TCONS_00050975 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050975
Unique NameTCONS_00050975
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050975 ID=TCONS_00050975|Name=TCONS_00050975|organism=Clytia hemisphaerica|type=transcript|length=304bp
GTCATTTCAAAACATACTTAAAATGTCTTGACATAATTCTGCGTCACGCT
AAATAAAAGACTTTCCAACAAAACCTTGTTTGCTATATAAAGGGCTCTAG
AACAAGTTAAGGTATTCATACGAACACAGAACGCAATCGAAACTAGACAA
AGATAAAGTACTTACAATAAAGCAGCTTTAGATACCACCATAGATATACC
ATTAAATTCTATAAATCAGTTATTTTTAAGTGCAGATAAAGATGAGTAGC
ATGGCTCTGGTGGTAACTTTAACATTTTTGGCTTCATTGAACCAAATTGC
AGGT
Run BLAST on NCBI

transcript from alignment at scaffold_19:745296..745599

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050975 ID=TCONS_00050975|Name=TCONS_00050975|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at scaffold_19:745296..745599 (Clytia hemisphaerica)
ACCTGCAATTTGGTTCAATGAAGCCAAAAATGTTAAAGTTACCACCAGAG
CCATGCTACTCATCTTTATCTGCACTTAAAAATAACTGATTTATAGAATT
TAATGGTATATCTATGGTGGTATCTAAAGCTGCTTTATTGTAAGTACTTT
ATCTTTGTCTAGTTTCGATTGCGTTCTGTGTTCGTATGAATACCTTAACT
TGTTCTAGAGCCCTTTATATAGCAAACAAGGTTTTGTTGGAAAGTCTTTT
ATTTAGCGTGACGCAGAATTATGTCAAGACATTTTAAGTATGTTTTGAAA
TGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032316XLOC_032316Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050975-exon-scaffold_19-1491911889:745296..745599TCONS_00050975-exon-scaffold_19-1491911889:745296..745599Clytia hemisphaericaexon
TCONS_00050975-exon-scaffold_19-1510915933:745296..745599TCONS_00050975-exon-scaffold_19-1510915933:745296..745599Clytia hemisphaericaexon
TCONS_00050975-exon-scaffold_19-1575043694:745296..745599TCONS_00050975-exon-scaffold_19-1575043694:745296..745599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:745296..745599 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.503174	1.59046	0.479705	0	0	0.389462	0	0	4.96302	5.41185	0.42374	0.454738	3.9214	2.29675	5.15626	4.1505	2.52528	2.11156	0	1.16683	2.00302	0.357529	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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