TCONS_00050794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050794
Unique NameTCONS_00050794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050794 ID=TCONS_00050794|Name=TCONS_00050794|organism=Clytia hemisphaerica|type=transcript|length=207bp
ttcagtttcagtttcaatTGAAGACAATCAATCGTCCCTTACTGGAAGGG
CTAAAAACTTAAAACATGGACCAGTAACAAAAGTTTGTAACACGTGTAAG
GAAAGGCCAGCACCAGGATGCAAGAAGTGTGTCCATTGTGGTAACGTTTC
TGAGAAGAGATCCAAAACGATCAAACAAATGATgccaaaatataaaacaa
atttcac
Run BLAST on NCBI

transcript from alignment at scaffold_188:13774..14242-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050794 ID=TCONS_00050794|Name=TCONS_00050794|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at scaffold_188:13774..14242- (Clytia hemisphaerica)
TTCAGTTTCAGTTTCAATTGAAGACAATCAATCGTCCCTTACTGGAAGGG
CTAAAAACTTAAAACATGGACCAGTAACAAAAGTGAGATCATATTCTTTC
ACAGTCGATATTGAATGACGAAATTAGGTGATATTAATTATATTGTAATT
AAACAGGTCAATTCTTTTGTATAAATTTTATAATTATCTTGTCAAATNGA
AAAATGGACCAGTACTAGAAGTGAGATCATATTTTTTCACAGTCGATTTT
GAATGACGAAATTAGGTGATATTAATTATATTGTAATTAAACAGATCAAT
TCTTTTGTATAAATTTCATAATTATCTTGTCAAATGATTTTTAGGTTTGT
AACACGTGTAAGGAAAGGCCAGCACCAGGATGCAAGAAGTGTGTCCATTG
TGGTAACGTTTCTGAGAAGAGATCCAAAACGATCAAACAAATGATGCCAA
AATATAAAACAAATTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032175XLOC_032175Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050794-exon-scaffold_188-1575043694:14161..14242TCONS_00050794-exon-scaffold_188-1575043694:14161..14242Clytia hemisphaericaexon
TCONS_00050794-exon-scaffold_188-1575043694:13774..13898TCONS_00050794-exon-scaffold_188-1575043694:13774..13898Clytia hemisphaericaexon
TCONS_00050794-exon-scaffold_188-1510915933:14161..14242TCONS_00050794-exon-scaffold_188-1510915933:14161..14242Clytia hemisphaericaexon
TCONS_00050794-exon-scaffold_188-1510915933:13774..13898TCONS_00050794-exon-scaffold_188-1510915933:13774..13898Clytia hemisphaericaexon
TCONS_00050794-exon-scaffold_188-1491911889:14161..14242TCONS_00050794-exon-scaffold_188-1491911889:14161..14242Clytia hemisphaericaexon
TCONS_00050794-exon-scaffold_188-1491911889:13774..13898TCONS_00050794-exon-scaffold_188-1491911889:13774..13898Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_188supercontigscaffold_188:13774..14242 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top