TCONS_00050851 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050851
Unique NameTCONS_00050851
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050851 ID=TCONS_00050851|Name=TCONS_00050851|organism=Clytia hemisphaerica|type=transcript|length=396bp
TCTTACCACAAAGAGACTGGCTTTCGTTATATCTGCTGCGGAAATCACCA
TCAGACTTTCTAAAGGAGGCACTATGTCACTTGTGGATTGGTCAAAATTC
TCGGTAGCTGCTCGTGATTGGCTAATTCTTTCGTAAATGGATTCTGATTG
GatagaattctttttgattgtttttgattGATCGGTGAGCTTCTCTGTTG
ATGTTGTTTGCGATTTCAAACTTCCAGTTGAAAAATGACCTCTACTTGAT
ACGATTTCTTCTGGAATAGTTTTAGTGTATTTTTCTTTTACCCTTGGCGA
AGGAGTTGGTGTGATTGTCGCCACTTGTGAAGAAACTTCTTCTTGACATT
TATCAAAATCTTCTTGAATTTTGTTGGGTTTATCAGTTAATACTGT
Run BLAST on NCBI

protein sequence of TCONS_00050851-protein

>TCONS_00050851-protein ID=TCONS_00050851-protein|Name=TCONS_00050851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
TVLTDKPNKIQEDFDKCQEEVSSQVATITPTPSPRVKEKYTKTIPEEIVS
SRGHFSTGSLKSQTTSTEKLTDQSKTIKKNSIQSESIYERISQSRAATEN
FDQSTSDIVPPLESLMVISAADITKASLFVVR
Run BLAST on NCBI

transcript from alignment at scaffold_189:202613..203008

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050851 ID=TCONS_00050851|Name=TCONS_00050851|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at scaffold_189:202613..203008 (Clytia hemisphaerica)
ACAGTATTAACTGATAAACCCAACAAAATTCAAGAAGATTTTGATAAATG
TCAAGAAGAAGTTTCTTCACAAGTGGCGACAATCACACCAACTCCTTCGC
CAAGGGTAAAAGAAAAATACACTAAAACTATTCCAGAAGAAATCGTATCA
AGTAGAGGTCATTTTTCAACTGGAAGTTTGAAATCGCAAACAACATCAAC
AGAGAAGCTCACCGATCaatcaaaaacaatcaaaaagaattctatCCAAT
CAGAATCCATTTACGAAAGAATTAGCCAATCACGAGCAGCTACCGAGAAT
TTTGACCAATCCACAAGTGACATAGTGCCTCCTTTAGAAAGTCTGATGGT
GATTTCCGCAGCAGATATAACGAAAGCCAGTCTCTTTGTGGTAAGA

Coding sequence (CDS) from alignment at scaffold_189:202613..203008

>TCONS_00050851 ID=TCONS_00050851|Name=TCONS_00050851|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_189:202613..203008 (Clytia hemisphaerica)
ACAGTATTAACTGATAAACCCAACAAAATTCAAGAAGATTTTGATAAATG
TCAAGAAGAAGTTTCTTCACAAGTGGCGACAATCACACCAACTCCTTCGC
CAAGGGTAAAAGAAAAATACACTAAAACTATTCCAGAAGAAATCGTATCA
AGTAGAGGTCATTTTTCAACTGGAAGTTTGAAATCGCAAACAACATCAAC
AGAGAAGCTCACCGATCaatcaaaaacaatcaaaaagaattctatCCAAT
CAGAATCCATTTACGAAAGAATTAGCCAATCACGAGCAGCTACCGAGAAT
TTTGACCAATCCACAAGTGACATAGTGCCTCCTTTAGAAAGTCTGATGGT
GATTTCCGCAGCAGATATAACGAAAGCCAGTCTCTTTGTGGTAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032221XLOC_032221Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050851-exon-scaffold_189-1491911889:202613..203008TCONS_00050851-exon-scaffold_189-1491911889:202613..203008Clytia hemisphaericaexon
TCONS_00050851-exon-scaffold_189-1510915933:202613..203008TCONS_00050851-exon-scaffold_189-1510915933:202613..203008Clytia hemisphaericaexon
TCONS_00050851-exon-scaffold_189-1575043694:202613..203008TCONS_00050851-exon-scaffold_189-1575043694:202613..203008Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050851-proteinTCONS_00050851-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:202613..203008 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.189721	0	0.214811	0	1.53509	0.808701	9.2688	7.99228	2.87773	2.57438	5.38195	1.76894	7.57063	6.1587	9.04929	7.63028	5.26963	9.63458	10.2855	9.07475	5.68641	5.90515	3.69801	4.15309	4.68497	7.08991	0.780434	0.277633	4.2115	2.57451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top