TCONS_00050953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050953
Unique NameTCONS_00050953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050953 ID=TCONS_00050953|Name=TCONS_00050953|organism=Clytia hemisphaerica|type=transcript|length=620bp
gccAGTCATAGTGAGGATTATTTAATTGGTCCATCAAAATTTGGTGTAAA
TGTCGATTGAAGGTAGTATATGAAGGATGGTATGAAATCATATAGATTTT
ATTCTGATTTGGTAACCACTTCTGAAAGAATCGATAGGGAAAGAATCCGA
TAGACAATACCACGAGATCGACTTGTTTACGGACAAAAAGTTTTCTAGTT
AGCTCAAATACTTTATCATGTTTATCATCAAAATAACTCTGAAGTGCAAA
TATCACAAAAAATAATGTTTGTTTAATATCGTTGTTGTTATGAGGTATAT
TAAGTAAAACCTTTATCACTTCATTTTCGTCAGACCATGTTATTGCCTGA
AATTCGGATTCCAAAAATTCAGCGTAATTTTCCATAGTTAAGCGAATTGA
ACGGCTTTGTATCGGGGAAAATATCCAAACAATAGAACAAGGTTTATCCA
ATAATGACTTTACTAAATAGCTCAATTGTATGACAGAATcgtgaaagttt
ttttcgagAGTCGGGTATCGTGTAGGTTCGATATCAATCATAACGTACGG
AATAATGGTGACATTCCGGACTTCCGTACACGGTAAAATCAAGTCTCCCA
AAGCCATCGGTACTGATACA
Run BLAST on NCBI

transcript from alignment at scaffold_19:364931..365550

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050953 ID=TCONS_00050953|Name=TCONS_00050953|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at scaffold_19:364931..365550 (Clytia hemisphaerica)
TGTATCAGTACCGATGGCTTTGGGAGACTTGATTTTACCGTGTACGGAAG
TCCGGAATGTCACCATTATTCCGTACGTTATGATTGATATCGAACCTACA
CGATACCCGACTctcgaaaaaaactttcacgATTCTGTCATACAATTGAG
CTATTTAGTAAAGTCATTATTGGATAAACCTTGTTCTATTGTTTGGATAT
TTTCCCCGATACAAAGCCGTTCAATTCGCTTAACTATGGAAAATTACGCT
GAATTTTTGGAATCCGAATTTCAGGCAATAACATGGTCTGACGAAAATGA
AGTGATAAAGGTTTTACTTAATATACCTCATAACAACAACGATATTAAAC
AAACATTATTTTTTGTGATATTTGCACTTCAGAGTTATTTTGATGATAAA
CATGATAAAGTATTTGAGCTAACTAGAAAACTTTTTGTCCGTAAACAAGT
CGATCTCGTGGTATTGTCTATCGGATTCTTTCCCTATCGATTCTTTCAGA
AGTGGTTACCAAATCAGAATAAAATCTATATGATTTCATACCATCCTTCA
TATACTACCTTCAATCGACATTTACACCAAATTTTGATGGACCAATTAAA
TAATCCTCACTATGACTggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032294XLOC_032294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050953-exon-scaffold_19-1491911889:364931..365550TCONS_00050953-exon-scaffold_19-1491911889:364931..365550Clytia hemisphaericaexon
TCONS_00050953-exon-scaffold_19-1510915933:364931..365550TCONS_00050953-exon-scaffold_19-1510915933:364931..365550Clytia hemisphaericaexon
TCONS_00050953-exon-scaffold_19-1575043694:364931..365550TCONS_00050953-exon-scaffold_19-1575043694:364931..365550Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:364931..365550 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.119883	0	0	0	0.226915	0	0.525304	0	0	0	0	1.70071	1.02343	0.275484	0.319922	0.341995	0.191823	1.89576	2.42445	0	0	0.0989734	0	0	0	0.132595	0	0	0.130251
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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