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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050955 ID=TCONS_00050955|Name=TCONS_00050955|organism=Clytia hemisphaerica|type=transcript|length=835bp
CGAAAAGATATCGCTTTCCCAAAGTCTTGCGCTTATATCAGCATCGTTAA
GTGAAATCACATCATTTGAAGAAGACCTTAGAAGAACAACCCCCAACCTC
CCGAAGTCATTTACAGGTGCACAGGGTTCGTCTAAACGAAATCATTCACC
TCCCTCAAATTGACAAAATGGTCTATTCAGCGCTTGATCAACAACTTACA
AGATTTTCAATACACCAAAGCCAACCCCCTGAGTATGATGACCCTTTCGA
TTGAGCATTTCCACTCTACAACTCATGTAAAACAAGTGCTCATGAGCCAG
CTTCAATACTCTCGCCAGTTTATGACGGCAATTAAAGAATCATTGAAGAG
AAGATGTCCATGGTCAGCATTCTATTTCACCACCAGGAAAGCAATCTGGT
ATCGACCACCAGAAAGCACCTCATGTGACTTTAACAAAATTAAAAGTCAC
CTCCCAAGAAAGAATACACCAAAACAGATcaccaaggaaaatgaagatct
tTTGCGCGATTGGGCTGCCAACTACACACGTGCGGTTCGGCAACGAACTG
TTCGACAAGAGACCACTATGGCAAAAACAGGGACCCTGCCCCATTATTGC
TATACCAAAAGTTTGATTGAAGTGGCAAGTCAATCTTCATCATTCGAAGA
ACTATCTGAACCATCTGAAAATCAACCGTCGCCATCGGATATTCAAACTT
CATTCAATCAATCCTTGTCATCGGAAAATCAACCATCTGAGGAACCTGAC
ACTTTTGACCCCTCTAGTGACGAGGAAGTTGACGATGAGCCATTTAGGGT
AGATGGGGGAGCTGGACTTGAAGAAAGCTCATTGT Run BLAST on NCBI protein sequence of TCONS_00050955-protein >TCONS_00050955-protein ID=TCONS_00050955-protein|Name=TCONS_00050955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MMTLSIEHFHSTTHVKQVLMSQLQYSRQFMTAIKESLKRRCPWSAFYFTT
RKAIWYRPPESTSCDFNKIKSHLPRKNTPKQITKENEDLLRDWAANYTRA
VRQRTVRQETTMAKTGTLPHYCYTKSLIEVASQSSSFEELSEPSENQPSP
SDIQTSFNQSLSSENQPSEEPDTFDPSSDEEVDDEPFRVDGGAGLEESSL Run BLAST on NCBI transcript from alignment at scaffold_19:383510..384344 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050955 ID=TCONS_00050955|Name=TCONS_00050955|organism=Clytia hemisphaerica|type=transcript|length=835bp|location=Sequence derived from alignment at scaffold_19:383510..384344 (Clytia hemisphaerica)
ACAATGAGCTTTCTTCAAGTCCAGCTCCCCCATCTACCCTAAATGGCTCA
TCGTCAACTTCCTCGTCACTAGAGGGGTCAAAAGTGTCAGGTTCCTCAGA
TGGTTGATTTTCCGATGACAAGGATTGATTGAATGAAGTTTGAATATCCG
ATGGCGACGGTTGATTTTCAGATGGTTCAGATAGTTCTTCGAATGATGAA
GATTGACTTGCCACTTCAATCAAACTTTTGGTATAGCAATAATGGGGCAG
GGTCCCTGTTTTTGCCATAGTGGTCTCTTGTCGAACAGTTCGTTGCCGAA
CCGCACGTGTGTAGTTGGCAGCCCAATCGCGCAAaagatcttcattttcc
ttggtgATCTGTTTTGGTGTATTCTTTCTTGGGAGGTGACTTTTAATTTT
GTTAAAGTCACATGAGGTGCTTTCTGGTGGTCGATACCAGATTGCTTTCC
TGGTGGTGAAATAGAATGCTGACCATGGACATCTTCTCTTCAATGATTCT
TTAATTGCCGTCATAAACTGGCGAGAGTATTGAAGCTGGCTCATGAGCAC
TTGTTTTACATGAGTTGTAGAGTGGAAATGCTCAATCGAAAGGGTCATCA
TACTCAGGGGGTTGGCTTTGGTGTATTGAAAATCTTGTAAGTTGTTGATC
AAGCGCTGAATAGACCATTTTGTCAATTTGAGGGAGGTGAATGATTTCGT
TTAGACGAACCCTGTGCACCTGTAAATGACTTCGGGAGGTTGGGGGTTGT
TCTTCTAAGGTCTTCTTCAAATGATGTGATTTCACTTAACGATGCTGATA
TAAGCGCAAGACTTTGGGAAAGCGATATCTTTTCG Coding sequence (CDS) from alignment at scaffold_19:383510..384344 >TCONS_00050955 ID=TCONS_00050955|Name=TCONS_00050955|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_19:383510..384344 (Clytia hemisphaerica)
CAATGAGCTTTCTTCAAGTCCAGCTCCCCCATCTACCCTAAATGGCTCAT
CGTCAACTTCCTCGTCACTAGAGGGGTCAAAAGTGTCAGGTTCCTCAGAT
GGTTGATTTTCCGATGACAAGGATTGATTGAATGAAGTTTGAATATCCGA
TGGCGACGGTTGATTTTCAGATGGTTCAGATAGTTCTTCGAATGATGAAG
ATTGACTTGCCACTTCAATCAAACTTTTGGTATAGCAATAATGGGGCAGG
GTCCCTGTTTTTGCCATAGTGGTCTCTTGTCGAACAGTTCGTTGCCGAAC
CGCACGTGTGTAGTTGGCAGCCCAATCGCGCAAaagatcttcattttcct
tggtgATCTGTTTTGGTGTATTCTTTCTTGGGAGGTGACTTTTAATTTTG
TTAAAGTCACATGAGGTGCTTTCTGGTGGTCGATACCAGATTGCTTTCCT
GGTGGTGAAATAGAATGCTGACCATGGACATCTTCTCTTCAATGATTCTT
TAATTGCCGTCATAAACTGGCGAGAGTATTGAAGCTGGCTCATGAGCACT
TGTTTTACATGAGTTGTAGAGTGGAAATGCTCAATCGAAAGGGTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050955-exon-scaffold_19-1491911889:383510..384344 | TCONS_00050955-exon-scaffold_19-1491911889:383510..384344 | Clytia hemisphaerica | exon |
| TCONS_00050955-exon-scaffold_19-1510915933:383510..384344 | TCONS_00050955-exon-scaffold_19-1510915933:383510..384344 | Clytia hemisphaerica | exon |
| TCONS_00050955-exon-scaffold_19-1575043694:383510..384344 | TCONS_00050955-exon-scaffold_19-1575043694:383510..384344 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:383510..384344 . |
Blast
The following BLAST results are available for this feature:
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