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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050829 ID=TCONS_00050829|Name=TCONS_00050829|organism=Clytia hemisphaerica|type=transcript|length=1475bp
GCAACAGGTTTGAAAAACACGATCCAAATAAGACCAATAAAAGCAATAGA
TGTATCTACACATCCTGGTTATGTGTCTGGTGGCTTTACCGATACATTGT
GATGGTGTTGATAATAGTACTTCTACTAAAGATAGTTCCACTGGTGGTAG
ATCTCAGACTTTCTTGGCTGTCGCGTTGACCGTTGTCATTACTGGATTTA
TCATATTGTTGATGATCATTTTCGCTTTGCTCCTTATTCAAAGAAGAACG
ACGAAAGTCTGTTACGTTCAACGGACACCAGAGGTGATCACCACAGATCG
AAACAGAAATCCGACACTTAAAAACATAACAAACATCACTGAAATATATG
ATGAAAGTTTCTTAGATCAAGTAACGTTACAAAGATGGCAGTCTAAACGG
AGCGAAATGAGAGCGAATACGCCAAGTATTAGAAGCACGAACAGTTCGCG
TGTCGTTACGCAGGTCGATATTACAGATGGACTTAAAACTGGCCTGAAGA
GGCCGAGTAACGGCACTATATTGCCAGTAACTTATTTAGGTATATTGCAG
GAGGAATCGGGCGCTAGTGGGAGCCGGATGGACCGGAGAGACTCAACGCC
CGGTGTTCAAGAGTATGTTTGTTATTGAGTAAAATACATGATATTCTTTT
CGAGGTGAGATGATTTTGAAACTATCTGGAGAGAGATTTCATCAAGCGAT
TTCCTTCTTCCTTCGTTTCATCTGAAGAGATTTTCTCGCGTGGATCGTTT
ACTTCTGGCAATAGTAGTTGTTACATAAAAAATCTAACCTGAAAGATTCC
CATCAACTTGCATGTTGGATTATCATTGGAGAGATTCCCTTCCAATGACA
GCAAGAAGCCGTGGGAGTTTTTGAATAACTGTTTGTTGGAGACACTCGGA
GATGATAAAAAGCTAATTTCCCGAAAGATTATGGCTAATGGTTAATGATG
TTCTGTCCAGTTTTCCACCTGGCATTAATCCAGATTTGATCAAAACAAGT
TTGAAACAActtactttttgtttttggctATTATACCTGGTTGGTGTTTC
GCCAGGTGTCTTTCAACATTTTAACGCCtgataatttcaatttgaaaaac
attaagataaaataaaatactatCAAGAAGTTCAATTGAATGTAAAACAG
AATATTGGAATTCGacgaaaagaaatgaaaacctGGCAAATTCGATATGG
TGGTAAATACTGTTTCAGATATCCgcttaaaaatggcaaaatattttccc
gTACCGTAGTTCGAGGCTGAGAGCTTTTAAATACGAAAGTAGAACATACG
TTACAAATTTACATTGAATAATTATTATAGATTGATTGTACTTATTGGCG
TCATAAGAGCTATAATTAATTCTTAATGATTTCAATAATGGCCTGATTGT
TTTCTTCAGTTAGAATTCATTACATGAGAATCAAAGATTGTTTACGAATT
GTCAGTTTTCCATATCCATATCTtc Run BLAST on NCBI transcript from alignment at scaffold_189:347547..353854- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050829 ID=TCONS_00050829|Name=TCONS_00050829|organism=Clytia hemisphaerica|type=transcript|length=6308bp|location=Sequence derived from alignment at scaffold_189:347547..353854- (Clytia hemisphaerica)
GCAACAGGTTTGAAAAACACGATCCAAATAAGACCAATAAAAGCAATAGA
TGTATCTACACATCCTGGTTATGTGTCTGGTGGCTTTACCGATACATTGT
GATGGTGTTGATAATAGTACTTCTACTAAAGATAGTTCCACTGGTGGTAG
ATCTCAGACTTTCTTGGCTGTCGCGTTGACCGTTGTCATTACTGGATTTA
TCATATTGTTGATGATCATTTTCGCTTTGCTCCTTATTCAAAGAAGGTTA
GTTGTAATACCTTTTCACACCCCTGTTTCAAAACAGTAGTCCTGTGATAA
AATTTATATCAGTTAAATGAATGTGATAAATCTAGTGTATGTGATTGACG
GTGTAGCGTTTTTTTCTGTTGGTTTTTCGGTGTCAAACATGCCCTGCGGT
GACAAAATATAGATTTTAATAGTTTTTGCTGTCAGTATGTCGGTTCTCAC
AGCCCCCGTACGCCCCCGGGGTTGAAAGAAAAGACAATTTTTTGTCTCTA
TTGATGTAGGTTTTAAAGTCAACTAGGATGATGTAACTAGTGGCAACCAA
ATTTCTAAGATAACAAAATATAATAGTTTTTGATACAATGATGACAATAA
TTTTGGTCTACATTTGCGGTGAAGAGCTTATATGGTTGGAATGTTTCCAA
CATTACATGCAAAAGAAAGCGTGTAGAGAAAACTATCGTATGGAACTATT
TCAATAGTATTTTATGTTAGAAAGAGAGTATCATGCAAAATTAGTTTTGA
AATATGAGTGATTTTACCAGTTGGGCCAGTTAGGGTATTAAGAGAAGGGA
AAGTTAGCTCGCTCTTTTATACAAGTGGAAACAGTTAATGCAAGGATTTG
ACACTTGTTATTTTCATCTTCATCTTATCCTCACAAAAAACAATTATTAA
CGTGGGCTACTAAAACAGTAATACACCCCCTTCTCACAGACCCACTGGGA
ACCCTTCCCAACGAAAAAGTTGGCCAAAATATTGTCCCTAGTGGAAAATT
AAACTTTAATGTCCCCGCTGAAAATAATCAGATAAGCAAATCCTCACTGC
AAAATATTGTGCTATTTTTTCCATTCCCACTGAATTCATTGGCGAGAAAA
CAATGGAATTTAAACCCCCAGCCATTAAAACATAAGAACATCAATCCCCA
TCGAGTTTTGGTCCGCTATTTTCACCCCTACTGTCTGATAAAATCCCACC
GGGTCTGTGAGAAGGAGGTGTAGTGGTGTTTCAGATAAACTTTGAAATCA
AATTAGAAATCTAACTTTATTTCGAAATACATGTTTTTTCTTTTATAAGC
ATAACGTTTATAAGCATAGACAGGCTCAGTTTTTGGTACCTAAACAATGG
CTCTATTGTTTGAGAACAATAGAATGCTAAGCATAATGCGAGCCTGATGT
AGGGGCAGACACTTGCTTATAAAAAAAAAAACATGTACAGAAAGATTTGA
AACAAATGAAATATCTTTGTGTGTTTCTTTTGAAAGGACCGAGAGTCAGT
TCGAATTTTTGAAAGATTCGTACAATAGTAGAATCTTCTGTTTTGGTTGT
AAGTCCTTTCTTACTATGGTAAAACAGTGGGCTTTCATCACACCATATAA
TGAATCTGTAATAAAAACTTCTTTAAAGAAAATATTACCCACGCATAACA
CGATTTCTCGTGATTTTAATTGCTCGAAACTAAATTTATGAAAATTCATG
TAGTGCATGTGTTTTTCTGGCTGGAAACGAAACTTTTTGGTATAATGCAT
TTTGCTACAGTCTCCCTTAAGGGAAGAAATTTTCGCGAGAAGAAATTTTC
GCGGAATTTAATTTCGCGAATTGGGGTGTAAACACACCAAAATTGTTCAA
TCGCGAAATTAAATTCCGCGAAATTCCAATTTTTTTTCTTCTTCTTTTAT
TTTGTGTTACCAAAAAAGATGGACACAATTGATTTTTAAGCATTATAACG
TGTATTTTTTATCAAATATAAACAAATATAAACAACTCCATGATGCTTAA
AAGTTAATCTAAGTTGATAACTTCTTCTCAATCGCGAAATTAAATTCCGT
GAAACTTTTAAAATCGGCTCATTCGCAAAATTAAATTTCGGGAAATTTGC
CATTTTGAAACTCTGATTCGCGAAATTAAATTCCGCGAAAATTTCTTCTC
GCGAAAATTTCTTCCCTTAAGGTAACTTTCCCAATAGAGATGCCTGTGAG
TAGTTCCCAGCTTGTCGGGAATGGAAAAAGCCGCTTCCTTAGGAATTATT
ACTTGATCATCTAATTTATTGATATTTTTATAATGCCCTTGGTACGTGAT
AAATTTGTTGCATATTCGGCAAAATAAACCCTCTATTTTGACAATAATAA
GGATGTTTGAATATTTTTCTTTCCTTTTATCATTCATAACAGAGACGAAA
CTTTGAAAATTTATGATATCCTCCTCTATATCCCTTTCATATTACTTAAG
ACAAGTAGTCAATCATACTAGATGATAGTATAAACTGAAAATACAATACG
TTTTAATAACCTAAAAATCTAAGCTAGATTGATTCAGTCACTTGGTCTAA
TCAGATGTTTAATTGTGACCTTGTATTCCAAGGCTAACTTCAAAATCTGC
AGATAAAAATATTTTTAAAGCGCCGTAAACGCTATATTGCCGTATAAGCC
GTGTGTCTCAGTCTTGTGAATACGGGCTTAGTTAACAAGGTGAGGACAAA
CAAGATTAAAGGAGGCTACAAACAAAAGCAATCAAAAGTTGACAAGAGAG
TGGAATCTAGTAAATTTATGCTTACTCATTAACCGATTAAGGCTTATTGT
CAATTTTTTTTCATTCTTTTTGACTTTTTAGCTCGAATACGATAAACCAA
TTTTTAATTTTCTTATCTGCTAATCCATCGGACACCCATTCATATTTCCA
TCAGACATACATATTGTAATCGATTTTCAAAATCTAAATTGAGGGCTTGG
CAATACCGAACGGTAAACTTTATTCCTTCAGTCGTTGTGACAGCAGTCTT
GTTTAAGACTTCTATCGCCCTACAATTTATTTTGGAAATAATTTGACTTG
GGTTAATTTATTTCCCGATGGTTGCTATCAGAGAAAATGCCTGAAAACTT
ATAACTTGATATCTGGAGATTTTCATCTTCTATTGGAGCTGTTAACAATT
CATTGCTATACGAGTAGTAGTAGTAGCAATCATTAGATATTATTCACTTC
CTATTTTCTTCCCCATATTCCAATCATCAAATATAATTGGTTGTTTACTC
CAGATGTATTTATAGTCTTTGCTGTTCCTTTTTCGGTTGTATAACGTGGT
AGCATATGGTTTATTTTTCCTGTGTGTGTAGTTGAGTCACTTTTCTATTC
GCGAGTGTGCTCGTGTCATATAATTAAAACGAATAGTATCTGTTTTATAA
CGCCCTTGGCGTCTAATCGAGGGGTGTTGAAAGGAAAGCATAGTATANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAAAATGGTTATTTTGCAAAATGCAAA
GTTTTTCTTTTTTTATTTGTCATAATTGTCACAATTGAGTGCATTTTCAA
GCAATCTAGAGCTCAAATTTTCAATCGGGCCAAACCATGGTTGGCCCTCG
CGGTGTCACTAAACTTCAGCCCCCTCAATATGAAAATGCTTCCTACGGCA
CTGTATATAAACAGGATCAAAGTCCCGCTTTTTTGGTTGTTTAAGGTAGG
AAAATAATGTAACTCTACTTTACGCATATATTAAGAATACGCTCTGACTC
AGCAGCTTTTGTCTACAGGATTGTGTCGGCACATTTTATTCCTACTACTT
TAAGGTTTGGTGTGGATTTGAAACTCTATTGTTTAAAATTCAAGGTTGTT
TTGAAAAGTGAAATGTGGTGAACTGTTAAGGTATTTTTCTCACCGGAACA
ATTTTCTTGTATGCTTTCCAATATGGGAAGGGGTTCAATAGTAATGGGCG
TTTTAATGCTTTAGAAGTCCCAATCGGTTTCCGAGATGGCTTGATTTTGG
CTTGTTTTAGCGTAATTGTGTGATACTAAATATTTTTTAGTAATGGCGTG
ATTAAGCCTTGGCGTATTGCATGATGGTGTGATAATGGGTGCCGATGTGG
GGGTGGCGGGCTCATGGAAGTTTCTGTCAACGATATAACTATAGTGAATC
CTCACAGTAGGGCCTAACAGGTGTTTGCTTTTAATTTTGTTATTCGTTAT
TGTCAAGGTGATCTGTGGTTATACTTTGTCGTTAGTTCTAAATTTAAACC
ACAAAACTAAGCATATTTGAAATTGTAGAAATTCCAACAGCTCTGCGTAG
TTCATTAGCTGTTAAAAAGCAATATAATGTTTTGATAAGACATCAAATTT
GAGCTGTTTTTACATGCAAGAAGTACTCGAATAGCGATTCTAAAATGACG
TGATATAGTATTTCTTAATTGTAAGGCAATCTTTCAATTTTCCTTACATT
GTCTTAAAAGAAATTAAAGATGAAACGTTATTTTGACTTGACTCCCGGGA
ATAAAATGAGCCTTACCAAAAAGATAGCAATACGTTGCTTATAATTTGGA
CCTCTTTGCCCGAGATAATTTATTATAAATGGAAAAGCTTTACTGATCCC
CTCATACATCAAATCATTATAAACAATTCTCTATAACTTTTCAACAATAA
TTGTAATAGGANTTTACTTTAATGTATCAAATCATTATAAACAAAGCTCT
AGAACTGTTCAACAATAATTGTAATAGGAATTTTCTCAGTAATAGCAATA
GGAGCTTGACTGTACCACAGGTCTTAAAATGGATCAAGAAAATGTTAACA
TGAAATTCTCTTCATCTTTTTTTCCTTAGAACGACGAAAGTCTGTTACGT
TCAACGGACACCAGAGGTGATCACCACAGATCGAAACAGAAATCCGACAC
TTAAAAACATAACAAACATCACTGAAATATATGATGAAAGTTTCTTAGAT
CAAGTAACGTTACAAAGATGGCAGTCTAAACGGAGCGAAATGAGAGCGAA
TACGCCAAGTATTAGAAGCACGAACAGTTCGCGTGTCGTTACGCAGGTCG
ATATTACAGATGGACTTAAAACTGGCCTGAAGAGGCCGAGTAACGGCACT
ATATTGCCAGTAACTTATTTAGGTATATTGCAGGAGGAATCGGGCGCTAG
TGGGAGCCGGATGGACCGGAGAGACTCAACGCCCGGTGTTCAAGAGTATG
TTTGTTATTGAGTAAAATACATGATATTCTTTTCGAGGTGAGATGATTTT
GAAACTATCTGGAGAGAGATTTCATCAAGCGATTTCCTTCTTCCTTCGTT
TCATCTGAAGAGATTTTCTCGCGTGGATCGTTTACTTCTGGCAATAGTAG
TTGTTACATAAAAAATCTAACCTGAAAGATTCCCATCAACTTGCATGTTG
GATTATCATTGGAGAGATTCCCTTCCAATGACAGCAAGAAGCCGTGGGAG
TTTTTGAATAACTGTTTGTTGGAGACACTCGGAGATGATAAAAAGCTAAT
TTCCCGAAAGATTATGGCTAATGGTTAATGATGTTCTGTCCAGTTTTCCA
CCTGGCATTAATCCAGATTTGATCAAAACAAGTTTGAAACAACTTACTTT
TTGTTTTTGGCTATTATACCTGGTTGGTGTTTCGCCAGGTGTCTTTCAAC
ATTTTAACGCCTGATAATTTCAATTTGAAAAACATTAAGATAAAATAAAA
TACTATCAAGAAGTTCAATTGAATGTAAAACAGAATATTGGAATTCGACG
AAAAGAAATGAAAACCTGGCAAATTCGATATGGTGGTAAATACTGTTTCA
GATATCCGCTTAAAAATGGCAAAATATTTTCCCGTACCGTAGTTCGAGGC
TGAGAGCTTTTAAATACGAAAGTAGAACATACGTTACAAATTTACATTGA
ATAATTATTATAGATTGATTGTACTTATTGGCGTCATAAGAGCTATAATT
AATTCTTAATGATTTCAATAATGGCCTGATTGTTTTCTTCAGTTAGAATT
CATTACATGAGAATCAAAGATTGTTTACGAATTGTCAGTTTTCCATATCC
ATATCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050829-exon-scaffold_189-1575043694:353609..353854 | TCONS_00050829-exon-scaffold_189-1575043694:353609..353854 | Clytia hemisphaerica | exon |
| TCONS_00050829-exon-scaffold_189-1575043694:347547..348775 | TCONS_00050829-exon-scaffold_189-1575043694:347547..348775 | Clytia hemisphaerica | exon |
| TCONS_00050829-exon-scaffold_189-1510915933:353609..353854 | TCONS_00050829-exon-scaffold_189-1510915933:353609..353854 | Clytia hemisphaerica | exon |
| TCONS_00050829-exon-scaffold_189-1510915933:347547..348775 | TCONS_00050829-exon-scaffold_189-1510915933:347547..348775 | Clytia hemisphaerica | exon |
| TCONS_00050829-exon-scaffold_189-1491911889:353609..353854 | TCONS_00050829-exon-scaffold_189-1491911889:353609..353854 | Clytia hemisphaerica | exon |
| TCONS_00050829-exon-scaffold_189-1491911889:347547..348775 | TCONS_00050829-exon-scaffold_189-1491911889:347547..348775 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:347547..353854 - |
Blast
The following BLAST results are available for this feature:
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