TCONS_00050996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050996
Unique NameTCONS_00050996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2069

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050996 ID=TCONS_00050996|Name=TCONS_00050996|organism=Clytia hemisphaerica|type=transcript|length=2069bp
AAACGAAGTATCTGTTAAGATTGGTTTGCTAACATTTAAAGATGGAAAAT
GGAAAAGGCAAGGAAGAAGATTGCCTGTATTGGTTCTAGACCGTGTAAAT
GCAACAGAATTAAAATCGAAAGCAGTTAAGAAGTTTGCAGAGCATGATCA
AAACTTTTGTTCGACAGAGGACTACATACTCCTTTATCATGATTATTCTG
AGATGGTGTATATACCTGGCACAATGAAAGCGTTTATCTTATCTGACTAT
AAAGAAAACTTAGGAGATCCGTACTCTAAAATAGTTTTCTTCTTAGTCCA
AGAAACTGACTTGGAAGAGTACACTTTATTCAAGAGATCATCATCAACAT
CAGGATCAGAAAGTGCTGAAGAGGGCCAAGGAAATGATGATGACGAGAAC
CAagaaaatgatgatgatgacacTATTTTTGGAGCTACTTCTAATGCTAG
AGATAGAACTTaccaaaatgacttttttgatgATGCTAATGAACTCTATA
ATAGTGGTGGATATAATCCTATCATCATAGATGGGGATGATGAAATGTTG
AATAATGAACACCTTTCTAACGCAACCCCACCACTCCTCAATACGGCTAG
TTCTGCTGTTCCACATGAGGTGAAAACCAACGATTTTGCAGAAAGAAATC
CACCATCCAATTTGATTTGAATTCTTCTAATGCATGTGCAGAAACCACCC
AAGAGAGTAAAACAACTCATTCTAGCGCAAGTACAACAACGCCAGAAGAA
GATGATACTCTTGATGGTAAACTTAAATCAATCAATGAAACTTTAAATCA
AACAAGTTCTTTCAAACTTGAAATCAGAAGAAATAAGGCTTGGCCTGACA
CCTTTCAGAAACTTAACCGTGCATTCAAAAAGTCGGTAACACCCTTTGAT
GTAACATTTATCGGGGAAGACGCTAGAGACAGAGGTGGACTTATAAGAGA
ATTCTTCACTGTTATTTTTGAGGACATCAAAAAGTATCTCCTTTGTGCTG
GTGCTGGTGACGGATATACATTCAAGCATGACATGGAACGCTTAAAGAGA
AAGGAATTCTATGTCCTCGGAAATTTACTTGGGTTAGCCATTTTATATGG
TTGTGCTGGTCCAAGATATCTGATGCCTGCAGtggtttcaaaaatctttt
ttcaaaaaatcacatttcaaCTCTTTATCCATGATGTACCAGATTTcgaa
attcagcaaaaattgaTCAAAGTTGACAATTCAAAAACTGAAACTGACTT
TCAAAAAGCCATTAATATTGATGAATTCCCAGAACGATTTGATGCTGTAT
CAAAATCATCAGTCAAGCTTGAAGAGAAAAATAGCTTCATCCAAAATATT
ATTGAACATTTCATTATTTGCAGATGCTCAGAAGAAATTCTTGATGTAGC
CAGTGGAATGGATATCCATGATTTGCATTCTGTTCTTTTATGTCATTCAG
AGGAAGTGTTTAGTGAATTTTCTCTTGgggaaaaatcaaaaccttCTTCA
GAGGatgttatcaaaatattttcagaaattgattATCATAAAGAATCTGA
GGAAATCAGAAAATTACAGGGAGATTTTTACTATAACATTACAAACTTTG
TCCAATCGATTGAGGACGAGCCATTCATTTTATCAGTCCTAAATATTGAC
GGAGAAAAggaaatcagtcagaaaaaagAAGTAACACTGTCTGACtttgt
aaaattcatttcagGATCTCGTTTTGTGTTGCCGTCAATGATTGGAAATT
GTAAATTGAAGTTTGCAATGCCAGATGAATGTGAAAAAGGTGAACGTGTC
TTTATCAGTATATGTCAACTGTTGTTCAAAATACCATTAAATGAGAGATA
TTGTGTAGACACTGAAGACTTTAATAGAGCCCTATTAGAGGATATATGTG
ATTCTCCAGGTTTCGGTAAAGAATGAGACTTATTTTTTATGTTAAAATTT
CTGTTATTTATTGTTGAATCTTAAGTTCATCAATATGGCttacttttttt
ctcaataacctttttgaaacattttcactCTATGATACCATCATCTGATG
TTtaaaatatagatttttt
Run BLAST on NCBI

protein sequence of TCONS_00050996-protein

>TCONS_00050996-protein ID=TCONS_00050996-protein|Name=TCONS_00050996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MERLKRKEFYVLGNLLGLAILYGCAGPRYLMPAVVSKIFFQKITFQLFIH
DVPDFEIQQKLIKVDNSKTETDFQKAINIDEFPERFDAVSKSSVKLEEKN
SFIQNIIEHFIICRCSEEILDVASGMDIHDLHSVLLCHSEEVFSEFSLGE
KSKPSSEDVIKIFSEIDYHKESEEIRKLQGDFYYNITNFVQSIEDEPFIL
SVLNIDGEKEISQKKEVTLSDFVKFISGSRFVLPSMIGNCKLKFAMPDEC
EKGERVFISICQLLFKIPLNERYCVDTEDFNRALLEDICDSPGFGKE
Run BLAST on NCBI

transcript from alignment at scaffold_190:29535..31603

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050996 ID=TCONS_00050996|Name=TCONS_00050996|organism=Clytia hemisphaerica|type=transcript|length=2069bp|location=Sequence derived from alignment at scaffold_190:29535..31603 (Clytia hemisphaerica)
aaaaaatctatattttaAACATCAGATGATGGTATCATAGagtgaaaatg tttcaaaaaggttattgagaaaaaaagtaaGCCATATTGATGAACTTAAG ATTCAACAATAAATAACAGAAATTTTAACATAAAAAATAAGTCTCATTCT TTACCGAAACCTGGAGAATCACATATATCCTCTAATAGGGCTCTATTAAA GTCTTCAGTGTCTACACAATATCTCTCATTTAATGGTATTTTGAACAACA GTTGACATATACTGATAAAGACACGTTCACCTTTTTCACATTCATCTGGC ATTGCAAACTTCAATTTACAATTTCCAATCATTGACGGCAACACAAAACG AGATCctgaaatgaattttacaaaGTCAGACAGTGTTACTTcttttttct gactgatttccTTTTCTCCGTCAATATTTAGGACTGATAAAATGAATGGC TCGTCCTCAATCGATTGGACAAAGTTTGTAATGTTATAGTAAAAATCTCC CTGTAATTTTCTGATTTCCTCAGATTCTTTATGATaatcaatttctgaaa atattttgataacatCCTCTGAAGaaggttttgatttttcccCAAGAGAA AATTCACTAAACACTTCCTCTGAATGACATAAAAGAACAGAATGCAAATC ATGGATATCCATTCCACTGGCTACATCAAGAATTTCTTCTGAGCATCTGC AAATAATGAAATGTTCAATAATATTTTGGATGAAGCTATTTTTCTCTTCA AGCTTGACTGATGATTTTGATACAGCATCAAATCGTTCTGGGAATTCATC AATATTAATGGCTTTTTGAAAGTCAGTTTCAGTTTTTGAATTGTCAACTT TGAtcaatttttgctgaatttcgAAATCTGGTACATCATGGATAAAGAGt tgaaatgtgattttttgaaaaaagatttttgaaaccaCTGCAGGCATCAG ATATCTTGGACCAGCACAACCATATAAAATGGCTAACCCAAGTAAATTTC CGAGGACATAGAATTCCTTTCTCTTTAAGCGTTCCATGTCATGCTTGAAT GTATATCCGTCACCAGCACCAGCACAAAGGAGATACTTTTTGATGTCCTC AAAAATAACAGTGAAGAATTCTCTTATAAGTCCACCTCTGTCTCTAGCGT CTTCCCCGATAAATGTTACATCAAAGGGTGTTACCGACTTTTTGAATGCA CGGTTAAGTTTCTGAAAGGTGTCAGGCCAAGCCTTATTTCTTCTGATTTC AAGTTTGAAAGAACTTGTTTGATTTAAAGTTTCATTGATTGATTTAAGTT TACCATCAAGAGTATCATCTTCTTCTGGCGTTGTTGTACTTGCGCTAGAA TGAGTTGTTTTACTCTCTTGGGTGGTTTCTGCACATGCATTAGAAGAATT CAAATCAAATTGGATGGTGGATTTCTTTCTGCAAAATCGTTGGTTTTCAC CTCATGTGGAACAGCAGAACTAGCCGTATTGAGGAGTGGTGGGGTTGCGT TAGAAAGGTGTTCATTATTCAACATTTCATCATCCCCATCTATGATGATA GGATTATATCCACCACTATTATAGAGTTCATTAGCATcatcaaaaaagtc attttggtAAGTTCTATCTCTAGCATTAGAAGTAGCTCCAAAAATAgtgt catcatcatcattttctTGGTTCTCGTCATCATCATTTCCTTGGCCCTCT TCAGCACTTTCTGATCCTGATGTTGATGATGATCTCTTGAATAAAGTGTA CTCTTCCAAGTCAGTTTCTTGGACTAAGAAGAAAACTATTTTAGAGTACG GATCTCCTAAGTTTTCTTTATAGTCAGATAAGATAAACGCTTTCATTGTG CCAGGTATATACACCATCTCAGAATAATCATGATAAAGGAGTATGTAGTC CTCTGTCGAACAAAAGTTTTGATCATGCTCTGCAAACTTCTTAACTGCTT TCGATTTTAATTCTGTTGCATTTACACGGTCTAGAACCAATACAGGCAAT CTTCTTCCTTGCCTTTTCCATTTTCCATCTTTAAATGTTAGCAAACCAAT CTTAACAGATACTTCGTTT

Coding sequence (CDS) from alignment at scaffold_190:29535..31603

>TCONS_00050996 ID=TCONS_00050996|Name=TCONS_00050996|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at scaffold_190:29535..31603 (Clytia hemisphaerica)
TCATTCTTTACCGAAACCTGGAGAATCACATATATCCTCTAATAGGGCTC
TATTAAAGTCTTCAGTGTCTACACAATATCTCTCATTTAATGGTATTTTG
AACAACAGTTGACATATACTGATAAAGACACGTTCACCTTTTTCACATTC
ATCTGGCATTGCAAACTTCAATTTACAATTTCCAATCATTGACGGCAACA
CAAAACGAGATCctgaaatgaattttacaaaGTCAGACAGTGTTACTTct
tttttctgactgatttccTTTTCTCCGTCAATATTTAGGACTGATAAAAT
GAATGGCTCGTCCTCAATCGATTGGACAAAGTTTGTAATGTTATAGTAAA
AATCTCCCTGTAATTTTCTGATTTCCTCAGATTCTTTATGATaatcaatt
tctgaaaatattttgataacatCCTCTGAAGaaggttttgatttttcccC
AAGAGAAAATTCACTAAACACTTCCTCTGAATGACATAAAAGAACAGAAT
GCAAATCATGGATATCCATTCCACTGGCTACATCAAGAATTTCTTCTGAG
CATCTGCAAATAATGAAATGTTCAATAATATTTTGGATGAAGCTATTTTT
CTCTTCAAGCTTGACTGATGATTTTGATACAGCATCAAATCGTTCTGGGA
ATTCATCAATATTAATGGCTTTTTGAAAGTCAGTTTCAGTTTTTGAATTG
TCAACTTTGAtcaatttttgctgaatttcgAAATCTGGTACATCATGGAT
AAAGAGttgaaatgtgattttttgaaaaaagatttttgaaaccaCTGCAG
GCATCAGATATCTTGGACCAGCACAACCATATAAAATGGCTAACCCAAGT
AAATTTCCGAGGACATAGAATTCCTTTCTCTTTAAGCGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032328XLOC_032328Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050996-proteinTCONS_00050996-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050996-exon-scaffold_190-1491911889:29535..31603TCONS_00050996-exon-scaffold_190-1491911889:29535..31603Clytia hemisphaericaexon
TCONS_00050996-exon-scaffold_190-1510915933:29535..31603TCONS_00050996-exon-scaffold_190-1510915933:29535..31603Clytia hemisphaericaexon
TCONS_00050996-exon-scaffold_190-1575043694:29535..31603TCONS_00050996-exon-scaffold_190-1575043694:29535..31603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_190supercontigscaffold_190:29535..31603 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0190741 0.148802 0.151779 0.211289 5.3798 3.4557 2.84066 2.80708 0.986135 1.22276 0.907876 0.515428 0.461471 0.468891 0 0.0697392 0.0143188 0 0 0 0 0.0269859 0.0437399 0 0.20479 0.668919 0 0.0558252 0.0211707 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004842 ubiquitin-protein transferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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