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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050901 ID=TCONS_00050901|Name=TCONS_00050901|organism=Clytia hemisphaerica|type=transcript|length=1731bp GAGGTTAGCCTCTCAGAGGGTGTATACTTACTTAGATTAAAATCCTGCCG TGCCGTTGTGACTCAATGACTATGAAATCACCTAGCAATGACTAAAGCAT ACTACTGTCAACTCTGTCTTCTTCATTAAACTCTGGAAACAATAATCAAA TCTAAACATTATTTAGActgaatgaagaaaaattaattataaaaTTAGGG GAAATATAATATGGCAGCAGATCAAGCATCGCTTCTTCTAAAGAGACAGT TACAAGaaTTAACAAAGAAACCGGTTGAAGGGTTTTCAGCTGGATTGGTT GATGatgaaaatcttttcaaatggGAGGTAATGGTCATGGGACCAACTGA TTCCTTTTACGAGGGAGGATTTTTCAAAGCACACTTAATGTTTCCACAAG ATTACCCGCAGAAGCCGCCGAAGATGAAATTCATCAGTGAATTTTGGCAT CCCAACGTATCAAAAGATGGTGAGGTCTGTATATCTATACTTCACGAGCC AGGAGAAGATAAATTTGGATATGAGCGAGCAGAGGAAAGATGGTTGCCAA TACATACAGTAGAAACAATTTTATTATCTGTCATCTCAATGATCAATGAA CCAAATGATGAATCACCTGCCAATGTAGATGCTGCTAAAGAATGGAGAGA CGAATACGATACCACGTTTAAGAAGAATGTCCGAAAATGTGTCCGGAAAA GTCAAGAATTTTTATGATACtagttgtttttctttttcgaaatcaTTATA AATAAACCAACAAAAAATCTATGTAAAAATCTTTTCTCTCAACTGTATAT TATATAAACTtccaaaaatatctttcaatttaacacaaaaatatttagct TTTTTTATTGATGCTATTTCTGAGTTGACAGTTTTTAtgtgattttgtaa ttttaaattGAGTTTTGTCGTTAGACTCTCTTTAATATTATGTCAggttt ttgatatttcaatattttgctatTCCTAATCAAATCTTGTCACTCTGTCA GAGTTTGGTTATATTTTTGGCAAGATAAAATCTCATTGCTTTCACTTGCT TCTGATGACAAGCTTTGGCAAAACAGGGGAGCAAAATAGTATGTCAATTT CAGATTagtatttgaagaaaaaaatcaagaatttaagAGCTGTTAtttat tttgctcaaaatgCTTATTATATAATATTAGAAAAAAGTGCAAGTGCTgc gatttttttatattttttgttaaacGATGAATATTCTATAGGAGTTttat ttttcgcttttttgtGGCACTTATGGTAGAAACAATCTCATTAGGGAGGG AGTGTGTCGGCGCTAAATATTtggtatttgaaaaaaagaatagaaaatCG ATCGGATTCcagatttgattgattttttttgctaattttataCCATCGAA AGACTATTATTTATGTCATAGAATTAGTTATGCGGAAAAATCTTTGGTTG AATTTGTCcattaatttttagaaattttaggcGTATTTGTAAAGGGAGTG TTTTTTTCAGTAGTTTTCTTTATAGACAGGATGTTATCGCAATGTTAAAC AGAAGGTTCCTATACAGGCGTTTTATTATGAGAAAACCAACTTAAAAATA CATTATAATTTGCAATAAAAATACTTAAACCCGATATTTTACTTTGTTCC TTTGTTTTACTCCTTTTTCACCTTCTGAGAATTTCGAACAATATTTGTCT AGTTTTGAGgataattttcttgtttttgaaa Run BLAST on NCBI transcript from alignment at scaffold_19:61474..67263- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050901 ID=TCONS_00050901|Name=TCONS_00050901|organism=Clytia hemisphaerica|type=transcript|length=5790bp|location=Sequence derived from alignment at scaffold_19:61474..67263- (Clytia hemisphaerica) GAGGTTAGCCTCTCAGAGGGTGTATACTTACTTAGATTAAAATCCTGCCG
TGCCGTTGTGACTCAATGACTATGAAATCACCTAGCAATGACTAAAGCAT
ACTACTGTCAACTCTGTCTTCTTCATTAAACTCTGGAAACAATAATCAAA
TCTAAACATTATTTAGACTGAATGAAGAAAAATTAATTATAAAATTAGGG
GAAATATAATATGGCAGCAGATCAAGCATCGCTTCTTCTAAAGAGACAGT
TACAAGGTAATGTTATTGTTTGGCTTCTTCTATCAAAAGGGCTCTAGCCT
CTTGGATCCTTCTTATACTAGAAATATCTTACAAGTTTATCTTGGTAAAC
TGTTTTTCCTAGATTTTAGAACATATCAAACCATAAAGTAGTGATAAGTT
TAGGGAGACAAATACTGCAATAAAGTTTTTCTAGAAATCAGAACACATAA
TTTGTATAAAAAATGGAGAGGTCATAACATTGGGTCTCCTAGAAGATAAG
AACACATATTTCTAAAATATCTCTCCGCCGACTGCTTCTGTACATGCGAA
CTTGCAGGCACAATGCACTTTTCTTGAAATTAAAATTTTATTTAGACTAT
AAACAAAATACCGAAAATATGAAATCATTTTAGTTTGAGTCCCTTATTAA
GGGAACTTATTTTGGCGGGAACTAATTTTGCCGGGCAGCAAAAATCCTAA
AAGAAACTTTTTTTGGCGGGAACTGATTTTGACAAATGACAGTGTAAATT
TGTTCTATTTTGCCTTATTTTGAGCAACTTTGATGAATTGCAGGGTTCAT
TTAGGCAAAAAAAAACAAAAAAAATTTTGGGAACTTATTTTTTGCGAGTG
AGCGAAATATATTTAATTTTGGTGGGAACTAATTTTGGCGAATTTCGTCT
AAATTGGCCAAATCCGCCAAAATAAGTTTTCAGTCAATTCTATTTGCTTT
GTTTCACCATTGATTTTTTTTTTCAATTTAGAATTAACAAAGAAACCGGT
TGAAGGGTTTTCAGCTGGATTGGTTGATGATGAAAATCTTTTCAAATGGG
AGGTAATGGTCATGGGACCAACTGATTCCTTTTAGTAAGTGTGCATGAAG
AAAAAGGACGATTCTAATGCTCTAAGACCAGTAAATCTATAAATCGACCA
GCCTTAAGCTTAGCTGTTCCTAATTTTTTTTTCGTGTTTAGAACCGGCAT
TTCTTATATAGCCATATCTGTAATTTGTTGATAAGTTTGTTCTCAATATG
CTCTTAGGTTTTTAGCAANAAGACACATAATTTTCCCAAAGTATGGTCAA
TTTAGTGGCTGACAGTAAAAATGTCACAAAACGGGTTTATTTTTTATTTG
GATCCGATTTTCGACTGTGTTGAAAATTGGAAAATTGGATTTCACAATTT
CACCCTATCTGGGTGCTCAAAATTAGCCGTAAAATTTGAGGTTAGCCTCT
CAGAGGGTGTATACTTACTTAGATTAAAATCCTGCCGTGCCGTTGTGACT
CAATGACTATGAAATCACCTAGCAATGACTAAAGCATACTACTGTCAACT
CTGTCTTCTTCATTAAACTCTGGAAACAATAATCAAATCTAAACATTATT
TAGACTGAATGAAGAAAAATTAATTATAAAATTAGGGGAAATATAATATG
GCAGCAGATCAAGCATCGCTTCTTCTAAAGAGACAGTTACAAGGTAATGT
TATTGTTTGGCTTCTTCTATCAAAAGGGCTCTAGCCTCTTGGATCCTTCT
TATACTAGAAATATCTTACAAGTTTATCTTGGTAAACTGTTTTTCCTAGA
TTTTAGAACATATCAAACCATAAAGTAGTGATAAGTTTAGGGAGACAAAT
ACTGCAATAAAGTTTTTCTAGAAATCAGAACACATAATTTGTATAAAAAA
TGGAGAGGTCATAACATTGGGTCTCCTAGAAGATAAGAACACATATTTCT
AAAATATCTCTCCGCCGACTGCTTCTGTACATGCGAACTTGCAGGCACAA
TGCACTTTTCTTGAAATTAAAATTTCATTTAGACTAAAAACAAAATACCG
AAAATATGAAATCATTTTAGTTTGAGNCGCCGACTGCTTCTGTACATGCG
AACTTGCAGGCACAATGCACTTTTCTTGAAATTAAAATTTTATTTAGACT
ATAAACAAAATACCGAAAATATGAAATCATTTTAGTTTGAGTCCCTTATT
AAGGGAACTTATTTTGGCGGGAACTAATTTTGCCGGGCAGCAAAAATCCT
AAAAGAAACTTTTTTTGGCGGGAACTGATTTTGACAAATGACAGTGTAAA
TTTGTTCTATTTTGCCTTATTTTGAGCAACTTTGATGAATTGCAGGGTTC
ATTTAGGCAAAAAAAAACAAAAAAAATTTTGGGAACTTATTTTTTGCGAG
TGAGCGAAATATATTTAATTTTGGTGGGAACTAATTTTGGCGAATTTCGT
CTAAATTGGCCAAATCCGCCAAAATAAGTTTTCAGTCAATTCTATTTGCT
TTGTTTCACCATTGATTTTTTTTTTCAATTTAGAATTAACAAAGAAACCG
GTTGAAGGGTTTTCAGCTGGATTGGTTGATGATGAAAATCTTTTCAAATG
GGAGGTAATGGTCATGGGACCAACTGATTCCTTTTAGTAAGTGTGCATGA
AGAAAAAGGACGATTCTAATGCTCTAAGACCAGTAAATCTATAAATCGAC
CAGCCTTAAGCTTAGCTGTTCCTAATTTTTTTTTCGTGTTTAGAACCGGC
ATTTCTTATATAGCCATATCTGTAATTTGTTGATAAGTTTGTTCTCAATA
TGCTCTTAGGTTTTTAGCAATAATGGAGCAAGTGTTCTTTATAATTATCC
TATTCATAAAAAGTGTGTATTGATTAGTACTCACTATAAGTATAANATAA
TGGAGCAAGTGTTTTTTATAATTATCCTATTCATAAAAAGTGTGTATTGA
TTAGTACTCACTATAAGTATAATCTTTCTGAAATTCAGATGGGAAATTCT
TGGAGAGTGGAAATAGAAAATCGCTTGGAATTAAATTGCTTTCTCTTTAT
TTATGAATTCTGACTTACTTACTTTCAGCGAGGGAGGATTTTTCAAAGCA
CACTTAATGTTTCCACAAGATTACCCGCAGAAGCCGCCGAAGATGAAATT
CATCAGTGAATTTTGGCATCCCAACGGTTTGTTATAATACATGAATTTTA
AAGGACCTAAATGTTTTGTTTGGCGAGTATAAACATTTTAGAGAACCTCC
ACTAAAATGAAAATTTGTATTCATTTGAGAAGTTTTTTTGAAATACCAAG
TAAACAAATTTGCATCTACCAGTACTCTAAACTTTTGTATGTACCTTAAA
GGAAGAAATTTTGGCGGGAATTTAATTTGGCGGATGGCCAAAAAAGTTTT
TTCAGAGGGAATTTAATTTGGCGGATGGACGAAAACACTGAATTTGGCGG
GAATTTAATTTGGCGGTCGCTTAAAAATTTAACCTTAAGATGGCGTCAAA
ACAGCGAAAANACGGGAATTTAATTTAGCGGTCGCTTAAAAATTTAACCT
TAAGATGGCGTCAAAACAGCAAAAAAATAGCAAAAACACCTTATAATTTC
AAAATGTTTAATTTGGCGGAAATTTAATTTGGTGGATGGCGGAAAAAAGA
AATTTTGGCGGGAACTTAATTTGGCGGATTTCAGTCAAATCCGCCAAATA
AATTTCCGCCAAAATTACTTCCTTTAAGGTAGTTCTTTTATACCTTGATA
TAAAGTTATATATACCGACTAAAGCTCTACAACCCTATTCGATTGTTAGA
AGGGATCTAGTTAGTATTGACTCCACTCTTTATTTCTTCTAGTATCAAAA
GATGGTGAGGTCTGTATATCTATACTTCACGAGCCAGGAGAAGATAAATT
TGGATATGAGCGAGCAGAGGAAAGATGGTTGCCAATACATACAGTAGAAA
CAATTTTATTATCTGTCATCTCAATGATCAATGAACCAAATGATGAATCA
CCTGCCAATGTAGATGCTGCTGTAAGAAACTAATGTAGAATTGTTTCCCC
TGAATGATTGAGACATGTTTGAGTGGTCGCAAAAGAGAACCCTTCTCCTT
CCTTAATCTTGTTCTGTTCATTTCTTAGGTTGTGAAGCCAACTGCTTACA
CTGGAGTCTATTTCTACTGAATTTTCCTTTCTGATAATTCTAATGGCCCT
GAGCCTAGGGAAGTAGACTAGAGGATTTCGCAATCTTGGATTTTCTTCAC
TTTCGTTTTGAAAAATTATATAAAAATACCCAAACATGAAATATATTCTG
AAATCCCATCAAAGTTTATGAAACTAATGTAATAAAAACATGAAATTACC
TTCAAAGTTTGAAAAAATGGTCTATTTGGTCATGGTTTTTTATTTGTTTT
TCTCCAAAAAGGGACTAGATCTATGGATTTGCTACATTCTCAAGCAAAGC
CAAAAAAATGGAGTCTGTCAAATTACACTAGGCCACTTATCAGCTGCATC
AAGTCTATCAAAAAGCTATTAGTAGCCTCTGGGCTAGCTGCTCCTGAACT
TCGTGATAACTACCAATACCCGGCTAAAGGTCCTTCGTAAACATTCCACC
ATTAAGATTTAGCGTTGTTAATTACCCCTCTCCACACGTTTGCTTTTATA
TGCAAGTTGTTTTATTTCCTGTTTTTTTGTATTTCGATATTACAGAAAGA
ATGGAGAGACGAATACGATACCACGTTTAAGAAGAATGTCCGAAAATGTG
TCCGGAAAAGTCAAGAATTTTTATGATACTAGTTGTTTTTCTTTTTCGAA
ATCATTATAAATAAACCAACAAAAAATCTATGTAAAAATCTTTTCTCTCA
ACTGTATATTATATAAACTTCCAAAAATATCTTTCAATTTAACACAAAAA
TATTTAGCTTTTTTTATTGATGCTATTTCTGAGTTGACAGTTTTTATGTG
ATTTTGTAATTTTAAATTGAGTTTTGTCGTTAGACTCTCTTTAATATTAT
GTCAGGTTTTTGATATTTCAATATTTTGCTATTCCTAATCAAATCTTGTC
ACTCTGTCAGAGTTTGGTTATATTTTTGGCAAGATAAAATCTCATTGCTT
TCACTTGCTTCTGATGACAAGCTTTGGCAAAACAGGGGAGCAAAATAGTA
TGTCAATTTCAGATTAGTATTTGAAGAAAAAAATCAAGAATTTAAGAGCT
GTTATTTATTTTGCTCAAAATGCTTATTATATAATATTAGAAAAAAGTGC
AAGTGCTGCGATTTTTTTATATTTTTTGTTAAACGATGAATATTCTATAG
GAGTTTTATTTTTCGCTTTTTTGTGGCACTTATGGTAGAAACAATCTCAT
TAGGGAGGGAGTGTGTCGGCGCTAAATATTTGGTATTTGAAAAAAAGAAT
AGAAAATCGATCGGATTCCAGATTTGATTGATTTTTTTTGCTAATTTTAT
ACCATCGAAAGACTATTATTTATGTCATAGAATTAGTTATGCGGAAAAAT
CTTTGGTTGAATTTGTCCATTAATTTTTAGAAATTTTAGGCGTATTTGTA
AAGGGAGTGTTTTTTTCAGTAGTTTTCTTTATAGACAGGATGTTATCGCA
ATGTTAAACAGAAGGTTCCTATACAGGCGTTTTATTATGAGAAAACCAAC
TTAAAAATACATTATAATTTGCAATAAAAATACTTAAACCCGATATTTTA
CTTTGTTCCTTTGTTTTACTCCTTTTTCACCTTCTGAGAATTTCGAACAA
TATTTGTCTAGTTTTGAGGATAATTTTCTTGTTTTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050901-exon-scaffold_19-1575043694:67008..67263 | TCONS_00050901-exon-scaffold_19-1575043694:67008..67263 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1575043694:64628..64730 | TCONS_00050901-exon-scaffold_19-1575043694:64628..64730 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1575043694:64088..64185 | TCONS_00050901-exon-scaffold_19-1575043694:64088..64185 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1575043694:63243..63421 | TCONS_00050901-exon-scaffold_19-1575043694:63243..63421 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1575043694:61474..62568 | TCONS_00050901-exon-scaffold_19-1575043694:61474..62568 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1510915933:67008..67263 | TCONS_00050901-exon-scaffold_19-1510915933:67008..67263 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1510915933:64628..64730 | TCONS_00050901-exon-scaffold_19-1510915933:64628..64730 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1510915933:64088..64185 | TCONS_00050901-exon-scaffold_19-1510915933:64088..64185 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1510915933:63243..63421 | TCONS_00050901-exon-scaffold_19-1510915933:63243..63421 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1510915933:61474..62568 | TCONS_00050901-exon-scaffold_19-1510915933:61474..62568 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1491911889:67008..67263 | TCONS_00050901-exon-scaffold_19-1491911889:67008..67263 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1491911889:64628..64730 | TCONS_00050901-exon-scaffold_19-1491911889:64628..64730 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1491911889:64088..64185 | TCONS_00050901-exon-scaffold_19-1491911889:64088..64185 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1491911889:63243..63421 | TCONS_00050901-exon-scaffold_19-1491911889:63243..63421 | Clytia hemisphaerica | exon |
TCONS_00050901-exon-scaffold_19-1491911889:61474..62568 | TCONS_00050901-exon-scaffold_19-1491911889:61474..62568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_19 | supercontig | scaffold_19:61474..67263 - |
Blast
BLAST of TCONS_00050901 vs. Swiss-Prot (Human)
Match: UB2G1 (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3) HSP 1 Score: 263.848 bits (673), Expect = 2.654e-84 Identity = 116/166 (69.88%), Postives = 144/166 (86.75%), Query Frame = 1
Query: 211 MAADQASLLLKRQLQELTKKPVEGFSAGLVDDENLFKWEVMVMGPTDSFYEGGFFKAHLMFPQDYPQKPPKMKFISEFWHPNVSKDGEVCISILHEPGEDKFGYERAEERWLPIHTVETILLSVISMINEPNDESPANVDAAKEWRDEYDTTFKKNVRKCVRKSQE 708
M Q++LLL+RQL EL K PVEGFSAGL+DD +L++WEV+++GP D+ YEGG FKAHL FP+DYP +PPKMKFI+E WHPNV K+G+VCISILHEPGEDK+GYE+ EERWLPIHTVETI++SVISM+ +PN +SPANVDAAKEWR++ + FK+ V +CVRKSQE
Sbjct: 1 MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166
The following BLAST results are available for this feature:
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