCAC
CTCATGTGGAACAGCAGAACTAGCCGTATTGAGGAGTGGTGGGGTTGCGT
TAGAAAGGTGTTCATTATTCAACATTTCATCATCCCCATCTATGATGATA
GGATTATATCCACCACTATTATAGAGTTCATTAGCATcatcaaaaaagtc
attttggtAAGTTCTATCTCTAGCATTAGAAGTAGCTCCAAAAATAgtgt
catcatcatcattttctTGGTTCTCGTCATCATCATTTCCTTGGCCCTCT
TCAGCACTTTCTGATCCTGATGTTGATGATGATCTCTTGAATAAAGTGTA
CTCTTCCAAGTCAGTTTCTTGGACTAAGAAGAAAACTATTTTAGAGTACG
GATCTCCTAAGTTTTCTTTATAGTCAGATAAGATAAACGCTTTCATTGTG
CCAGGTATATACACCATCTCAGAATAATCATGATAAAGGAGTATGTAGTC
CTCTGTCGAACAAAAGTTTTGATCATGCTCTGCAAACTTCTTAACTGCTT
TCGATTTTAATTCTGTTGCATTTACACGGTCTAGAACCAATACAGGCAAT
CTTCTTCCTTGCCTTTTCCATTTTCCATCTTTAAATGTTAGCAAACCAAT
CTTAACAGATACTTCGTTT Coding sequence (CDS) from alignment at scaffold_190:29535..31603 >TCONS_00050996 ID=TCONS_00050996|Name=TCONS_00050996|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at scaffold_190:29535..31603 (Clytia hemisphaerica)
TCATTCTTTACCGAAACCTGGAGAATCACATATATCCTCTAATAGGGCTC
TATTAAAGTCTTCAGTGTCTACACAATATCTCTCATTTAATGGTATTTTG
AACAACAGTTGACATATACTGATAAAGACACGTTCACCTTTTTCACATTC
ATCTGGCATTGCAAACTTCAATTTACAATTTCCAATCATTGACGGCAACA
CAAAACGAGATCctgaaatgaattttacaaaGTCAGACAGTGTTACTTct
tttttctgactgatttccTTTTCTCCGTCAATATTTAGGACTGATAAAAT
GAATGGCTCGTCCTCAATCGATTGGACAAAGTTTGTAATGTTATAGTAAA
AATCTCCCTGTAATTTTCTGATTTCCTCAGATTCTTTATGATaatcaatt
tctgaaaatattttgataacatCCTCTGAAGaaggttttgatttttcccC
AAGAGAAAATTCACTAAACACTTCCTCTGAATGACATAAAAGAACAGAAT
GCAAATCATGGATATCCATTCCACTGGCTACATCAAGAATTTCTTCTGAG
CATCTGCAAATAATGAAATGTTCAATAATATTTTGGATGAAGCTATTTTT
CTCTTCAAGCTTGACTGATGATTTTGATACAGCATCAAATCGTTCTGGGA
ATTCATCAATATTAATGGCTTTTTGAAAGTCAGTTTCAGTTTTTGAATTG
TCAACTTTGAtcaatttttgctgaatttcgAAATCTGGTACATCATGGAT
AAAGAGttgaaatgtgattttttgaaaaaagatttttgaaaccaCTGCAG
GCATCAGATATCTTGGACCAGCACAACCATATAAAATGGCTAACCCAAGT
AAATTTCCGAGGACATAGAATTCCTTTCTCTTTAAGCGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050996-exon-scaffold_190-1491911889:29535..31603 | TCONS_00050996-exon-scaffold_190-1491911889:29535..31603 | Clytia hemisphaerica | exon |
| TCONS_00050996-exon-scaffold_190-1510915933:29535..31603 | TCONS_00050996-exon-scaffold_190-1510915933:29535..31603 | Clytia hemisphaerica | exon |
| TCONS_00050996-exon-scaffold_190-1575043694:29535..31603 | TCONS_00050996-exon-scaffold_190-1575043694:29535..31603 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_190 | supercontig | scaffold_190:29535..31603 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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