|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050994 ID=TCONS_00050994|Name=TCONS_00050994|organism=Clytia hemisphaerica|type=transcript|length=2423bpRun BLAST on NCBI transcript from alignment at scaffold_190:41349..55055- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050994 ID=TCONS_00050994|Name=TCONS_00050994|organism=Clytia hemisphaerica|type=transcript|length=13707bp|location=Sequence derived from alignment at scaffold_190:41349..55055- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050994 vs. Swiss-Prot (Human)
Match: CFA52 (Cilia- and flagella-associated protein 52 OS=Homo sapiens GN=CFAP52 PE=1 SV=3) HSP 1 Score: 748.043 bits (1930), Expect = 0.000e+0 Identity = 345/618 (55.83%), Postives = 470/618 (76.05%), Query Frame = 3
Query: 114 KMVETADLDQLELDSTIGFAGNVPGGLLAHPNKKHLIYPLGNTIVVKNIATGSQKFLSGHTDNVSCVALSKSGQYVASGQSTYMGFKADVIVWDFESMSLYCRLVLHKVKVEALAFSPNEQYLATLGGQDDGSVVIWDLPRKEAVCGSPAAVPSAGTTYCVAFAXXXXXIFVTGGNKTLRVWDLDSENRIIRPTDCNMGQLKRIVKCIQVSDDDKHIYCGTTSGDILQINLNTKLLCHYGPAKEKFSLGVLSLSLVEQN-ILIGAGDGTVAKVRVDGFKKLKSKKVDGEVTSITAPAGNLEKFFVGTQLSQIYQFNFSTFVEETISTCHYSSVKDISFPYNYSDVFATCSKNDIRVWNAKSSKELLRVVVPNMTCNAVDFFRDGKSIISAWDDGKIRVFTPESGKLRFIIHDAHNKGVTAIASTSTSKRIISGGGEGEVRVWDVNDKEYQMTRAMKEHKGAVTCIKVRSKDQQCVTSSTDGTCIIWDLERYVRNQIIFANTMFKVVCYRPDESQIITSGTDKNIGYWETYDGSQIRELVGTKSGAINGMDVSPDGSYFVTGGEDKLLKVWRYNEGDAQQVGIGHSGEITRLKICPNQRHIVSVSADGAVLRWKFPFPS 1964
K+ A + +LELD+ IGF G+VP GL HP+++H+IYPLG T++++ I T Q FL GH +NVSC+A+S+SG+Y+ASGQ T+MGFKAD+I+WD+++ L RL LHK K+EALAFSPN+ YL +LGG DDGSVV+W + +++A+CGSPAA + G V F+ + +F+T GN T+RVW+LD NR I PT+C GQLKRIV I V DDD Y GTT+GDIL++N TKLL GPAK+KFSLGV ++ ++ +L+G+G G + + G+K +K ++ G +TSIT G +F VGT+ S IY+ +F+ F E I+TCH+ +V+DI FP+ +++FATC+K DIRVW+ S++ELLR+ VPNMTC+ +DF RDGKSIISAW+DGKIR F PE+G+L ++I++AH GVTAIA+TS KR+ISGGGEGEVRVW + + ++ A+KEHK +V+CI+V+ +++CVT+STDGTCIIWDL R RNQ+I ANT+F+ VCY P+E QIITSGTD+ I YWE +DG+ IREL G+ SG+INGMD++ +G +FVTGG D L+KVW YNEG+ VG+GHSG ITR++I P ++IVSVSADGA+LRWK+P+ S
Sbjct: 4 KISPEAQVAELELDAVIGFNGHVPTGLKCHPDQEHMIYPLGCTVLIQAINTKEQNFLQGHGNNVSCLAISRSGEYIASGQVTFMGFKADIILWDYKNRELLARLSLHKGKIEALAFSPNDLYLVSLGGPDDGSVVVWSIAKRDAICGSPAAGLNVGNATNVIFSRCRDEMFMTAGNGTIRVWELDLPNRKIWPTECQTGQLKRIVMSIGVDDDDSFFYLGTTTGDILKMNPRTKLLTDVGPAKDKFSLGVSAIRCLKMGGLLVGSGAGLLVFCKSPGYKPIKKIQLQGGITSITL-RGEGHQFLVGTEESHIYRVSFTDFKETLIATCHFDAVEDIVFPFGTAELFATCAKKDIRVWHTSSNRELLRITVPNMTCHGIDFMRDGKSIISAWNDGKIRAFAPETGRLMYVINNAHRIGVTAIATTSDCKRVISGGGEGEVRVWQIGCQTQKLEEALKEHKSSVSCIRVKRNNEECVTASTDGTCIIWDLVRLRRNQMILANTLFQCVCYHPEEFQIITSGTDRKIAYWEVFDGTVIRELEGSLSGSINGMDITQEGVHFVTGGNDHLVKVWDYNEGEVTHVGVGHSGNITRIRISPGNQYIVSVSADGAILRWKYPYTS 620 The following BLAST results are available for this feature:
BLAST of TCONS_00050994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.