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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050990 ID=TCONS_00050990|Name=TCONS_00050990|organism=Clytia hemisphaerica|type=transcript|length=1315bp
TTTTTTTCTCGCAAAGACAGTACTAGTATATGAAAGATTATCGTTGAACG
AGGAAGAATAAAGATGCATCAAAACAAATCATCatcaactttcttttttc
tGGCAATTTTAACGATCGttgatttgtcttttttagAGGCTAAAAATAAA
TGCATAaaaggaATACCAGAAAATATCCATGGAGCTAAGCCACAAATATT
GATCAAAGAAATGAAAGCCAGATCTGGTGGATTTATTACAAGCATTGCAC
GGCAGTCTACCGAATGGGAAATCTCTTTCACCGTCAATTTTCATAGCTTT
GGAAAAAACGAATCTGACTGGCATAATATTTTTATCATCACAAACCACGG
TAGCAGGCAATCATATGGTATTCGTTCCCCATTAGTCACCACACAAAATT
CAATGCTTCAAATCTCATCTGCTGTCAACTCAAATTATGACCATAAATAT
CTGAAATACGGGCTGGTCATCAACAAGCCGTACATGATCAAGATTAGCCA
ATACTATATTGCAAATGGTCAATATAAATACCGAATTGAATTAGATGGCG
AAGAAGTACATAACACACTCAACAATGATGCCAGACAATTTTATGATATG
AAGTTCTATCTTTTGCGAACGAATGGTGCAGATTGTGACGTCTctgattt
caaatttgtaaatttcttaTGAAAACTCTAAACCTTTAACTAGAGATTAT
TGCTAAATAGCATACTTTATTGTTAAATAAGCATACAATTNTATGAAGTT
CTATCTTTTGCGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaat
ttgtaaatttcttaTGAAAACATTTAACATTTAACTGGAAAAGGACGCTG
CTGGTTATGTGTAAACTATTATAAGTTTatcattaaaattaaaattaata
gTGTAAATTATTGTAACTTTTTGCCTTGGCacttatttttgaattttgat
tcatTACAGGGAATGAGGAGTTTTGTAAAGATTTGGCTAGATAAATTTCA
AACCTTTAATTTAACCGGTGAGATAATTTAATTAGTGATATTCAGTAAGT
AAAGTTTTCAACGGAAACATctcggtttttgccagtagtggcaattCAAG
CTAGGGACAATTTGTTTAGAATTTGCAACTAATGAGGAGAACCAGGGTGT
TTCCaaagaaaacattacgtaatgaatattATGAATTAAGTAATCTCACC
GGCTGAATCGATAACCGTGTATCCAGTGTCTACAGTAGaatctcgcttat
tcgaacttccatcattcgaatctttctatatttCGATATAATTCCCAATC
Cccatcaaggagaaa Run BLAST on NCBI protein sequence of TCONS_00050990-protein >TCONS_00050990-protein ID=TCONS_00050990-protein|Name=TCONS_00050990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MHQNKSSSTFFFLAILTIVDLSFLEAKNKCIKGIPENIHGAKPQILIKEM
KARSGGFITSIARQSTEWEISFTVNFHSFGKNESDWHNIFIITNHGSRQS
YGIRSPLVTTQNSMLQISSAVNSNYDHKYLKYGLVINKPYMIKISQYYIA
NGQYKYRIELDGEEVHNTLNNDARQFYDMKFYLLRTNGADCDVSDFKFVN
FL Run BLAST on NCBI transcript from alignment at scaffold_190:38291..41240+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050990 ID=TCONS_00050990|Name=TCONS_00050990|organism=Clytia hemisphaerica|type=transcript|length=2950bp|location=Sequence derived from alignment at scaffold_190:38291..41240+ (Clytia hemisphaerica)
TTTTTTTCTCGCAAAGACAGTACTAGTATATGAAAGATTATCGTTGAACG
AGGAAGAATAAAGATGCATCAAAACAAATCATCatcaactttcttttttc
tGGCAATTTTAACGATCGttgatttgtcttttttagAGGCTAAAAATAAA
TGCATAGTAAGTacaaatactcaaaaaataccGGACACAAGCCAATTCCT
GGTAAAGCAGTATGGTGTCCGCTAGCTTTTTTCATCTgctggtgtttttt
tataaaagagctgtactctcgggtacctataatagccgtccccccgctaa
ataatttttcgaaagttttgcacccaagacattcttattccagccCCTTC
CCcacttattgatttttgagagttttccgatccccctgcttattccaatc
tccccggctattaggtacccgagagtatataACAAGATTTTGCTGATTTC
AAGCAAAGGCATACATCACtgtgaatttgattattttcaatccaaatttt
ttttctagaaaggaATACCAGAAAATATCCATGGAGCTAAGCCACAAATA
TTGATCAAAGGTAAAATGGACCGTTCGAGAAAAATTTtggtacatggggg
tggaggatatattggatattttgtacGGGGGGGTAGTGAAATATCGGCGA
AATTTGCCTTATTTGGgggcaaacttgctctgttttGATAGTTTTGAATC
TCTGGGAGGTCAACTGATGCTTACCCGGGGGATCATAATTCACAAAGTAA
AGGGTAAAGGgagtaaatttcaaaaaaatttcatatccTCTAGCCCCCAT
ATTAATTTTTTCTTGGAGAGGCCAATAAATATTTTCTGAAAAGATGAAGG
AGAGAGAAAAATCTTAAACCCTTCCCATGCAAGCAAAGTGAAAGCTTCTT
AGAACTtgctaccgtgaaaagcacagctcaaaatcatatatttacgctgt
gccgacgaatcgagattctattcatcgcgcaatcagcgaagacaaaagta
accatgacgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNaaacataaagtctgtctattatttcgattcaattaaagtg
acatttccataattaaaagtttagtaattactgttatacatttggggatc
atgtaaaagatttctttcgaaataaactcatttcaactacacttggaggt
ttctggggaattcgtaaatagtaaactgcatactgatacagtctgttaga
cattaatatggtaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcagtgattagattgacacatg
cgcgataaaatttctattatttgtcttcagaggttactattttctttgaa
aacttaacctctgatactcagggtaagaaCTTGCTCTTGATCGTCAAATC
CTAATATTCTTATATAGcttctatttaaaaaaatgtacatACTCTGAAAG
CCATTTACTTAGCCGGTCTATAGGATAAATTTTCCTGTCTTAGAAATGAA
AGCCAGATCTGGTGGATTTATTACAAGCATTGCACGGCAGTCTACCGAAT
GGGAAATCTCTTTCACCGTCAATTTTCATAGCTTTGGAAAAAACGAATCT
GACTGGCATAATATTTTTATCATCACAAACCACGGTAGCAGGCAATCATA
TGGTATTCGTTCCCCATTAGTCACCACACAAAATTCAATGCTTCAAATCT
CATCTGCTGTCAACTCAAATTATGACCATAAATATCTGAAATACGGGCTG
GTCATCAACAAGCCGTACATGATCAAGATTAGCCAATACTATATTGCAAA
TGGTCAATATAAATACCGAATTGAATTAGATGGCGAAGAAGTACATAACA
CACTCAACAATGATGCCAGACAATTTTATGATATGAAGTTCTATCTTTTG
CGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaatttgtaaattt
cttaTGAAAACTCTAAACCTTTAACTAGAGATTATTGCTAAATAGCATAC
TTTATTGTTAAATAAGCATACAATTNTATGAAGTTCTATCTTTTGCGAAC
GAATGGTGCAGATTGTGACGTCTctgatttcaaatttgtaaatttcttaT
GAAAACATTTAACATTTAACTGGAAAAGGACGCTGCTGGTTATGTGTAAA
CTATTATAAGTTTatcattaaaattaaaattaatagTGTAAATTATTGTA
ACTTTTTGCCTTGGCacttatttttgaattttgattcatTACAGGGAATG
AGGAGTTTTGTAAAGATTTGGCTAGATAAATTTCAAACCTTTAATTTAAC
CGGTGAGATAATTTAATTAGTGATATTCAGTAAGTAAAGTTTTCAACGGA
AACATctcggtttttgccagtagtggcaattCAAGCTAGGGACAATTTGT
TTAGAATTTGCAACTAATGAGGAGAACCAGGGTGTTTCCaaagaaaacat
tacgtaatgaatattATGAATTAAGTAATCTCACCGGCTGAATCGATAAC
CGTGTATCCAGTGTCTACAGTAGaatctcgcttattcgaacttccatcat
tcgaatctttctatatttCGATATAATTCCCAATCCccatcaaggagaaa
Coding sequence (CDS) from alignment at scaffold_190:38291..41240+ >TCONS_00050990 ID=TCONS_00050990|Name=TCONS_00050990|organism=Clytia hemisphaerica|type=CDS|length=1827bp|location=Sequence derived from alignment at scaffold_190:38291..41240+ (Clytia hemisphaerica)
ATGCATCAAAACAAATCATCatcaactttcttttttctGGCAATTTTAAC
GATCGttgatttgtcttttttagAGGCTAAAAATAAATGCATAaaaggaA
TACCAGAAAATATCCATGGAGCTAAGCCACAAATATTGATCAAAGAAATG
AAAGCCAGATCTGGTGGATTTATTACAAGCATTGCACGGCAGTCTACCGA
ATGGGAAATCTCTTTCACCGTCAATTTTCATAGCTTTGGAAAAAACGAAT
CTGACTGGCATAATATTTTTATCATCACAAACCACGGTAGCAGGCAATCA
TATGGTATTCGTTCCCCATTAGTCACCACACAAAATTCAATGCTTCAAAT
CTCATCTGCTGTCAACTCAAATTATGACCATAAATATCTGAAATACGGGC
TGGTCATCAACAAGCCGTACATGATCAAGATTAGCCAATACTATATTGCA
AATGGTCAATATAAATACCGAATTGAATTAGATGGCGAAGAAGTACATAA
CACACTCAACAATGATGCCAGACAATTTTATGATATGAAGTTCTATCTTT
TGCGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaatttgtaaat
ttcttaTGAATGCATCAAAACAAATCATCatcaactttcttttttctGGC
AATTTTAACGATCGttgatttgtcttttttagAGGCTAAAAATAAATGCA
TAaaaggaATACCAGAAAATATCCATGGAGCTAAGCCACAAATATTGATC
AAAGAAATGAAAGCCAGATCTGGTGGATTTATTACAAGCATTGCACGGCA
GTCTACCGAATGGGAAATCTCTTTCACCGTCAATTTTCATAGCTTTGGAA
AAAACGAATCTGACTGGCATAATATTTTTATCATCACAAACCACGGTAGC
AGGCAATCATATGGTATTCGTTCCCCATTAGTCACCACACAAAATTCAAT
GCTTCAAATCTCATCTGCTGTCAACTCAAATTATGACCATAAATATCTGA
AATACGGGCTGGTCATCAACAAGCCGTACATGATCAAGATTAGCCAATAC
TATATTGCAAATGGTCAATATAAATACCGAATTGAATTAGATGGCGAAGA
AGTACATAACACACTCAACAATGATGCCAGACAATTTTATGATATGAAGT
TCTATCTTTTGCGAACGAATGGTGCAGATTGTGACGTCTctgatttcaaa
tttgtaaatttcttaTGAATGCATCAAAACAAATCATCatcaactttctt
ttttctGGCAATTTTAACGATCGttgatttgtcttttttagAGGCTAAAA
ATAAATGCATAaaaggaATACCAGAAAATATCCATGGAGCTAAGCCACAA
ATATTGATCAAAGAAATGAAAGCCAGATCTGGTGGATTTATTACAAGCAT
TGCACGGCAGTCTACCGAATGGGAAATCTCTTTCACCGTCAATTTTCATA
GCTTTGGAAAAAACGAATCTGACTGGCATAATATTTTTATCATCACAAAC
CACGGTAGCAGGCAATCATATGGTATTCGTTCCCCATTAGTCACCACACA
AAATTCAATGCTTCAAATCTCATCTGCTGTCAACTCAAATTATGACCATA
AATATCTGAAATACGGGCTGGTCATCAACAAGCCGTACATGATCAAGATT
AGCCAATACTATATTGCAAATGGTCAATATAAATACCGAATTGAATTAGA
TGGCGAAGAAGTACATAACACACTCAACAATGATGCCAGACAATTTTATG
ATATGAAGTTCTATCTTTTGCGAACGAATGGTGCAGATTGTGACGTCTct
gatttcaaatttgtaaatttcttaTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050990-exon-scaffold_190-1491911889:38291..38446 | TCONS_00050990-exon-scaffold_190-1491911889:38291..38446 | Clytia hemisphaerica | exon |
| TCONS_00050990-exon-scaffold_190-1510915933:38291..38446 | TCONS_00050990-exon-scaffold_190-1510915933:38291..38446 | Clytia hemisphaerica | exon |
| TCONS_00050990-exon-scaffold_190-1575043694:38291..38446 | TCONS_00050990-exon-scaffold_190-1575043694:38291..38446 | Clytia hemisphaerica | exon |
| TCONS_00050990-exon-scaffold_190-1491911889:38799..38850 | TCONS_00050990-exon-scaffold_190-1491911889:38799..38850 | Clytia hemisphaerica | exon |
| TCONS_00050990-exon-scaffold_190-1510915933:38799..38850 | TCONS_00050990-exon-scaffold_190-1510915933:38799..38850 | Clytia hemisphaerica | exon |
| TCONS_00050990-exon-scaffold_190-1575043694:38799..38850 | TCONS_00050990-exon-scaffold_190-1575043694:38799..38850 | Clytia hemisphaerica | exon |
| TCONS_00050990-exon-scaffold_190-1491911889:40134..41240 | TCONS_00050990-exon-scaffold_190-1491911889:40134..41240 | Clytia hemisphaerica | exon |
| TCONS_00050990-exon-scaffold_190-1510915933:40134..41240 | TCONS_00050990-exon-scaffold_190-1510915933:40134..41240 | Clytia hemisphaerica | exon |
| TCONS_00050990-exon-scaffold_190-1575043694:40134..41240 | TCONS_00050990-exon-scaffold_190-1575043694:40134..41240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_190 | supercontig | scaffold_190:38291..41240 + |
Blast
The following BLAST results are available for this feature:
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