TCONS_00050901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050901
Unique NameTCONS_00050901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050901 ID=TCONS_00050901|Name=TCONS_00050901|organism=Clytia hemisphaerica|type=transcript|length=1731bp
GAGGTTAGCCTCTCAGAGGGTGTATACTTACTTAGATTAAAATCCTGCCG
TGCCGTTGTGACTCAATGACTATGAAATCACCTAGCAATGACTAAAGCAT
ACTACTGTCAACTCTGTCTTCTTCATTAAACTCTGGAAACAATAATCAAA
TCTAAACATTATTTAGActgaatgaagaaaaattaattataaaaTTAGGG
GAAATATAATATGGCAGCAGATCAAGCATCGCTTCTTCTAAAGAGACAGT
TACAAGaaTTAACAAAGAAACCGGTTGAAGGGTTTTCAGCTGGATTGGTT
GATGatgaaaatcttttcaaatggGAGGTAATGGTCATGGGACCAACTGA
TTCCTTTTACGAGGGAGGATTTTTCAAAGCACACTTAATGTTTCCACAAG
ATTACCCGCAGAAGCCGCCGAAGATGAAATTCATCAGTGAATTTTGGCAT
CCCAACGTATCAAAAGATGGTGAGGTCTGTATATCTATACTTCACGAGCC
AGGAGAAGATAAATTTGGATATGAGCGAGCAGAGGAAAGATGGTTGCCAA
TACATACAGTAGAAACAATTTTATTATCTGTCATCTCAATGATCAATGAA
CCAAATGATGAATCACCTGCCAATGTAGATGCTGCTAAAGAATGGAGAGA
CGAATACGATACCACGTTTAAGAAGAATGTCCGAAAATGTGTCCGGAAAA
GTCAAGAATTTTTATGATACtagttgtttttctttttcgaaatcaTTATA
AATAAACCAACAAAAAATCTATGTAAAAATCTTTTCTCTCAACTGTATAT
TATATAAACTtccaaaaatatctttcaatttaacacaaaaatatttagct
TTTTTTATTGATGCTATTTCTGAGTTGACAGTTTTTAtgtgattttgtaa
ttttaaattGAGTTTTGTCGTTAGACTCTCTTTAATATTATGTCAggttt
ttgatatttcaatattttgctatTCCTAATCAAATCTTGTCACTCTGTCA
GAGTTTGGTTATATTTTTGGCAAGATAAAATCTCATTGCTTTCACTTGCT
TCTGATGACAAGCTTTGGCAAAACAGGGGAGCAAAATAGTATGTCAATTT
CAGATTagtatttgaagaaaaaaatcaagaatttaagAGCTGTTAtttat
tttgctcaaaatgCTTATTATATAATATTAGAAAAAAGTGCAAGTGCTgc
gatttttttatattttttgttaaacGATGAATATTCTATAGGAGTTttat
ttttcgcttttttgtGGCACTTATGGTAGAAACAATCTCATTAGGGAGGG
AGTGTGTCGGCGCTAAATATTtggtatttgaaaaaaagaatagaaaatCG
ATCGGATTCcagatttgattgattttttttgctaattttataCCATCGAA
AGACTATTATTTATGTCATAGAATTAGTTATGCGGAAAAATCTTTGGTTG
AATTTGTCcattaatttttagaaattttaggcGTATTTGTAAAGGGAGTG
TTTTTTTCAGTAGTTTTCTTTATAGACAGGATGTTATCGCAATGTTAAAC
AGAAGGTTCCTATACAGGCGTTTTATTATGAGAAAACCAACTTAAAAATA
CATTATAATTTGCAATAAAAATACTTAAACCCGATATTTTACTTTGTTCC
TTTGTTTTACTCCTTTTTCACCTTCTGAGAATTTCGAACAATATTTGTCT
AGTTTTGAGgataattttcttgtttttgaaa
Run BLAST on NCBI

transcript from alignment at scaffold_19:61474..67263-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050901 ID=TCONS_00050901|Name=TCONS_00050901|organism=Clytia hemisphaerica|type=transcript|length=5790bp|location=Sequence derived from alignment at scaffold_19:61474..67263- (Clytia hemisphaerica)
GAGGTTAGCCTCTCAGAGGGTGTATACTTACTTAGATTAAAATCCTGCCG
TGCCGTTGTGACTCAATGACTATGAAATCACCTAGCAATGACTAAAGCAT
ACTACTGTCAACTCTGTCTTCTTCATTAAACTCTGGAAACAATAATCAAA
TCTAAACATTATTTAGACTGAATGAAGAAAAATTAATTATAAAATTAGGG
GAAATATAATATGGCAGCAGATCAAGCATCGCTTCTTCTAAAGAGACAGT
TACAAGGTAATGTTATTGTTTGGCTTCTTCTATCAAAAGGGCTCTAGCCT
CTTGGATCCTTCTTATACTAGAAATATCTTACAAGTTTATCTTGGTAAAC
TGTTTTTCCTAGATTTTAGAACATATCAAACCATAAAGTAGTGATAAGTT
TAGGGAGACAAATACTGCAATAAAGTTTTTCTAGAAATCAGAACACATAA
TTTGTATAAAAAATGGAGAGGTCATAACATTGGGTCTCCTAGAAGATAAG
AACACATATTTCTAAAATATCTCTCCGCCGACTGCTTCTGTACATGCGAA
CTTGCAGGCACAATGCACTTTTCTTGAAATTAAAATTTTATTTAGACTAT
AAACAAAATACCGAAAATATGAAATCATTTTAGTTTGAGTCCCTTATTAA
GGGAACTTATTTTGGCGGGAACTAATTTTGCCGGGCAGCAAAAATCCTAA
AAGAAACTTTTTTTGGCGGGAACTGATTTTGACAAATGACAGTGTAAATT
TGTTCTATTTTGCCTTATTTTGAGCAACTTTGATGAATTGCAGGGTTCAT
TTAGGCAAAAAAAAACAAAAAAAATTTTGGGAACTTATTTTTTGCGAGTG
AGCGAAATATATTTAATTTTGGTGGGAACTAATTTTGGCGAATTTCGTCT
AAATTGGCCAAATCCGCCAAAATAAGTTTTCAGTCAATTCTATTTGCTTT
GTTTCACCATTGATTTTTTTTTTCAATTTAGAATTAACAAAGAAACCGGT
TGAAGGGTTTTCAGCTGGATTGGTTGATGATGAAAATCTTTTCAAATGGG
AGGTAATGGTCATGGGACCAACTGATTCCTTTTAGTAAGTGTGCATGAAG
AAAAAGGACGATTCTAATGCTCTAAGACCAGTAAATCTATAAATCGACCA
GCCTTAAGCTTAGCTGTTCCTAATTTTTTTTTCGTGTTTAGAACCGGCAT
TTCTTATATAGCCATATCTGTAATTTGTTGATAAGTTTGTTCTCAATATG
CTCTTAGGTTTTTAGCAANAAGACACATAATTTTCCCAAAGTATGGTCAA
TTTAGTGGCTGACAGTAAAAATGTCACAAAACGGGTTTATTTTTTATTTG
GATCCGATTTTCGACTGTGTTGAAAATTGGAAAATTGGATTTCACAATTT
CACCCTATCTGGGTGCTCAAAATTAGCCGTAAAATTTGAGGTTAGCCTCT
CAGAGGGTGTATACTTACTTAGATTAAAATCCTGCCGTGCCGTTGTGACT
CAATGACTATGAAATCACCTAGCAATGACTAAAGCATACTACTGTCAACT
CTGTCTTCTTCATTAAACTCTGGAAACAATAATCAAATCTAAACATTATT
TAGACTGAATGAAGAAAAATTAATTATAAAATTAGGGGAAATATAATATG
GCAGCAGATCAAGCATCGCTTCTTCTAAAGAGACAGTTACAAGGTAATGT
TATTGTTTGGCTTCTTCTATCAAAAGGGCTCTAGCCTCTTGGATCCTTCT
TATACTAGAAATATCTTACAAGTTTATCTTGGTAAACTGTTTTTCCTAGA
TTTTAGAACATATCAAACCATAAAGTAGTGATAAGTTTAGGGAGACAAAT
ACTGCAATAAAGTTTTTCTAGAAATCAGAACACATAATTTGTATAAAAAA
TGGAGAGGTCATAACATTGGGTCTCCTAGAAGATAAGAACACATATTTCT
AAAATATCTCTCCGCCGACTGCTTCTGTACATGCGAACTTGCAGGCACAA
TGCACTTTTCTTGAAATTAAAATTTCATTTAGACTAAAAACAAAATACCG
AAAATATGAAATCATTTTAGTTTGAGNCGCCGACTGCTTCTGTACATGCG
AACTTGCAGGCACAATGCACTTTTCTTGAAATTAAAATTTTATTTAGACT
ATAAACAAAATACCGAAAATATGAAATCATTTTAGTTTGAGTCCCTTATT
AAGGGAACTTATTTTGGCGGGAACTAATTTTGCCGGGCAGCAAAAATCCT
AAAAGAAACTTTTTTTGGCGGGAACTGATTTTGACAAATGACAGTGTAAA
TTTGTTCTATTTTGCCTTATTTTGAGCAACTTTGATGAATTGCAGGGTTC
ATTTAGGCAAAAAAAAACAAAAAAAATTTTGGGAACTTATTTTTTGCGAG
TGAGCGAAATATATTTAATTTTGGTGGGAACTAATTTTGGCGAATTTCGT
CTAAATTGGCCAAATCCGCCAAAATAAGTTTTCAGTCAATTCTATTTGCT
TTGTTTCACCATTGATTTTTTTTTTCAATTTAGAATTAACAAAGAAACCG
GTTGAAGGGTTTTCAGCTGGATTGGTTGATGATGAAAATCTTTTCAAATG
GGAGGTAATGGTCATGGGACCAACTGATTCCTTTTAGTAAGTGTGCATGA
AGAAAAAGGACGATTCTAATGCTCTAAGACCAGTAAATCTATAAATCGAC
CAGCCTTAAGCTTAGCTGTTCCTAATTTTTTTTTCGTGTTTAGAACCGGC
ATTTCTTATATAGCCATATCTGTAATTTGTTGATAAGTTTGTTCTCAATA
TGCTCTTAGGTTTTTAGCAATAATGGAGCAAGTGTTCTTTATAATTATCC
TATTCATAAAAAGTGTGTATTGATTAGTACTCACTATAAGTATAANATAA
TGGAGCAAGTGTTTTTTATAATTATCCTATTCATAAAAAGTGTGTATTGA
TTAGTACTCACTATAAGTATAATCTTTCTGAAATTCAGATGGGAAATTCT
TGGAGAGTGGAAATAGAAAATCGCTTGGAATTAAATTGCTTTCTCTTTAT
TTATGAATTCTGACTTACTTACTTTCAGCGAGGGAGGATTTTTCAAAGCA
CACTTAATGTTTCCACAAGATTACCCGCAGAAGCCGCCGAAGATGAAATT
CATCAGTGAATTTTGGCATCCCAACGGTTTGTTATAATACATGAATTTTA
AAGGACCTAAATGTTTTGTTTGGCGAGTATAAACATTTTAGAGAACCTCC
ACTAAAATGAAAATTTGTATTCATTTGAGAAGTTTTTTTGAAATACCAAG
TAAACAAATTTGCATCTACCAGTACTCTAAACTTTTGTATGTACCTTAAA
GGAAGAAATTTTGGCGGGAATTTAATTTGGCGGATGGCCAAAAAAGTTTT
TTCAGAGGGAATTTAATTTGGCGGATGGACGAAAACACTGAATTTGGCGG
GAATTTAATTTGGCGGTCGCTTAAAAATTTAACCTTAAGATGGCGTCAAA
ACAGCGAAAANACGGGAATTTAATTTAGCGGTCGCTTAAAAATTTAACCT
TAAGATGGCGTCAAAACAGCAAAAAAATAGCAAAAACACCTTATAATTTC
AAAATGTTTAATTTGGCGGAAATTTAATTTGGTGGATGGCGGAAAAAAGA
AATTTTGGCGGGAACTTAATTTGGCGGATTTCAGTCAAATCCGCCAAATA
AATTTCCGCCAAAATTACTTCCTTTAAGGTAGTTCTTTTATACCTTGATA
TAAAGTTATATATACCGACTAAAGCTCTACAACCCTATTCGATTGTTAGA
AGGGATCTAGTTAGTATTGACTCCACTCTTTATTTCTTCTAGTATCAAAA
GATGGTGAGGTCTGTATATCTATACTTCACGAGCCAGGAGAAGATAAATT
TGGATATGAGCGAGCAGAGGAAAGATGGTTGCCAATACATACAGTAGAAA
CAATTTTATTATCTGTCATCTCAATGATCAATGAACCAAATGATGAATCA
CCTGCCAATGTAGATGCTGCTGTAAGAAACTAATGTAGAATTGTTTCCCC
TGAATGATTGAGACATGTTTGAGTGGTCGCAAAAGAGAACCCTTCTCCTT
CCTTAATCTTGTTCTGTTCATTTCTTAGGTTGTGAAGCCAACTGCTTACA
CTGGAGTCTATTTCTACTGAATTTTCCTTTCTGATAATTCTAATGGCCCT
GAGCCTAGGGAAGTAGACTAGAGGATTTCGCAATCTTGGATTTTCTTCAC
TTTCGTTTTGAAAAATTATATAAAAATACCCAAACATGAAATATATTCTG
AAATCCCATCAAAGTTTATGAAACTAATGTAATAAAAACATGAAATTACC
TTCAAAGTTTGAAAAAATGGTCTATTTGGTCATGGTTTTTTATTTGTTTT
TCTCCAAAAAGGGACTAGATCTATGGATTTGCTACATTCTCAAGCAAAGC
CAAAAAAATGGAGTCTGTCAAATTACACTAGGCCACTTATCAGCTGCATC
AAGTCTATCAAAAAGCTATTAGTAGCCTCTGGGCTAGCTGCTCCTGAACT
TCGTGATAACTACCAATACCCGGCTAAAGGTCCTTCGTAAACATTCCACC
ATTAAGATTTAGCGTTGTTAATTACCCCTCTCCACACGTTTGCTTTTATA
TGCAAGTTGTTTTATTTCCTGTTTTTTTGTATTTCGATATTACAGAAAGA
ATGGAGAGACGAATACGATACCACGTTTAAGAAGAATGTCCGAAAATGTG
TCCGGAAAAGTCAAGAATTTTTATGATACTAGTTGTTTTTCTTTTTCGAA
ATCATTATAAATAAACCAACAAAAAATCTATGTAAAAATCTTTTCTCTCA
ACTGTATATTATATAAACTTCCAAAAATATCTTTCAATTTAACACAAAAA
TATTTAGCTTTTTTTATTGATGCTATTTCTGAGTTGACAGTTTTTATGTG
ATTTTGTAATTTTAAATTGAGTTTTGTCGTTAGACTCTCTTTAATATTAT
GTCAGGTTTTTGATATTTCAATATTTTGCTATTCCTAATCAAATCTTGTC
ACTCTGTCAGAGTTTGGTTATATTTTTGGCAAGATAAAATCTCATTGCTT
TCACTTGCTTCTGATGACAAGCTTTGGCAAAACAGGGGAGCAAAATAGTA
TGTCAATTTCAGATTAGTATTTGAAGAAAAAAATCAAGAATTTAAGAGCT
GTTATTTATTTTGCTCAAAATGCTTATTATATAATATTAGAAAAAAGTGC
AAGTGCTGCGATTTTTTTATATTTTTTGTTAAACGATGAATATTCTATAG
GAGTTTTATTTTTCGCTTTTTTGTGGCACTTATGGTAGAAACAATCTCAT
TAGGGAGGGAGTGTGTCGGCGCTAAATATTTGGTATTTGAAAAAAAGAAT
AGAAAATCGATCGGATTCCAGATTTGATTGATTTTTTTTGCTAATTTTAT
ACCATCGAAAGACTATTATTTATGTCATAGAATTAGTTATGCGGAAAAAT
CTTTGGTTGAATTTGTCCATTAATTTTTAGAAATTTTAGGCGTATTTGTA
AAGGGAGTGTTTTTTTCAGTAGTTTTCTTTATAGACAGGATGTTATCGCA
ATGTTAAACAGAAGGTTCCTATACAGGCGTTTTATTATGAGAAAACCAAC
TTAAAAATACATTATAATTTGCAATAAAAATACTTAAACCCGATATTTTA
CTTTGTTCCTTTGTTTTACTCCTTTTTCACCTTCTGAGAATTTCGAACAA
TATTTGTCTAGTTTTGAGGATAATTTTCTTGTTTTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032261XLOC_032261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050901-exon-scaffold_19-1575043694:67008..67263TCONS_00050901-exon-scaffold_19-1575043694:67008..67263Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1575043694:64628..64730TCONS_00050901-exon-scaffold_19-1575043694:64628..64730Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1575043694:64088..64185TCONS_00050901-exon-scaffold_19-1575043694:64088..64185Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1575043694:63243..63421TCONS_00050901-exon-scaffold_19-1575043694:63243..63421Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1575043694:61474..62568TCONS_00050901-exon-scaffold_19-1575043694:61474..62568Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1510915933:67008..67263TCONS_00050901-exon-scaffold_19-1510915933:67008..67263Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1510915933:64628..64730TCONS_00050901-exon-scaffold_19-1510915933:64628..64730Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1510915933:64088..64185TCONS_00050901-exon-scaffold_19-1510915933:64088..64185Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1510915933:63243..63421TCONS_00050901-exon-scaffold_19-1510915933:63243..63421Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1510915933:61474..62568TCONS_00050901-exon-scaffold_19-1510915933:61474..62568Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1491911889:67008..67263TCONS_00050901-exon-scaffold_19-1491911889:67008..67263Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1491911889:64628..64730TCONS_00050901-exon-scaffold_19-1491911889:64628..64730Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1491911889:64088..64185TCONS_00050901-exon-scaffold_19-1491911889:64088..64185Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1491911889:63243..63421TCONS_00050901-exon-scaffold_19-1491911889:63243..63421Clytia hemisphaericaexon
TCONS_00050901-exon-scaffold_19-1491911889:61474..62568TCONS_00050901-exon-scaffold_19-1491911889:61474..62568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:61474..67263 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.0297	35.0326	67.6673	84.0485	56.3173	49.9888	31.066	42.7969	14.1659	10.6757	6.1779	8.63735	9.42191	11.2506	6.12273	8.825	20.3192	16.3467	3.23942	9.39645	20.3367	16.4141	29.0644	24.985	34.5149	46.0795	21.2346	8.32294	16.8574	18.4907
Blast
[Close]
BLAST of TCONS_00050901 vs. Swiss-Prot (Human)
Match: UB2G1 (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 2.654e-84
Identity = 116/166 (69.88%), Postives = 144/166 (86.75%), Query Frame = 1 
Query:  211 MAADQASLLLKRQLQELTKKPVEGFSAGLVDDENLFKWEVMVMGPTDSFYEGGFFKAHLMFPQDYPQKPPKMKFISEFWHPNVSKDGEVCISILHEPGEDKFGYERAEERWLPIHTVETILLSVISMINEPNDESPANVDAAKEWRDEYDTTFKKNVRKCVRKSQE 708
            M   Q++LLL+RQL EL K PVEGFSAGL+DD +L++WEV+++GP D+ YEGG FKAHL FP+DYP +PPKMKFI+E WHPNV K+G+VCISILHEPGEDK+GYE+ EERWLPIHTVETI++SVISM+ +PN +SPANVDAAKEWR++ +  FK+ V +CVRKSQE
Sbjct:    1 MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166
The following BLAST results are available for this feature:
BLAST of TCONS_00050901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UB2G12.654e-8469.88Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
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