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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050952 ID=TCONS_00050952|Name=TCONS_00050952|organism=Clytia hemisphaerica|type=transcript|length=838bp
GGGGCTGCTTTGTCATTAGTCAAAGGTTTAGACAACATCGACGAAATTTG
GCTTCGATTGAAATCGTCATTTGGAGATACAAGAATGCTTCTCTCATGTA
AACTCGGCCAGCTGGATAACATCGATACATCCGGCAAATCCAAAGAGGAT
AAGTTGATCACCAAATACAGTCGAATCATCTGTGTCATGAAAGATCTCAT
CAAACTTGCAACAAAGCATGGCATTGAAAGAAACTACGGAGAAGCAACCG
AAAAGATATACAAAATCATGGGAGACCCTCTTGTCAACAAGTGGCTTGAC
TTGATGTGTGATGATGTTTCAATCGAAGTGCCGCTCTGGACCAAGCTAAT
CGCATTCCTCGAAAGACGGATGAAAATTCAGCAACAAAAGATGCTTGTCA
CCCCACACAAGGAAGACAAGAACAAGGAGGAGAACAAGATGGGGTCAAAA
GGCTTCTTCATGGATTCAGACCATTCGACATGCTTCATTTGTGGAAACTT
GTCAAATCACATTACAACAAATGGTCCAGGAAAATCCAAGaatattcaat
attttgctTGTAAATTATTTACAGAAAAAACACCGTCTGAACGTCTTCAT
cttctgaaagaaaaaggatATTGTATCCAATGTCTCTACCCGGGTGCAGA
TTCGTCTAAAGGAAACACAAAAAGGGGAAATGCCAGAAAGAATTTGTATG
TCGTCTTGTTCAAGTACCGATACATATCCCAGAATACCAATCTGCCGGAA
TTCTCCCAGAACATCAAGCTCGCGTTTATAGCAAATACAAACTTCCATGC
AAAGCCAAGCAATCGCCGCCGCCGCAGCTACCGCAGTG Run BLAST on NCBI protein sequence of TCONS_00050952-protein >TCONS_00050952-protein ID=TCONS_00050952-protein|Name=TCONS_00050952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
GAALSLVKGLDNIDEIWLRLKSSFGDTRMLLSCKLGQLDNIDTSGKSKED
KLITKYSRIICVMKDLIKLATKHGIERNYGEATEKIYKIMGDPLVNKWLD
LMCDDVSIEVPLWTKLIAFLERRMKIQQQKMLVTPHKEDKNKEENKMGSK
GFFMDSDHSTCFICGNLSNHITTNGPGKSKNIQYFACKLFTEKTPSERLH
LLKEKGYCIQCLYPGADSSKGNTKRGNARKNLYVVLFKYRYISQNTNLPE
FSQNIKLAFIANTNFHAKPSNRRRRSYRS Run BLAST on NCBI transcript from alignment at scaffold_19:360482..361319 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050952 ID=TCONS_00050952|Name=TCONS_00050952|organism=Clytia hemisphaerica|type=transcript|length=838bp|location=Sequence derived from alignment at scaffold_19:360482..361319 (Clytia hemisphaerica)
CACTGCGGTAGCTGCGGCGGCGGCGATTGCTTGGCTTTGCATGGAAGTTT
GTATTTGCTATAAACGCGAGCTTGATGTTCTGGGAGAATTCCGGCAGATT
GGTATTCTGGGATATGTATCGGTACTTGAACAAGACGACATACAAATTCT
TTCTGGCATTTCCCCTTTTTGTGTTTCCTTTAGACGAATCTGCACCCGGG
TAGAGACATTGGATACAATatcctttttctttcagaagATGAAGACGTTC
AGACGGTGTTTTTTCTGTAAATAATTTACAagcaaaatattgaatattCT
TGGATTTTCCTGGACCATTTGTTGTAATGTGATTTGACAAGTTTCCACAA
ATGAAGCATGTCGAATGGTCTGAATCCATGAAGAAGCCTTTTGACCCCAT
CTTGTTCTCCTCCTTGTTCTTGTCTTCCTTGTGTGGGGTGACAAGCATCT
TTTGTTGCTGAATTTTCATCCGTCTTTCGAGGAATGCGATTAGCTTGGTC
CAGAGCGGCACTTCGATTGAAACATCATCACACATCAAGTCAAGCCACTT
GTTGACAAGAGGGTCTCCCATGATTTTGTATATCTTTTCGGTTGCTTCTC
CGTAGTTTCTTTCAATGCCATGCTTTGTTGCAAGTTTGATGAGATCTTTC
ATGACACAGATGATTCGACTGTATTTGGTGATCAACTTATCCTCTTTGGA
TTTGCCGGATGTATCGATGTTATCCAGCTGGCCGAGTTTACATGAGAGAA
GCATTCTTGTATCTCCAAATGACGATTTCAATCGAAGCCAAATTTCGTCG
ATGTTGTCTAAACCTTTGACTAATGACAAAGCAGCCCC Coding sequence (CDS) from alignment at scaffold_19:360482..361319 >TCONS_00050952 ID=TCONS_00050952|Name=TCONS_00050952|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_19:360482..361319 (Clytia hemisphaerica)
ACTGCGGTAGCTGCGGCGGCGGCGATTGCTTGGCTTTGCATGGAAGTTTG
TATTTGCTATAAACGCGAGCTTGATGTTCTGGGAGAATTCCGGCAGATTG
GTATTCTGGGATATGTATCGGTACTTGAACAAGACGACATACAAATTCTT
TCTGGCATTTCCCCTTTTTGTGTTTCCTTTAGACGAATCTGCACCCGGGT
AGAGACATTGGATACAATatcctttttctttcagaagATGAAGACGTTCA
GACGGTGTTTTTTCTGTAAATAATTTACAagcaaaatattgaatattCTT
GGATTTTCCTGGACCATTTGTTGTAATGTGATTTGACAAGTTTCCACAAA
TGAAGCATGTCGAATGGTCTGAATCCATGAAGAAGCCTTTTGACCCCATC
TTGTTCTCCTCCTTGTTCTTGTCTTCCTTGTGTGGGGTGACAAGCATCTT
TTGTTGCTGAATTTTCATCCGTCTTTCGAGGAATGCGATTAGCTTGGTCC
AGAGCGGCACTTCGATTGAAACATCATCACACATCAAGTCAAGCCACTTG
TTGACAAGAGGGTCTCCCATGATTTTGTATATCTTTTCGGTTGCTTCTCC
GTAGTTTCTTTCAATGCCATGCTTTGTTGCAAGTTTGATGAGATCTTTCA
TGACACAGATGATTCGACTGTATTTGGTGATCAACTTATCCTCTTTGGAT
TTGCCGGATGTATCGATGTTATCCAGCTGGCCGAGTTTACATGAGAGAAG
CATTCTTGTATCTCCAAATGACGATTTCAATCGAAGCCAAATTTCGTCGA
TGTTGTCTAAACCTTTGACTAATGACAAAGCAGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050952-exon-scaffold_19-1491911889:360482..361319 | TCONS_00050952-exon-scaffold_19-1491911889:360482..361319 | Clytia hemisphaerica | exon |
| TCONS_00050952-exon-scaffold_19-1510915933:360482..361319 | TCONS_00050952-exon-scaffold_19-1510915933:360482..361319 | Clytia hemisphaerica | exon |
| TCONS_00050952-exon-scaffold_19-1575043694:360482..361319 | TCONS_00050952-exon-scaffold_19-1575043694:360482..361319 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:360482..361319 . |
Blast
The following BLAST results are available for this feature:
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