TCONS_00050901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050901
Unique NameTCONS_00050901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050901 ID=TCONS_00050901|Name=TCONS_00050901|organism=Clytia hemisphaerica|type=transcript|length=1731bp
GAGGTTAGCCTCTCAGAGGGTGTATACTTACTTAGATTAAAATCCTGCCG
TGCCGTTGTGACTCAATGACTATGAAATCACCTAGCAATGACTAAAGCAT
ACTACTGTCAACTCTGTCTTCTTCATTAAACTCTGGAAACAATAATCAAA
TCTAAACATTATTTAGActgaatgaagaaaaattaattataaaaTTAGGG
GAAATATAATATGGCAGCAGATCAAGCATCGCTTCTTCTAAAGAGACAGT
TACAAGaaTTAACAAAGAAACCGGTTGAAGGGTTTTCAGCTGGATTGGTT
GATGatgaaaatcttttcaaatggGAGGTAATGGTCATGGGACCAACTGA
TTCCTTTTACGAGGGAGGATTTTTCAAAGCACACTTAATGTTTCCACAAG
ATTACCCGCAGAAGCCGCCGAAGATGAAATTCATCAGTGAATTTTGGCAT
CCCAACGTATCAAAAGATGGTGAGGTCTGTATATCTATACTTCACGAGCC
AGGAGAAGATAAATTTGGATATGAGCGAGCAGAGGAAAGATGGTTGCCAA
TACATACAGTAGAAACAATTTTATTATCTGTCATCTCAATGATCAATGAA
CCAAATGATGAATCACCTGCCAATGTAGATGCTGCTAAAGAATGGAGAGA
CGAATACGATACCACGTTTAAGAAGAATGTCCGAAAATGTGTCCGGAAAA
GTCAAGAATTTTTATGATACtagttgtttttctttttcgaaatcaTTATA
AATAAACCAACAAAAAATCTATGTAAAAATCTTTTCTCTCAACTGTATAT
TATATAAACTtccaaaaatatctttcaatttaacacaaaaatatttagct
TTTTTTATTGATGCTATTTCTGAGTTGACAGTTTTTAtgtgattttgtaa
ttttaaattGAGTTTTGTCGTTAGACTCTCTTTAATATTATGTCAggttt
ttgatatttcaatattttgctatTCCTAATCAAATCTTGTCACTCTGTCA
GAGTTTGGTTATATTTTTGGCAAGATAAAATCTCATTGCTTTCACTTGCT
TCTGATGACAAGCTTTGGCAAAACAGGGGAGCAAAATAGTATGTCAATTT
CAGATTagtatttgaagaaaaaaatcaagaatttaagAGCTGTTAtttat
tttgctcaaaatgCTTATTATATAATATTAGAAAAAAGTGCAAGTGCTgc
gatttttttatattttttgttaaacGATGAATATTCTATAGGAGTTttat
ttttcgcttttttgtGGCACTTATGGTAGAAACAATCTCATTAGGGAGGG
AGTGTGTCGGCGCTAAATATTtggtatttgaaaaaaagaatagaaaatCG
ATCGGATTCcagatttgattgattttttttgctaattttataCCATCGAA
AGACTATTATTTATGTCATAGAATTAGTTATGCGGAAAAATCTTTGGTTG
AATTTGTCcattaatttttagaaattttaggcGTATTTGTAAAGGGAGTG
TTTTTTTCAGTAGTTTTCTTTATAGACAGGATGTTATCGCAATGTTAAAC
AGAAGGTTCCTATACAGGCGTTTTATTATGAGAAAACCAACTTAAAAATA
CATTATAATTTGCAATAAAAATACTTAAACCCGATATTTTACTTTGTTCC
TTTGTTTTACTCCTTTTTCACCTTCTGAGAATTTCGAACAATATTTGTCT
AGTTTTGAGgataattttcttgtttttgaaa
Run BLAST on NCBI

transcript from alignment at scaffold_19:61474..67263-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050901 ID=TCONS_00050901|Name=TCONS_00050901|organism=Clytia hemisphaerica|type=transcript|length=5790bp|location=Sequence derived from alignment at scaffold_19:61474..67263- (Clytia hemisphaerica)
GAGGTTAGCCTCTCAGAGGGTGTATACTTACTTAGATTAAAATCCTGCCG TGCCGTTGTGACTCAATGACTATGAAATCACCTAGCAATGACTAAAGCAT ACTACTGTCAACTCTGTCTTCTTCATTAAACTCTGGAAACAATAATCAAA TCTAAACATTATTTAGACTGAATGAAGAAAAATTAATTATAAAATTAGGG GAAATATAATATGGCAGCAGATCAAGCATCGCTTCTTCTAAAGAGACAGT TACAAGGTAATGTTATTGTTTGGCTTCTTCTATCAAAAGGGCTCTAGCCT CTTGGATCCTTCTTATACTAGAAATATCTTACAAGTTTATCTTGGTAAAC TGTTTTTCCTAGATTTTAGAACATATCAAACCATAAAGTAGTGATAAGTT TAGGGAGACAAATACTGCAATAAAGTTTTTCTAGAAATCAGAACACATAA TTTGTATAAAAAATGGAGAGGTCATAACATTGGGTCTCCTAGAAGATAAG AACACATATTTCTAAAATATCTCTCCGCCGACTGCTTCTGTACATGCGAA CTTGCAGGCACAATGCACTTTTCTTGAAATTAAAATTTTATTTAGACTAT AAACAAAATACCGAAAATATGAAATCATTTTAGTTTGAGTCCCTTATTAA GGGAACTTATTTTGGCGGGAACTAATTTTGCCGGGCAGCAAAAATCCTAA AAGAAACTTTTTTTGGCGGGAACTGATTTTGACAAATGACAGTGTAAATT TGTTCTATTTTGCCTTATTTTGAGCAACTTTGATGAATTGCAGGGTTCAT TTAGGCAAAAAAAAACAAAAAAAATTTTGGGAACTTATTTTTTGCGAGTG AGCGAAATATATTTAATTTTGGTGGGAACTAATTTTGGCGAATTTCGTCT AAATTGGCCAAATCCGCCAAAATAAGTTTTCAGTCAATTCTATTTGCTTT GTTTCACCATTGATTTTTTTTTTCAATTTAGAATTAACAAAGAAACCGGT TGAAGGGTTTTCAGCTGGATTGGTTGATGATGAAAATCTTTTCAAATGGG AGGTAATGGTCATGGGACCAACTGATTCCTTTTAGTAAGTGTGCATGAAG AAAAAGGACGATTCTAATGCTCTAAGACCAGTAAATCTATAAATCGACCA GCCTTAAGCTTAGCTGTTCCTAATTTTTTTTTCGTGTTTAGAACCGGCAT TTCTTATATAGCCATATCTGTAATTTGTTGATAAGTTTGTTCTCAATATG CTCTTAGGTTTTTAGCAANAAGACACATAATTTTCCCAAAGTATGGTCAA TTTAGTGGCTGACAGTAAAAATGTCACAAAACGGGTTTATTTTTTATTTG GATCCGATTTTCGACTGTGTTGAAAATTGGAAAATTGGATTTCACAATTT CACCCTATCTGGGTGCTCAAAATTAGCCGTAAAATTTGAGGTTAGCCTCT CAGAGGGTGTATACTTACTTAGATTAAAATCCTGCCGTGCCGTTGTGACT CAATGACTATGAAATCACCTAGCAATGACTAAAGCATACTACTGTCAACT CTGTCTTCTTCATTAAACTCTGGAAACAATAATCAAATCTAAACATTATT TAGACTGAATGAAGAAAAATTAATTATAAAATTAGGGGAAATATAATATG GCAGCAGATCAAGCATCGCTTCTTCTAAAGAGACAGTTACAAGGTAATGT TATTGTTTGGCTTCTTCTATCAAAAGGGCTCTAGCCTCTTGGATCCTTCT TATACTAGAAATATCTTACAAGTTTATCTTGGTAAACTGTTTTTCCTAGA TTTTAGAACATATCAAACCATAAAGTAGTGATAAGTTTAGGGAGACAAAT ACTGCAATAAAGTTTTTCTAGAAATCAGAACACATAATTTGTATAAAAAA TGGAGAGGTCATAACATTGGGTCTCCTAGAAGATAAGAACACATATTTCT AAAATATCTCTCCGCCGACTGCTTCTGTACATGCGAACTTGCAGGCACAA TGCACTTTTCTTGAAATTAAAATTTCATTTAGACTAAAAACAAAATACCG AAAATATGAAATCATTTTAGTTTGAGNCGCCGACTGCTTCTGTACATGCG AACTTGCAGGCACAATGCACTTTTCTTGAAATTAAAATTTTATTTAGACT ATAAACAAAATACCGAAAATATGAAATCATTTTAGTTTGAGTCCCTTATT AAGGGAACTTATTTTGGCGGGAACTAATTTTGCCGGGCAGCAAAAATCCT AAAAGAAACTTTTTTTGGCGGGAACTGATTTTGACAAATGACAGTGTAAA TTTGTTCTATTTTGCCTTATTTTGAGCAACTTTGATGAATTGCAGGGTTC ATTTAGGCAAAAAAAAACAAAAAAAATTTTGGGAACTTATTTTTTGCGAG TGAGCGAAATATATTTAATTTTGGTGGGAACTAATTTTGGCGAATTTCGT CTAAATTGGCCAAATCCGCCAAAATAAGTTTTCAGTCAATTCTATTTGCT TTGTTTCACCATTGATTTTTTTTTTCAATTTAGAATTAACAAAGAAACCG GTTGAAGGGTTTTCAGCTGGATTGGTTGATGATGAAAATCTTTTCAAATG GGAGGTAATGGTCATGGGACCAACTGATTCCTTTTAGTAAGTGTGCATGA AGAAAAAGGACGATTCTAATGCTCTAAGACCAGTAAATCTATAAATCGAC CAGCCTTAAGCTTAGCTGTTCCTAATTTTTTTTTCGTGTTTAGAACCGGC ATTTCTTATATAGCCATATCTGTAATTTGTTGATAAGTTTGTTCTCAATA TGCTCTTAGGTTTTTAGCAATAATGGAGCAAGTGTTCTTTATAATTATCC TATTCATAAAAAGTGTGTATTGATTAGTACTCACTATAAGTATAANATAA TGGAGCAAGTGTTTTTTATAATTATCCTATTCATAAAAAGTGTGTATTGA TTAGTACTCACTATAAGTATAATCTTTCTGAAATTCAGATGGGAAATTCT TGGAGAGTGGAAATAGAAAATCGCTTGGAATTAAATTGCTTTCTCTTTAT TTATGAATTCTGACTTACTTACTTTCAGCGAGGGAGGATTTTTCAAAGCA CACTTAATGTTTCCACAAGATTACCCGCAGAAGCCGCCGAAGATGAAATT CATCAGTGAATTTTGGCATCCCAACGGTTTGTTATAATACATGAATTTTA AAGGACCTAAATGTTTTGTTTGGCGAGTATAAACATTTTAGAGAACCTCC ACTAAAATGAAAATTTGTATTCATTTGAGAAGTTTTTTTGAAATACCAAG TAAACAAATTTGCATCTACCAGTACTCTAAACTTTTGTATGTACCTTAAA GGAAGAAATTTTGGCGGGAATTTAATTTGGCGGATGGCCAAAAAAGTTTT TTCAGAGGGAATTTAATTTGGCGGATGGACGAAAACACTGAATTTGGCGG GAATTTAATTTGGCGGTCGCTTAAAAATTTAACCTTAAGATGGCGTCAAA ACAGCGAAAANACGGGAATTTAATTTAGCGGTCGCTTAAAAATTTAACCT TAAGATGGCGTCAAAACAGCAAAAAAATAGCAAAAACACCTTATAATTTC AAAATGTTTAATTTGGCGGAAATTTAATTTGGTGGATGGCGGAAAAAAGA AATTTTGGCGGGAACTTAATTTGGCGGATTTCAGTCAAATCCGCCAAATA AATTTCCGCCAAAATTACTTCCTTTAAGGTAGTTCTTTTATACCTTGATA TAAAGTTATATATACCGACTAAAGCTCTACAACCCTATTCGATTGTTAGA AGGGATCTAGTTAGTATTGACTCCACTCTTTATTTCTTCTAGTATCAAAA GATGGTGAGGTCTGTATATCTATACTTCACGAGCCAGGAGAAGATAAATT TGGATATGAGCGAGCAGAGGAAAGATGGTTGCCAATACATACAGTAGAAA CAATTTTATTATCTGTCATCTCAATGATCAATGAACCAAATGATGAATCA CCTGCCAATGTAGATGCTGCTGTAAGAAACTAATGTAGAATTGTTTCCCC TGAATGATTGAGACATGTTTGAGTGGTCGCAAAAGAGAACCCTTCTCCTT CCTTAATCTTGTTCTGTTCATTTCTTAGGTTGTGAAGCCAACTGCTTACA CTGGAGTCTATTTCTACTGAATTTTCCTTTCTGATAATTCTAATGGCCCT GAGCCTAGGGAAGTAGACTAGAGGATTTCGCAATCTTGGATTTTCTTCAC TTTCGTTTTGAAAAATTATATAAAAATACCCAAACATGAAATATATTCTG AAATCCCATCAAAGTTTATGAAACTAATGTAATAAAAACATGAAATTACC TTCAAAGTTTGAAAAAATGGTCTATTTGGTCATGGTTTTTTATTTGTTTT TCTCCAAAAAGGGACTAGATCTATGGATTTGCTACATTCTCAAGCAAAGC CAAAAAAATGGAGTCTGTCAAATTACACTAGGCCACTTATCAGCTGCATC AAGTCTATCAAAAAGCTATTAGTAGCCTCTGGGCTAGCTGCTCCTGAACT TCGTGATAACTACCAATACCCGGCTAAAGGTCCTTCGTAAACATTCCACC ATTAAGATTTAGCGTTGTTAATTACCCCTCTCCACACGTTTGCTTTTATA TGCAAGTTGTTTTATTTCCTGTTTTTTTGTATTTCGATATTACAGAAAGA ATGGAGAGACGAATACGATACCACGTTTAAGAAGAATGTCCGAAAATGTG TCCGGAAAAGTCAAGAATTTTTATGATACTAGTTGTTTTTCTTTTTCGAA ATCATTATAAATAAACCAACAAAAAATCTATGTAAAAATCTTTTCTCTCA ACTGTATATTATATAAACTTCCAAAAATATCTTTCAATTTAACACAAAAA TATTTAGCTTTTTTTATTGATGCTATTTCTGAGTTGACAGTTTTTATGTG ATTTTGTAATTTTAAATTGAGTTTTGTCGTTAGACTCTCTTTAATATTAT GTCAGGTTTTTGATATTTCAATATTTTGCTATTCCTAATCAAATCTTGTC ACTCTGTCAGAGTTTGGTTATATTTTTGGCAAGATAAAATCTCATTGCTT TCACTTGCTTCTGATGACAAGCTTTGGCAAAACAGGGGAGCAAAATAGTA TGTCAATTTCAGATTAGTATTTGAAGAAAAAAATCAAGAATTTAAGAGCT GTTATTTATTTTGCTCAAAATGCTTATTATATAATATTAGAAAAAAGTGC AAGTGCTGCGATTTTTTTATATTTTTTGTTAAACGATGAATATTCTATAG GAGTTTTATTTTTCGCTTTTTTGTGGCACTTATGGTAGAAACAATCTCAT TAGGGAGGGAGTGTGTCGGCGCTAAATATTTGGTATTTGAAAAAAAGAAT AGAAAATCGATCGGATTCCAGATTTGATTGATTTTTTTTGCTAATTTTAT ACCATCGAAAGACTATTATTTATGTCATAGAATTAGTTATGCGGAAAAAT CTTTGGTTGAATTTGTCCATTAATTTTTAGAAATTTTAGGCGTATTTGTA AAGGGAGTGTTTTTTTCAGTAGTTTTCTTTATAGACAGGATGTTATCGCA ATGTTAAACAGAAGGTTCCTATACAGGCGTTTTATTATGAGAAAACCAAC TTAAAAATACATTATAATTTGCAATAAAAATACTTAAACCCGATATTTTA CTTTGTTCCTTTGTTTTACTCCTTTTTCACCTTCTGAGAATTTCGAACAA TATTTGTCTAGTTTTGAGGATAATTTTCTTGTTTTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032261XLOC_032261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050901-exon-scaffold_19-1575043694:67008..67263TCONS_00050901-exon-scaffold_19-1575043694:67008..67263Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1575043694:64628..64730TCONS_00050901-exon-scaffold_19-1575043694:64628..64730Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1575043694:64088..64185TCONS_00050901-exon-scaffold_19-1575043694:64088..64185Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1575043694:63243..63421TCONS_00050901-exon-scaffold_19-1575043694:63243..63421Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1575043694:61474..62568TCONS_00050901-exon-scaffold_19-1575043694:61474..62568Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1510915933:67008..67263TCONS_00050901-exon-scaffold_19-1510915933:67008..67263Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1510915933:64628..64730TCONS_00050901-exon-scaffold_19-1510915933:64628..64730Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1510915933:64088..64185TCONS_00050901-exon-scaffold_19-1510915933:64088..64185Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1510915933:63243..63421TCONS_00050901-exon-scaffold_19-1510915933:63243..63421Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1510915933:61474..62568TCONS_00050901-exon-scaffold_19-1510915933:61474..62568Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1491911889:67008..67263TCONS_00050901-exon-scaffold_19-1491911889:67008..67263Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1491911889:64628..64730TCONS_00050901-exon-scaffold_19-1491911889:64628..64730Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1491911889:64088..64185TCONS_00050901-exon-scaffold_19-1491911889:64088..64185Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1491911889:63243..63421TCONS_00050901-exon-scaffold_19-1491911889:63243..63421Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1491911889:61474..62568TCONS_00050901-exon-scaffold_19-1491911889:61474..62568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:61474..67263 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.0297 35.0326 67.6673 84.0485 56.3173 49.9888 31.066 42.7969 14.1659 10.6757 6.1779 8.63735 9.42191 11.2506 6.12273 8.825 20.3192 16.3467 3.23942 9.39645 20.3367 16.4141 29.0644 24.985 34.5149 46.0795 21.2346 8.32294 16.8574 18.4907
Blast
BLAST of TCONS_00050901 vs. Swiss-Prot (Human)
Match: UB2G1 (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 2.654e-84
Identity = 116/166 (69.88%), Postives = 144/166 (86.75%), Query Frame = 1
Query:  211 MAADQASLLLKRQLQELTKKPVEGFSAGLVDDENLFKWEVMVMGPTDSFYEGGFFKAHLMFPQDYPQKPPKMKFISEFWHPNVSKDGEVCISILHEPGEDKFGYERAEERWLPIHTVETILLSVISMINEPNDESPANVDAAKEWRDEYDTTFKKNVRKCVRKSQE 708
            M   Q++LLL+RQL EL K PVEGFSAGL+DD +L++WEV+++GP D+ YEGG FKAHL FP+DYP +PPKMKFI+E WHPNV K+G+VCISILHEPGEDK+GYE+ EERWLPIHTVETI++SVISM+ +PN +SPANVDAAKEWR++ +  FK+ V +CVRKSQE
Sbjct:    1 MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
The following BLAST results are available for this feature:
BLAST of TCONS_00050901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UB2G12.654e-8469.88Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
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