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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050903 ID=TCONS_00050903|Name=TCONS_00050903|organism=Clytia hemisphaerica|type=transcript|length=3702bpRun BLAST on NCBI protein sequence of TCONS_00050903-protein >TCONS_00050903-protein ID=TCONS_00050903-protein|Name=TCONS_00050903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1136bp MERMSLLEKLKTLNQWQLQQQLHFAKLQSDVEAVSIPQNLSNKENLVIGRRun BLAST on NCBI transcript from alignment at scaffold_19:125236..137096- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050903 ID=TCONS_00050903|Name=TCONS_00050903|organism=Clytia hemisphaerica|type=transcript|length=11861bp|location=Sequence derived from alignment at scaffold_19:125236..137096- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_19:125236..137096- >TCONS_00050903 ID=TCONS_00050903|Name=TCONS_00050903|organism=Clytia hemisphaerica|type=CDS|length=61344bp|location=Sequence derived from alignment at scaffold_19:125236..137096- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00050903 vs. Swiss-Prot (Human)
Match: CENPJ (Centromere protein J OS=Homo sapiens GN=CENPJ PE=1 SV=2) HSP 1 Score: 257.299 bits (656), Expect = 9.034e-70 Identity = 112/186 (60.22%), Postives = 148/186 (79.57%), Query Frame = 3
Query: 3132 GAMQHLKDGKTEVLHADGSKLITFPNGTKKTISADGKTISICFFNGDIKRLHPDQRVVYYYAETQTTHTTFKDGLEVLEFSNKQIEKRHTDGRTEIIFPDQTVKYVNPDGSEETVFVDGMVQNVDKTGVRTVLYPNGQREVHTNQFKRREYPNGTIKTVYEDGRQETKYSNGRLRVKDKDGNLVID 3689
G + H DGK E ++ +G ++I FPNGT+K +SADGKTI++ FFNGD+K++ PDQRV+YYYA QTTHTT+ +GLEVL FS+ QIEK + DGR EI FPDQTVK + PDG EE++F DG + V + G + + + NGQRE+HT QFKRREYP+GT+KTVY +G QETKY +GR+RVKDK+GN+++D
Sbjct: 1151 GEISH-PDGKVEKVYKNGCRVILFPNGTRKEVSADGKTITVTFFNGDVKQVMPDQRVIYYYAAAQTTHTTYPEGLEVLHFSSGQIEKHYPDGRKEITFPDQTVKNLFPDGQEESIFPDGTIVRVQRDGNKLIEFNNGQRELHTAQFKRREYPDGTVKTVYANGHQETKYRSGRIRVKDKEGNVLMD 1335 HSP 2 Score: 112.464 bits (280), Expect = 8.179e-25 Identity = 90/275 (32.73%), Postives = 141/275 (51.27%), Query Frame = 3
Query: 2142 DFDDESTWSDNSLNDGEDTSIFSAGECNNDTLRDTSDNENSPSHVF-------------QETVPPKRIISKRKDRSVSQNTTTELEEGTVEPPSL---------------LTQTVDIPTS--SISNTVKQKLAELEKEIKTFRMENDKLAKLREQRETEVSKLHKEIESFQRERKAETERFESYQTEETKKLRXXXXXXXXXXXXXXXXPNKQEREETKELKQELERLKDELKTREARWNNASIRFRTRITDLEEENGELKKEIKIFEEQRIERW 2876
DFDDE TW+D CN+D + +P + ++ P KR K R T+EL PSL L + D P + S +++K+ ELE EI+ F+ EN LAKLR +RE+ + KL KEI F++++ E R E ++ EE +KL+ E++ FEK+ AA+ FP+K+EREE + LKQ++ L+++LK +E +W++ R R++I L EN +L++EIK+ E R++ W
Sbjct: 792 DFDDERTWTD-----------LEENLCNHDVVLGNESTYGTPQTCYPNNEIGILDKTIKRKIAPVKRGEDLSKSRRSRSPPTSELMMKFF--PSLKPKPKSDSHLGNELKLNISQDQPPGDNARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQKERKVFEKYTTAARTFPDKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEIKVMERFRLDAW 1053 The following BLAST results are available for this feature:
BLAST of TCONS_00050903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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