TCONS_00050955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050955
Unique NameTCONS_00050955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050955 ID=TCONS_00050955|Name=TCONS_00050955|organism=Clytia hemisphaerica|type=transcript|length=835bp
CGAAAAGATATCGCTTTCCCAAAGTCTTGCGCTTATATCAGCATCGTTAA
GTGAAATCACATCATTTGAAGAAGACCTTAGAAGAACAACCCCCAACCTC
CCGAAGTCATTTACAGGTGCACAGGGTTCGTCTAAACGAAATCATTCACC
TCCCTCAAATTGACAAAATGGTCTATTCAGCGCTTGATCAACAACTTACA
AGATTTTCAATACACCAAAGCCAACCCCCTGAGTATGATGACCCTTTCGA
TTGAGCATTTCCACTCTACAACTCATGTAAAACAAGTGCTCATGAGCCAG
CTTCAATACTCTCGCCAGTTTATGACGGCAATTAAAGAATCATTGAAGAG
AAGATGTCCATGGTCAGCATTCTATTTCACCACCAGGAAAGCAATCTGGT
ATCGACCACCAGAAAGCACCTCATGTGACTTTAACAAAATTAAAAGTCAC
CTCCCAAGAAAGAATACACCAAAACAGATcaccaaggaaaatgaagatct
tTTGCGCGATTGGGCTGCCAACTACACACGTGCGGTTCGGCAACGAACTG
TTCGACAAGAGACCACTATGGCAAAAACAGGGACCCTGCCCCATTATTGC
TATACCAAAAGTTTGATTGAAGTGGCAAGTCAATCTTCATCATTCGAAGA
ACTATCTGAACCATCTGAAAATCAACCGTCGCCATCGGATATTCAAACTT
CATTCAATCAATCCTTGTCATCGGAAAATCAACCATCTGAGGAACCTGAC
ACTTTTGACCCCTCTAGTGACGAGGAAGTTGACGATGAGCCATTTAGGGT
AGATGGGGGAGCTGGACTTGAAGAAAGCTCATTGT
Run BLAST on NCBI

protein sequence of TCONS_00050955-protein

>TCONS_00050955-protein ID=TCONS_00050955-protein|Name=TCONS_00050955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MMTLSIEHFHSTTHVKQVLMSQLQYSRQFMTAIKESLKRRCPWSAFYFTT
RKAIWYRPPESTSCDFNKIKSHLPRKNTPKQITKENEDLLRDWAANYTRA
VRQRTVRQETTMAKTGTLPHYCYTKSLIEVASQSSSFEELSEPSENQPSP
SDIQTSFNQSLSSENQPSEEPDTFDPSSDEEVDDEPFRVDGGAGLEESSL
Run BLAST on NCBI

transcript from alignment at scaffold_19:383510..384344

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050955 ID=TCONS_00050955|Name=TCONS_00050955|organism=Clytia hemisphaerica|type=transcript|length=835bp|location=Sequence derived from alignment at scaffold_19:383510..384344 (Clytia hemisphaerica)
ACAATGAGCTTTCTTCAAGTCCAGCTCCCCCATCTACCCTAAATGGCTCA TCGTCAACTTCCTCGTCACTAGAGGGGTCAAAAGTGTCAGGTTCCTCAGA TGGTTGATTTTCCGATGACAAGGATTGATTGAATGAAGTTTGAATATCCG ATGGCGACGGTTGATTTTCAGATGGTTCAGATAGTTCTTCGAATGATGAA GATTGACTTGCCACTTCAATCAAACTTTTGGTATAGCAATAATGGGGCAG GGTCCCTGTTTTTGCCATAGTGGTCTCTTGTCGAACAGTTCGTTGCCGAA CCGCACGTGTGTAGTTGGCAGCCCAATCGCGCAAaagatcttcattttcc ttggtgATCTGTTTTGGTGTATTCTTTCTTGGGAGGTGACTTTTAATTTT GTTAAAGTCACATGAGGTGCTTTCTGGTGGTCGATACCAGATTGCTTTCC TGGTGGTGAAATAGAATGCTGACCATGGACATCTTCTCTTCAATGATTCT TTAATTGCCGTCATAAACTGGCGAGAGTATTGAAGCTGGCTCATGAGCAC TTGTTTTACATGAGTTGTAGAGTGGAAATGCTCAATCGAAAGGGTCATCA TACTCAGGGGGTTGGCTTTGGTGTATTGAAAATCTTGTAAGTTGTTGATC AAGCGCTGAATAGACCATTTTGTCAATTTGAGGGAGGTGAATGATTTCGT TTAGACGAACCCTGTGCACCTGTAAATGACTTCGGGAGGTTGGGGGTTGT TCTTCTAAGGTCTTCTTCAAATGATGTGATTTCACTTAACGATGCTGATA TAAGCGCAAGACTTTGGGAAAGCGATATCTTTTCG

Coding sequence (CDS) from alignment at scaffold_19:383510..384344

>TCONS_00050955 ID=TCONS_00050955|Name=TCONS_00050955|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_19:383510..384344 (Clytia hemisphaerica)
CAATGAGCTTTCTTCAAGTCCAGCTCCCCCATCTACCCTAAATGGCTCAT
CGTCAACTTCCTCGTCACTAGAGGGGTCAAAAGTGTCAGGTTCCTCAGAT
GGTTGATTTTCCGATGACAAGGATTGATTGAATGAAGTTTGAATATCCGA
TGGCGACGGTTGATTTTCAGATGGTTCAGATAGTTCTTCGAATGATGAAG
ATTGACTTGCCACTTCAATCAAACTTTTGGTATAGCAATAATGGGGCAGG
GTCCCTGTTTTTGCCATAGTGGTCTCTTGTCGAACAGTTCGTTGCCGAAC
CGCACGTGTGTAGTTGGCAGCCCAATCGCGCAAaagatcttcattttcct
tggtgATCTGTTTTGGTGTATTCTTTCTTGGGAGGTGACTTTTAATTTTG
TTAAAGTCACATGAGGTGCTTTCTGGTGGTCGATACCAGATTGCTTTCCT
GGTGGTGAAATAGAATGCTGACCATGGACATCTTCTCTTCAATGATTCTT
TAATTGCCGTCATAAACTGGCGAGAGTATTGAAGCTGGCTCATGAGCACT
TGTTTTACATGAGTTGTAGAGTGGAAATGCTCAATCGAAAGGGTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032296XLOC_032296Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050955-proteinTCONS_00050955-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050955-exon-scaffold_19-1491911889:383510..384344TCONS_00050955-exon-scaffold_19-1491911889:383510..384344Clytia hemisphaericaexon
TCONS_00050955-exon-scaffold_19-1510915933:383510..384344TCONS_00050955-exon-scaffold_19-1510915933:383510..384344Clytia hemisphaericaexon
TCONS_00050955-exon-scaffold_19-1575043694:383510..384344TCONS_00050955-exon-scaffold_19-1575043694:383510..384344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:383510..384344 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0.0682135 0 0 0 0 0.0753838 0 0 0.103606 0 0 0 0 0 0 0 0 0.0608481 0.108611 0 0.16587 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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