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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050826 ID=TCONS_00050826|Name=TCONS_00050826|organism=Clytia hemisphaerica|type=transcript|length=1286bp
CTAGATTTGGTTTAGaagctatttttttttcattttgatacaAGAGCTAA
CGAATGAGTTATAATGGTTGAAAAAAGCCTCTATTActtctttggttttc
ttttgTTATCGTTGATCGTCCTTTGGTTCATCTATCGCATCGCTACCAAA
TACATCAAGGGAGATTTTATCGATGATGATAGCGATTATGATGATGACGA
AAACGAAGAAATCAATAGCGGAGAAGAACAATTAGTAACACAACCGTCAA
CAATATCACCTTATTAAGAAATCTCCGCCACTGATGATTGAACTTGTAAA
TTCGGTTTTAAANTCATTTTGATACAAGAGCTAACGAATGAGTTATAATG
GTTGAAAAAAGCCTCTATTActtctttggttttcttttgTTATCGTTGAT
CGTCCTTTGGTTCATCTATCGCATCGCTACCAAATACATCAAGGGAGATT
TTATCGATGATGATAGCGATTATGATGATGACGAAAACGAAGAAATCAAT
AGCGGAGAAGAACAATTAGTAACACAACCGTCAACAATATCACCTTATTA
AGAAATCTCCGCCACTGATGATTGAACTTGTAAATTcggttttaaaatga
aaaaacaaaaaaaataatagaccttttcataaattacgtgtCACGACCAT
CACTTGCAtcatattcaaacaattaccatggttataaatagaaagtagtt
ttcaTAAAACCTGCTGGGAGATATATACAAAATACGAAGAGGAGAAAACA
TAGCATGtccaaaaaagatgaaaagTCTTTTTAGCTTCATCATTTATGTT
GGGACCGGTCACAAATGTAGAGATTTAAATACTTCCATTTGTATACAAAT
GTATGGGAAACAAAAAGGTTTGAAACATCATAAATTTGAAATAGTCTGGT
GAATAAGATTGTTGGATAAGTGAAACGTATGGAAACTGTTAAGATTTTGA
TGGCCGATCTAAAATATCGTATAGGTTCGCAAAtcagaaattttaaagat
tACAGCCGTCAACCTTTCAGAATgacatttgaattattttcaagttttgc
atCTTAGAAGGTCCCGTGATAATTGGTTTTGGAGTAATTATCCTAAAATA
CTAACGATAccttttgttttattattgtaGTCCAAAAAGGGAATAAACTT
TACTTTTGATAcaatcagaggaatgtaaacagaTAGataaacagcttttc
tgattactcaaagttcaacgatcacttctattgaaaattctattgtaaaa
acgttgattaggtcattaaatgaaagtccagaaaag Run BLAST on NCBI transcript from alignment at scaffold_189:297919..300724- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050826 ID=TCONS_00050826|Name=TCONS_00050826|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at scaffold_189:297919..300724- (Clytia hemisphaerica)
CTAGATTTGGTTTAGAAGCTATTTTTTTTTCATTTTGATACAAGAGCTAA
CGAATGAGTTATAATGGTTGAAAAAAGTAAGTATCATTGAAATGATACGT
GTTTTTTATCAAAAATTTGGCAAAAATACTTCTTTCTGAGTCTCAAGCCT
TTAATTCACGTTTTTTTATAAGAACAGCCAAAATTTTCTTAACCTAAATA
TATTCTTAACGTGTTCTTATTTTCACCATTTTGGGAATATTTTTTACCGT
TTCCCTAAGAAATCGGGTGTTTTAGAGTCTGCAAAGCCTTAAAATGTTCT
TAACTTGTTCTTAAACTTTTGGCCAGCGAAGCCTTATATAGTTTGTTCTT
ATTAAAAAAAAACGTGCAGCTCCTTGACGTGTTCGATATTGGGCAAAAAA
TTGCACTTCAAAACAATCCCCACTGGACCTATAATTATCAGTTTTGTGGA
ATTGAATTTCTATCCTCATTGAATTAGATTCTAAGTTTCAGCTGTTTCAG
TGTAAGCTGTTTAGGGATATTCTTACTTACACCCCTGTCTCATAGCCCCG
GTGGAACTCTTTTCTACAGTGGGGTTAAAAATCCCTATCAAAATCCCAAT
GGGGATAGATATCCTATTGTTCGAAGGTTAAAAAATCCAGTGAGAATGGA
TTTTGGAGTGCAATTATTAGACATTGATTTTCGAGTAGAAATGAAATCAA
AGTCAATTTCCCAGTGGGGCAGAAATTCCTGGGTATATTCCAATCGGGAA
CCAAATTTTGGCCAAACTTTCTAGTGGAGATGGGGTTCCAGTGGGTCTGT
GACACAGGGGTGTTTATTTTCATCTTATTTTTGCAGGCCTCTATTACTTC
TTTGGTTTTCTTTTGTTATCGTTGATCGTCCTTTGGTTCATCTATCGCAT
CGCTACCAAATACATCAAGGGAGATTTTATCGATGATGATAGCGATTATG
ATGATGACGAAAACGAAGAAATCAATAGCGGAGAAGAACAATTAGTAACA
CAACCGTCAACAATATCACCTTATTAAGAAATCTCCGCCACTGATGATTG
AACTTGTAAATTCGGTTTTAAANTCATTTTGATACAAGAGCTAACGAATG
AGTTATAATGGTTGAAAAAAGTAAGTATCATTGAAATGATACGTGTTTTT
TATCAAAAATTTGGCAAAAATACTTCTTTCTGAGTCTCAAGCCTTTAATT
CACGTTTTTTTATAAGAACAGCCAAAATTTTCTTAACCTAAATATATTCT
TAACGTGTTCTTATTTTCACCATTTTGGGAATATTTTTTACCGTTTCCCT
AAGAAATCGGGTGTTTTAGAGTCTGCAAAGCCTTAAAATGTTCTTAACTT
GTTCTTAAACTTTTGGCCAGCGAAGCCTTATATAGTTTGTTCTTATTAAA
AAAAAACGTGCAGCTCCTTGACGTGTTCGATATTGGGCAAAAAATTGCAC
TTCAAAACAATCCCCACTGGACCTATAATTATCAGTTTTGTGGAATTGAA
TTTCTATCCTCATTGAATTAGATTCTAAGTTTCAGCTGTTTCAGTGTAAG
CTGTTTAGGGATATTCTTACTTACACCCCTGTCTCATAGCCCCGGTGGAA
CTCTTTTCTACAGTGGGGTTAAAAATCCCTATCAAAATCCCAATGGGGAT
AGATATCCTATTGTTCGAAGGTTAAAAAATCCAGTGAGAATGGATTTTGG
AGTGCAATTATTAGACATTGATTTTCGAGTAGAAATGAAATCAAAGTCAA
TTTCCCAGTGGGGCAGAAATTCCTGGGTATATTCCAACCGGGAACCAAAT
TTTGGCCAAACTTTCTAGTGGAGATGGGGTTCCAGTGGGTCTGTGACACA
GGGGTGTTTATTTTCATCTTATTTTTGCAGGCCTCTATTACTTCTTTGGT
TTTCTTTTGTTATCGTTGATCGTCCTTTGGTTCATCTATCGCATCGCTAC
CAAATACATCAAGGGAGATTTTATCGATGATGATAGCGATTATGATGATG
ACGAAAACGAAGAAATCAATAGCGGAGAAGAACAATTAGTAACACAACCG
TCAACAATATCACCTTATTAAGAAATCTCCGCCACTGATGATTGAACTTG
TAAATTCGGTTTTAAAATGAAAAAACAAAAAAAATAATAGACCTTTTCAT
AAATTACGTGTCACGACCATCACTTGCATCATATTCAAACAATTACCATG
GTTATAAATAGAAAGTAGTTTTCATAAAACCTGCTGGGAGATATATACAA
AATACGAAGAGGAGAAAACATAGCATGTCCAAAAAAGATGAAAAGTCTTT
TTAGCTTCATCATTTATGTTGGGACCGGTCACAAATGTAGAGATTTAAAT
ACTTCCATTTGTATACAAATGTATGGGAAACAAAAAGGTTTGAAACATCA
TAAATTTGAAATAGTCTGGTGAATAAGATTGTTGGATAAGTGAAACGTAT
GGAAACTGTTAAGATTTTGATGGCCGATCTAAAATATCGTATAGGTTCGC
AAATCAGAAATTTTAAAGATTACAGCCGTCAACCTTTCAGAATGACATTT
GAATTATTTTCAAGTTTTGCATCTTAGAAGGTCCCGTGATAATTGGTTTT
GGAGTAATTATCCTAAAATACTAACGATACCTTTTGTTTTATTATTGTAG
TCCAAAAAGGGAATAAACTTTACTTTTGATACAATCAGAGGAATGTAAAC
AGATAGATAAACAGCTTTTCTGATTACTCAAAGTTCAACGATCACTTCTA
TTGAAAATTCTATTGTAAAAACGTTGATTAGGTCATTAAATGAAAGTCCA
GAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050826-exon-scaffold_189-1575043694:300649..300724 | TCONS_00050826-exon-scaffold_189-1575043694:300649..300724 | Clytia hemisphaerica | exon |
| TCONS_00050826-exon-scaffold_189-1575043694:299605..299888 | TCONS_00050826-exon-scaffold_189-1575043694:299605..299888 | Clytia hemisphaerica | exon |
| TCONS_00050826-exon-scaffold_189-1575043694:297919..298844 | TCONS_00050826-exon-scaffold_189-1575043694:297919..298844 | Clytia hemisphaerica | exon |
| TCONS_00050826-exon-scaffold_189-1510915933:300649..300724 | TCONS_00050826-exon-scaffold_189-1510915933:300649..300724 | Clytia hemisphaerica | exon |
| TCONS_00050826-exon-scaffold_189-1510915933:299605..299888 | TCONS_00050826-exon-scaffold_189-1510915933:299605..299888 | Clytia hemisphaerica | exon |
| TCONS_00050826-exon-scaffold_189-1510915933:297919..298844 | TCONS_00050826-exon-scaffold_189-1510915933:297919..298844 | Clytia hemisphaerica | exon |
| TCONS_00050826-exon-scaffold_189-1491911889:300649..300724 | TCONS_00050826-exon-scaffold_189-1491911889:300649..300724 | Clytia hemisphaerica | exon |
| TCONS_00050826-exon-scaffold_189-1491911889:299605..299888 | TCONS_00050826-exon-scaffold_189-1491911889:299605..299888 | Clytia hemisphaerica | exon |
| TCONS_00050826-exon-scaffold_189-1491911889:297919..298844 | TCONS_00050826-exon-scaffold_189-1491911889:297919..298844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:297919..300724 - |
Blast
The following BLAST results are available for this feature:
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