TCONS_00050959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050959
Unique NameTCONS_00050959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050959 ID=TCONS_00050959|Name=TCONS_00050959|organism=Clytia hemisphaerica|type=transcript|length=508bp
CACCTGCAACTAAAAGTGAACGAAACACtcgtgaaaattttgaattatac
AGCTTTAATTTAACATCTTTTTTAACCATCTCAATAACTTAACTTTTTAG
AAAGCCTGGTGTTATAATTGTCATCCAGTAATTTCAATAAACATAACCTC
TTTGCATATGTCATATTCCTTGTGATGTTTTTGTAACAATTCAGTACATG
AAATGTTTGCTCACAGACTTCCGTATTCATCTTACGCACATCCTTAAATT
TAGGAAGATCGGGATGGTATTTACAGTCGTCACTACTGAGCACGCATTTC
GACTGCGTGTGTTTCTCAGCATGAAAAACGTCCACAATAAACATTAATTC
TTCAATTTCCTTGGCAAAAACATTCCCTTCCCTTGCTAATCTACAGACGT
ACGGGTGTAGATCACAGGATCTATCATAAACTATACCTTTCAAGTTTCCA
TTAAGATTTCCTTGAAATATATCAATTAACCCTGTAAACACCATTGATAG
ACTTTCAG
Run BLAST on NCBI

transcript from alignment at scaffold_19:435158..435665

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050959 ID=TCONS_00050959|Name=TCONS_00050959|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at scaffold_19:435158..435665 (Clytia hemisphaerica)
CTGAAAGTCTATCAATGGTGTTTACAGGGTTAATTGATATATTTCAAGGA
AATCTTAATGGAAACTTGAAAGGTATAGTTTATGATAGATCCTGTGATCT
ACACCCGTACGTCTGTAGATTAGCAAGGGAAGGGAATGTTTTTGCCAAGG
AAATTGAAGAATTAATGTTTATTGTGGACGTTTTTCATGCTGAGAAACAC
ACGCAGTCGAAATGCGTGCTCAGTAGTGACGACTGTAAATACCATCCCGA
TCTTCCTAAATTTAAGGATGTGCGTAAGATGAATACGGAAGTCTGTGAGC
AAACATTTCATGTACTGAATTGTTACAAAAACATCACAAGGAATATGACA
TATGCAAAGAGGTTATGTTTATTGAAATTACTGGATGACAATTATAACAC
CAGGCTTTCTAAAAAGTTAAGTTATTGAGATGGTTAAAAAAGATGTTAAA
TTAAAGCTgtataattcaaaattttcacgaGTGTTTCGTTCACTTTTAGT
TGCAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032300XLOC_032300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050959-exon-scaffold_19-1491911889:435158..435665TCONS_00050959-exon-scaffold_19-1491911889:435158..435665Clytia hemisphaericaexon
TCONS_00050959-exon-scaffold_19-1510915933:435158..435665TCONS_00050959-exon-scaffold_19-1510915933:435158..435665Clytia hemisphaericaexon
TCONS_00050959-exon-scaffold_19-1575043694:435158..435665TCONS_00050959-exon-scaffold_19-1575043694:435158..435665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:435158..435665 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.131437	0.320025	0.379332	0.457648	0.142815	0.099988	0.123851	0	0.0790233	0.0789135	0	0.067376	0.14461	0	0	0.126133	0.131989	0	0.167872	0	0.247373	2.80267	2.84241	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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