TCONS_00050954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050954
Unique NameTCONS_00050954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050954 ID=TCONS_00050954|Name=TCONS_00050954|organism=Clytia hemisphaerica|type=transcript|length=487bp
ATCAAGTGTTACGAACACGGCCTTCTTGTCACCCTTCATTGTTTCTGCCA
CAACATTCAAACAGCAAGGGGTTCAATCGCACCTCAATGCAAACACGACC
GAAGGAGAGATTCGACTTCAACTCGTACTCAAAAACTGGTCGTAAAATAT
CAAAGCCAAAGGAGACCACACCTCCACTTCAAGCAACTTCAAATCAACCC
AAGGAATTACTTCCACCTCAATCAACAGATTCACTTCCATCGATGTCGGA
TCCGCCCCTATTTGAAGGCGACCTACCACTTCCAACTGATCACGATCCAC
CTCTCACTGAGATCATTCCACGTCGGACCAGAGTGGACCCACCTCAACCA
ACTCCAATGGATGTAAAACCACGTGACACTCCACCAACTGATACAACAAA
TACAGGTACAAATGAACTTTTTCTTCTAATGGCGCAACTTCATGAGGATA
TCACAGATACCATTGATGACAATCCGGTCGATATGAT
Run BLAST on NCBI

protein sequence of TCONS_00050954-protein

>TCONS_00050954-protein ID=TCONS_00050954-protein|Name=TCONS_00050954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
QVLRTRPSCHPSLFLPQHSNSKGFNRTSMQTRPKERFDFNSYSKTGRKIS
KPKETTPPLQATSNQPKELLPPQSTDSLPSMSDPPLFEGDLPLPTDHDPP
LTEIIPRRTRVDPPQPTPMDVKPRDTPPTDTTNTGTNELFLLMAQLHEDI
TDTIDDNPVDM
Run BLAST on NCBI

transcript from alignment at scaffold_19:378395..378881

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050954 ID=TCONS_00050954|Name=TCONS_00050954|organism=Clytia hemisphaerica|type=transcript|length=487bp|location=Sequence derived from alignment at scaffold_19:378395..378881 (Clytia hemisphaerica)
ATCATATCGACCGGATTGTCATCAATGGTATCTGTGATATCCTCATGAAG
TTGCGCCATTAGAAGAAAAAGTTCATTTGTACCTGTATTTGTTGTATCAG
TTGGTGGAGTGTCACGTGGTTTTACATCCATTGGAGTTGGTTGAGGTGGG
TCCACTCTGGTCCGACGTGGAATGATCTCAGTGAGAGGTGGATCGTGATC
AGTTGGAAGTGGTAGGTCGCCTTCAAATAGGGGCGGATCCGACATCGATG
GAAGTGAATCTGTTGATTGAGGTGGAAGTAATTCCTTGGGTTGATTTGAA
GTTGCTTGAAGTGGAGGTGTGGTCTCCTTTGGCTTTGATATTTTACGACC
AGTTTTTGAGTACGAGTTGAAGTCGAATCTCTCCTTCGGTCGTGTTTGCA
TTGAGGTGCGATTGAACCCCTTGCTGTTTGAATGTTGTGGCAGAAACAAT
GAAGGGTGACAAGAAGGCCGTGTTCGTAACACTTGAT

Coding sequence (CDS) from alignment at scaffold_19:378395..378881

>TCONS_00050954 ID=TCONS_00050954|Name=TCONS_00050954|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_19:378395..378881 (Clytia hemisphaerica)
CATATCGACCGGATTGTCATCAATGGTATCTGTGATATCCTCATGAAGTT
GCGCCATTAGAAGAAAAAGTTCATTTGTACCTGTATTTGTTGTATCAGTT
GGTGGAGTGTCACGTGGTTTTACATCCATTGGAGTTGGTTGAGGTGGGTC
CACTCTGGTCCGACGTGGAATGATCTCAGTGAGAGGTGGATCGTGATCAG
TTGGAAGTGGTAGGTCGCCTTCAAATAGGGGCGGATCCGACATCGATGGA
AGTGAATCTGTTGATTGAGGTGGAAGTAATTCCTTGGGTTGATTTGAAGT
TGCTTGAAGTGGAGGTGTGGTCTCCTTTGGCTTTGATATTTTACGACCAG
TTTTTGAGTACGAGTTGAAGTCGAATCTCTCCTTCGGTCGTGTTTGCATT
GAGGTGCGATTGAACCCCTTGCTGTTTGAATGTTGTGGCAGAAACAATGA
AGGGTGACAAGAAGGCCGTGTTCGTAACACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032295XLOC_032295Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050954-proteinTCONS_00050954-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050954-exon-scaffold_19-1491911889:378395..378881TCONS_00050954-exon-scaffold_19-1491911889:378395..378881Clytia hemisphaericaexon
TCONS_00050954-exon-scaffold_19-1510915933:378395..378881TCONS_00050954-exon-scaffold_19-1510915933:378395..378881Clytia hemisphaericaexon
TCONS_00050954-exon-scaffold_19-1575043694:378395..378881TCONS_00050954-exon-scaffold_19-1575043694:378395..378881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:378395..378881 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.493677	0.306499	1.09671	0.424099	1.53263	1.79057	1.64046	1.71594	0.752787	1.55485	0	0.67225	0.848746	0.223026	0.144931	0.0777667	0.191604	0.196388	0.542642	0.141959	0.331248	0.293827	0.401887	0.26606	0.274035	2.16988	0.349979	0.373507	0.0556758	0.288629
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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