TCONS_00050855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050855
Unique NameTCONS_00050855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050855 ID=TCONS_00050855|Name=TCONS_00050855|organism=Clytia hemisphaerica|type=transcript|length=2778bp
TTGAACTGTGCACAAAATATCATCATAAATTAAATTCACATAAGCATAAA
GAtccttttttatataaaatagataaaaattttTAGCCCTTACAGTAGAG
tcacaaaatatttatttgtagTTTAANTTTTTATataaaatagataaaat
ttTTTAGCCCTTACAGTAGAGtcacaaaatatttatttgtagtttaaaaa
taatattaacTACAAGAAGCTATATAGACCTTATGTTTTTTcacaaacaa
aatgtttttcagACTGCACAttaaaaaacgaaagtaaaaaatcaattaaa
agaaaatgaaatatattaCAGTATTGAGACgtattaaaaaaagtaaaact
ataaaaaagttttttttccatttctatcCAATAATAATTTCTGTGGTTGG
TAGTAATAAAAATCCtggtttcaatttcaaaaatcttatcaaAGAGAACA
TTAAAagttcttcaaaaaatttgtggGTTCACAAAACCTCTTCTACTTTG
TATCAAACTGGAATCCCTTTCTTTTAGTTTACGTATTAATTTCTGTCAAA
AACATCTTATtatagacaaaaaaaaattatgggaAAATCTGCTTTCCAAG
TTGTCTATCATAAACATCTACAAAATATTCCGTTTCAATTGTTCCATTAT
CATTTCCAGGTGACAATATCACTCCATTATctgattcaaaaaatttaata
cCGTCTTTTAAGGCTTGATTACCATTGATTGTAATGATTATATTAGATGA
TGATCTTGCTCCGCTTTTTGCTTCACCGAAATTTCCTCTAGCCATGTGAA
TATGATTACGTTTCATTTTATTTAACCCTGATGATTTTATGAATTGCCAA
GCTTGTTGTGTTGTCCCATGAATTATTTTACCAGAAGGTCCATCTTCGAA
ATGTTCAATAACCTTCAGATCAGCAGACTCCACATCTTTTAAAGTATGTC
CTTGATTAGCCCTTATAAATTTCACCccatcaatttcaacaattttaaAT
CGTTGTTTCTTACAATTTTTGACAATATCTTCTATTCGAGGTGTAGTTAT
GGTTTGTTTTGGTAACATTTTTCTAATAGTTTTAATAACATCATCAAGCT
TTGAGAAACCATTAGTGTCCATTTTCAATCTATGTTCCTTGGAGCCATGC
CGTAATAAATATGACAAAGTCTTACTCAATTGAGTTGCTTCTCTGTCAGC
TCTTGAAGCCATAATTTGGTAGGATTTTAAATTACTAAATTCAATAAACT
GTAGTTTTCTTTTACAATAGAACTAAAAAAAAGGACACCAAGCAGATTAA
GCAATAATTTTAAACTCTGATATAATATGCATGATAACTTAAGCAAGGTC
CAAAGTCTTGGTGATGCTTTTTTGTACATATAATTTAGTTaggttttcat
tttctttgattgaTAACGTTAAAGTTTCATTTTCTTAGCTTTTTTAACGA
AGGTCATCATGCGATCTGTAAAATGTAATAGTAATTGGAATAAACAAACT
GTCTCTTGAGGagcattgaataaaaaaatattccaaactctaccccggat
aactgccagtagcagagaaaaaaacaaaatgtttacaAGATTCCCTCACC
AAATTCAACACTAAATTCTGAAAAGAgatctttcaaaacaaaatagaatT
ATTATTGACCTGTTTCCGGTGTGTGTAATGACATCCTCTAATGTTTCCCT
TGAATCCATTTATGAGGATTTAGCGCAGTTTATGCTTTTAAAAACCAACT
CCAGCATTCAAACAATGACACATTTTAAAATGCTTAACTGTTGTAAAAGT
GtcctaatttttttcttatcattGCTTTGATGCTGGAgttatttaattat
tcaacatgacatcctgaATTTGGTCGCGCTATTGATACTTGAACCATTTG
GACGTTAACTGAACTTAATTAAACAAAAGCTATATCCgaagggggtacta
ggtttgcgacaCGTATATGTCCAAGCCAAAAAATTGACCCTTAGAGAATA
GAAAAATAggcgtttttgggacccttagagatTACCACATTGCCTCACAC
Agttcttgaaaagaaaattttctccgtttttccattttttggaaaaaagt
tgcccagattttctgatttttgggaaaaaagtttccctgattttccaaat
tttaggaaaaaagttttcccgatttccaattttctggaaaatattcaatt
ttgtttagaaatttttatctcaagcaaaaaatgaACATCTCAAGTTGGCA
GGTCTACAGTAAGAGActcaatttgtttttatttaaatggTTTTTGTAAT
TATGATGGGCGAGCCCCCTTCGCTAAGATGttgacttaaaattaaaaatg
aaaccacagaaaacaaaagtgaaatcGGACCACACTCtaaatcctgtaat
cttgatagAGAGGAGTTTTATTAGTCTATAATACTGTCTTTACTAAAGAA
GATGCtggtgtttgagaaaaaaatttctcatgTACTACCTGTGTGTGGAA
ATaaaaaggttcagaaattatctgctaaaatagaaatgtaaagttgttct
attataaattgatcaagTCAAGTTTGTCCAAGATCATTCTTCCAAACTTC
TTGGaatgaattgaaatcctaccagatcccactgaaataaaggtttatcg
agtcaatgtaaacatttgaacatttgaattcaaacattcaacattCGTAC
ATTAGaagtgccaactctcacgcattggttgtgagactcatgcatttcca
catggtctcacgtaatttttgaaaagtt
Run BLAST on NCBI

protein sequence of TCONS_00050855-protein

>TCONS_00050855-protein ID=TCONS_00050855-protein|Name=TCONS_00050855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MASRADREATQLSKTLSYLLRHGSKEHRLKMDTNGFSKLDDVIKTIRKML
PKQTITTPRIEDIVKNCKKQRFKIVEIDGVKFIRANQGHTLKDVESADLK
VIEHFEDGPSGKIIHGTTQQAWQFIKSSGLNKMKRNHIHMARGNFGEAKS
GARSSSNIIITINGNQALKDGIKFFESDNGVILSPGNDNGTIETEYFVDV
YDRQLGKQIFP
Run BLAST on NCBI

transcript from alignment at scaffold_189:243064..245841

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050855 ID=TCONS_00050855|Name=TCONS_00050855|organism=Clytia hemisphaerica|type=transcript|length=2778bp|location=Sequence derived from alignment at scaffold_189:243064..245841 (Clytia hemisphaerica)
aacttttcaaaaattacgtgagaccatgtggaaatgcatgagtctcacaa
ccaatgcgtgagagttggcacttCTAATGTACGaatgttgaatgtttgaa
ttcaaatgttcaaatgtttacattgactcgataaacctttatttcagtgg
gatctggtaggatttcaattcattCCAAGAAGTTTGGAAGAATGATCTTG
GACAAACTTGActtgatcaatttataatagaacaactttacatttctatt
ttagcagataatttctgaacctttttATTTCCACACACAGGTAGTAcatg
agaaatttttttctcaaacaccaGCATCTTCTTTAGTAAAGACAGTATTA
TAGACTAATAAAACTCCTCTctatcaagattacaggatttaGAGTGTGGT
CCgatttcacttttgttttctgtggtttcatttttaattttaagtcaaCA
TCTTAGCGAAGGGGGCTCGCCCATCATAATTACAAAAAccatttaaataa
aaacaaattgagTCTCTTACTGTAGACCTGCCAACTTGAGATGTtcattt
tttgcttgagataaaaatttctaaacaaaattgaatattttccagaaaat
tggaaatcgggaaaacttttttcctaaaatttggaaaatcagggaaactt
ttttcccaaaaatcagaaaatctgggcaacttttttccaaaaaatggaaa
aacggagaaaattttcttttcaagaacTGTGTGAGGCAATGTGGTAatct
ctaagggtcccaaaaacgccTATTTTTCTATTCTCTAAGGGTCAATTTTT
TGGCTTGGACATATACGtgtcgcaaacctagtacccccttcGGATATAGC
TTTTGTTTAATTAAGTTCAGTTAACGTCCAAATGGTTCAAGTATCAATAG
CGCGACCAAATtcaggatgtcatgttgaataattaaataacTCCAGCATC
AAAGCaatgataagaaaaaaattaggaCACTTTTACAACAGTTAAGCATT
TTAAAATGTGTCATTGTTTGAATGCTGGAGTTGGTTTTTAAAAGCATAAA
CTGCGCTAAATCCTCATAAATGGATTCAAGGGAAACATTAGAGGATGTCA
TTACACACACCGGAAACAGGTCAATAATAattctattttgttttgaaaga
tcTCTTTTCAGAATTTAGTGTTGAATTTGGTGAGGGAATCTtgtaaacat
tttgtttttttctctgctactggcagttatccggggtagagtttggaata
tttttttattcaatgctCCTCAAGAGACAGTTTGTTTATTCCAATTACTA
TTACATTTTACAGATCGCATGATGACCTTCGTTAAAAAAGCTAAGAAAAT
GAAACTTTAACGTTAtcaatcaaagaaaatgaaaacctAACTAAATTATA
TGTACAAAAAAGCATCACCAAGACTTTGGACCTTGCTTAAGTTATCATGC
ATATTATATCAGAGTTTAAAATTATTGCTTAATCTGCTTGGTGTCCTTTT
TTTTAGTTCTATTGTAAAAGAAAACTACAGTTTATTGAATTTAGTAATTT
AAAATCCTACCAAATTATGGCTTCAAGAGCTGACAGAGAAGCAACTCAAT
TGAGTAAGACTTTGTCATATTTATTACGGCATGGCTCCAAGGAACATAGA
TTGAAAATGGACACTAATGGTTTCTCAAAGCTTGATGATGTTATTAAAAC
TATTAGAAAAATGTTACCAAAACAAACCATAACTACACCTCGAATAGAAG
ATATTGTCAAAAATTGTAAGAAACAACGATttaaaattgttgaaattgat
ggGGTGAAATTTATAAGGGCTAATCAAGGACATACTTTAAAAGATGTGGA
GTCTGCTGATCTGAAGGTTATTGAACATTTCGAAGATGGACCTTCTGGTA
AAATAATTCATGGGACAACACAACAAGCTTGGCAATTCATAAAATCATCA
GGGTTAAATAAAATGAAACGTAATCATATTCACATGGCTAGAGGAAATTT
CGGTGAAGCAAAAAGCGGAGCAAGATCATCATCTAATATAATCATTACAA
TCAATGGTAATCAAGCCTTAAAAGACGgtattaaattttttgaatcagAT
AATGGAGTGATATTGTCACCTGGAAATGATAATGGAACAATTGAAACGGA
ATATTTTGTAGATGTTTATGATAGACAACTTGGAAAGCAGATTTtcccat
aatttttttttgtctataATAAGATGTTTTTGACAGAAATTAATACGTAA
ACTAAAAGAAAGGGATTCCAGTTTGATACAAAGTAGAAGAGGTTTTGTGA
ACccacaaattttttgaagaactTTTAATGTTCTCTttgataagattttt
gaaattgaaaccaGGATTTTTATTACTACCAACCACAGAAATTATTATTG
gatagaaatggaaaaaaaacttttttatagttttactttttttaatacGT
CTCAATACTGtaatatatttcattttcttttaattgattttttactttcg
ttttttaaTGTGCAGTctgaaaaacattttgtttgtgAAAAAACATAAGG
TCTATATAGCTTCTTGTAgttaatattatttttaaactacaaataaatat
tttgtgaCTCTACTGTAAGGGCTAAAaaattttatctattttatATAAAA
ANTTAAActacaaataaatattttgtgaCTCTACTGTAAGGGCTAaaaat
ttttatctattttatataaaaaaggaTCTTTATGCTTATGTGAATTTAAT
TTATGATGATATTTTGTGCACAGTTCAA

Coding sequence (CDS) from alignment at scaffold_189:243064..245841

>TCONS_00050855 ID=TCONS_00050855|Name=TCONS_00050855|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_189:243064..245841 (Clytia hemisphaerica)
ATGGCTTCAAGAGCTGACAGAGAAGCAACTCAATTGAGTAAGACTTTGTC
ATATTTATTACGGCATGGCTCCAAGGAACATAGATTGAAAATGGACACTA
ATGGTTTCTCAAAGCTTGATGATGTTATTAAAACTATTAGAAAAATGTTA
CCAAAACAAACCATAACTACACCTCGAATAGAAGATATTGTCAAAAATTG
TAAGAAACAACGATttaaaattgttgaaattgatggGGTGAAATTTATAA
GGGCTAATCAAGGACATACTTTAAAAGATGTGGAGTCTGCTGATCTGAAG
GTTATTGAACATTTCGAAGATGGACCTTCTGGTAAAATAATTCATGGGAC
AACACAACAAGCTTGGCAATTCATAAAATCATCAGGGTTAAATAAAATGA
AACGTAATCATATTCACATGGCTAGAGGAAATTTCGGTGAAGCAAAAAGC
GGAGCAAGATCATCATCTAATATAATCATTACAATCAATGGTAATCAAGC
CTTAAAAGACGgtattaaattttttgaatcagATAATGGAGTGATATTGT
CACCTGGAAATGATAATGGAACAATTGAAACGGAATATTTTGTAGATGTT
TATGATAGACAACTTGGAAAGCAGATTTtcccataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032225XLOC_032225Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050855-proteinTCONS_00050855-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050855-exon-scaffold_189-1491911889:243064..245841TCONS_00050855-exon-scaffold_189-1491911889:243064..245841Clytia hemisphaericaexon
TCONS_00050855-exon-scaffold_189-1510915933:243064..245841TCONS_00050855-exon-scaffold_189-1510915933:243064..245841Clytia hemisphaericaexon
TCONS_00050855-exon-scaffold_189-1575043694:243064..245841TCONS_00050855-exon-scaffold_189-1575043694:243064..245841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:243064..245841 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1159	2.07053	2.28986	2.72733	5.96344	3.81725	3.53461	3.39453	2.22787	2.94557	6.14509	1.17028	2.20521	1.31349	1.10013	1.49614	1.01912	1.47681	1.32974	4.17189	1.49311	1.7845	8.03724	7.76679	1.62599	4.00889	9.89264	7.95052	10.8802	7.95522
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002745Ptrans_KptA/Tpt1
Vocabulary: Biological Process
TermDefinition
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Vocabulary: Molecular Function
TermDefinition
GO:0016772transferase activity, transferring phosphorus-containing groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
molecular_function GO:0016772 transferase activity, transferring phosphorus-containing groups
Blast
[Close]
BLAST of TCONS_00050855 vs. Swiss-Prot (Human)
Match: TRPT1 (tRNA 2'-phosphotransferase 1 OS=Homo sapiens GN=TRPT1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.207e-25
Identity = 78/197 (39.59%), Postives = 110/197 (55.84%), Query Frame = -1 
Query:  622 DREATQLSKTLSYLLRHGSKEHRLKMDTNGFSKLDDVIKTIRKMLPK-QTITTPRIEDIVKNCKKQRFKIVEIDGVK--FIRANQGHTLKDVESADLKVIEHFEDGPSGKIIHGTTQQAWQFIKSSGLNKMKRNHIHMARGNFGEAK--SGARXXXXXXXXXXXNQALKDGIKFFESDNGVILSPGNDNGTIETEYF 1197
            DR+  QLSK LSY LRHG+ +  L M  +GF  L  +++     LP+ +  +   ++ +V   +KQRF +   D      IRANQGH+L+ V   +L  +E  +  P   ++HGT  + W  I   GL+   R HIH+A G  G+    SG RS   I + I+G  AL DGI FF S NGVIL+PGN +G +  +YF
Sbjct:   26 DRD-VQLSKALSYALRHGALKLGLPMGADGFVPLGTLLQ-----LPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ-VPKLELMPLETPQALPP-MLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYF 214
The following BLAST results are available for this feature:
BLAST of TCONS_00050855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRPT11.207e-2539.59tRNA 2'-phosphotransferase 1 OS=Homo sapiens GN=TR... [more]
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